; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G20110 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G20110
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionE3 ubiquitin-protein ligase CHFR isoform X2
Genome locationChr4:18178844..18182883
RNA-Seq ExpressionCSPI04G20110
SyntenyCSPI04G20110
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146401.2 E3 ubiquitin-protein ligase CHFR isoform X1 [Cucumis sativus]1.0e-6791.3Show/hide
Query:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTS
        SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHT+
Subjt:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTS

Query:  VLCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD
        VLCPQCRAVVQFVGRNHYLLNIAE I      L+++V+
Subjt:  VLCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD

XP_008442086.1 PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X2 [Cucumis melo]5.6e-6689.13Show/hide
Query:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTS
        SNAIIVDETLVQKDETTFI+CGSEIVSGPVRDG+LSFKFEM SDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTS
Subjt:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTS

Query:  VLCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD
        VLCPQCRA VQFVGRNHYLLNIAE I      L+++V+
Subjt:  VLCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD

XP_016899584.1 PREDICTED: E3 ubiquitin-protein ligase CHFR isoform X3 [Cucumis melo]8.9e-6484.25Show/hide
Query:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLK--------ISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLK
        SNAIIVDETLVQKDETTFI+CGSEIVSGPVRDG+LSFKFEM SDSKLCKGLK        ISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLK
Subjt:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLK--------ISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLK

Query:  RSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD
        RSQEKHTSVLCPQCRA VQFVGRNHYLLNIAE I      L+++V+
Subjt:  RSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD

XP_031739668.1 E3 ubiquitin-protein ligase CHFR isoform X2 [Cucumis sativus]1.3e-6799.21Show/hide
Query:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTS
        SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHT+
Subjt:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTS

Query:  VLCPQCRAVVQFVGRNHYLLNIAEVI
        VLCPQCRAVVQFVGRNHYLLNIAEVI
Subjt:  VLCPQCRAVVQFVGRNHYLLNIAEVI

XP_038887863.1 E3 ubiquitin-protein ligase CHFR [Benincasa hispida]8.1e-6586.23Show/hide
Query:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTS
        SNAIIVDETLVQKD+TTFIKCGSEI+SGPVRDG+LS+KF+MLS S++CKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTS
Subjt:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTS

Query:  VLCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD
        VLCPQCRAVVQFVGRNHYLLNIAE I      L+++V+
Subjt:  VLCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD

TrEMBL top hitse value%identityAlignment
A0A0A0KYR0 RING-type domain-containing protein4.9e-6891.3Show/hide
Query:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTS
        SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHT+
Subjt:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTS

Query:  VLCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD
        VLCPQCRAVVQFVGRNHYLLNIAE I      L+++V+
Subjt:  VLCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD

A0A1S3B4G1 E3 ubiquitin-protein ligase CHFR isoform X14.3e-6484.25Show/hide
Query:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLK--------ISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLK
        SNAIIVDETLVQKDETTFI+CGSEIVSGPVRDG+LSFKFEM SDSKLCKGLK        ISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLK
Subjt:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLK--------ISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLK

Query:  RSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD
        RSQEKHTSVLCPQCRA VQFVGRNHYLLNIAE I      L+++V+
Subjt:  RSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD

A0A1S3B4V7 E3 ubiquitin-protein ligase CHFR isoform X22.7e-6689.13Show/hide
Query:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTS
        SNAIIVDETLVQKDETTFI+CGSEIVSGPVRDG+LSFKFEM SDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTS
Subjt:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTS

Query:  VLCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD
        VLCPQCRA VQFVGRNHYLLNIAE I      L+++V+
Subjt:  VLCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD

A0A1S4DUC8 E3 ubiquitin-protein ligase CHFR isoform X34.3e-6484.25Show/hide
Query:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLK--------ISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLK
        SNAIIVDETLVQKDETTFI+CGSEIVSGPVRDG+LSFKFEM SDSKLCKGLK        ISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLK
Subjt:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLK--------ISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLK

Query:  RSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD
        RSQEKHTSVLCPQCRA VQFVGRNHYLLNIAE I      L+++V+
Subjt:  RSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD

A0A6J1F3R3 E3 ubiquitin-protein ligase CHFR isoform X29.0e-6282.48Show/hide
Query:  NAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTSV
        NAI+VDETLVQKD+  FIKCGSEIVSGPV+DG+LS+KFE+LSDSK+CKGLKIS+DVEH KCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEK TSV
Subjt:  NAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTSV

Query:  LCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD
        LCPQCRAVVQFVGRNH+LLNIAE I      L+++V+
Subjt:  LCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD

SwissProt top hitse value%identityAlignment
Q5FWP4 E3 ubiquitin-protein ligase CHFR3.5e-1037.8Show/hide
Query:  SDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAE
        SD      +K     E   C IC  + HD V+  PC H FC  C+S W++RS       LCP CR  V+ + +NH L N+ E
Subjt:  SDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAE

Q5RF77 E3 ubiquitin-protein ligase CHFR5.9e-1041.79Show/hide
Query:  EHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAE
        E   C IC ++ HD V+  PC H FC  C+S W++RS       LCP CR  V+ + +NH L N+ E
Subjt:  EHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAE

Q6P256 E3 ubiquitin-protein ligase CHFR3.5e-1037.8Show/hide
Query:  SDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAE
        SD      +K     E   C IC  + HD V+  PC H FC  C+S W++RS       LCP CR  V+ + +NH L N+ E
Subjt:  SDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAE

Q810L3 E3 ubiquitin-protein ligase CHFR1.6e-1033.65Show/hide
Query:  DGNLSFKFEMLSDSKLCKGLKISVDVEHAK-----------CSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTSVLCPQCRAVVQFVGRNHYLL
        DG L    ++L   +       S DV+ A            C IC ++ HD V+  PC H FC  C+S W++RS       LCP CR  V+ + +NH L 
Subjt:  DGNLSFKFEMLSDSKLCKGLKISVDVEHAK-----------CSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTSVLCPQCRAVVQFVGRNHYLL

Query:  NIAE
        N+ E
Subjt:  NIAE

Q96EP1 E3 ubiquitin-protein ligase CHFR5.9e-1041.79Show/hide
Query:  EHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAE
        E   C IC ++ HD V+  PC H FC  C+S W++RS       LCP CR  V+ + +NH L N+ E
Subjt:  EHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTSVLCPQCRAVVQFVGRNHYLLNIAE

Arabidopsis top hitse value%identityAlignment
AT1G47570.1 RING/U-box superfamily protein3.2e-4356.83Show/hide
Query:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEML-SDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHT
        S+AI+VD+ +V KD    I  GSEIV GP   G L ++F ++ +     + L+IS+D EHAKCSICLNIWHDVVTAAPC HNFCNGCFSEW++RS+EKH 
Subjt:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEML-SDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHT

Query:  SVLCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD
         VLCPQCR  VQ+VG+NH+L NI E I  +   L++  +
Subjt:  SVLCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD

AT1G47570.2 RING/U-box superfamily protein3.2e-4356.83Show/hide
Query:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEML-SDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHT
        S+AI+VD+ +V KD    I  GSEIV GP   G L ++F ++ +     + L+IS+D EHAKCSICLNIWHDVVTAAPC HNFCNGCFSEW++RS+EKH 
Subjt:  SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEML-SDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHT

Query:  SVLCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD
         VLCPQCR  VQ+VG+NH+L NI E I  +   L++  +
Subjt:  SVLCPQCRAVVQFVGRNHYLLNIAEVISYLSILLKKTVD

AT3G05250.1 RING/U-box superfamily protein5.0e-0434Show/hide
Query:  CSICLNIWHDVVTAAPCFHNFCNGCFSEWLK----RSQEKHTSVLCPQCR
        C ICL  +        CFH FC  C  +W+K    ++ ++ +SV CP C+
Subjt:  CSICLNIWHDVVTAAPCFHNFCNGCFSEWLK----RSQEKHTSVLCPQCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCAAATGCTATCATTGTCGATGAGACTCTTGTTCAAAAGGATGAAACTACTTTCATCAAGTGTGGAAGCGAAATTGTTTCGGGTCCAGTTCGGGATGGGAATTTGAGCTT
TAAATTTGAAATGTTGTCAGATTCAAAATTATGCAAAGGCTTAAAGATTTCTGTGGATGTTGAGCACGCAAAATGCAGTATTTGCTTAAACATATGGCATGATGTTGTCA
CAGCCGCTCCTTGCTTCCACAACTTTTGCAATGGATGTTTCTCGGAGTGGTTAAAAAGATCCCAAGAGAAGCATACAAGTGTACTTTGTCCCCAATGTAGAGCAGTCGTG
CAGTTTGTTGGAAGAAACCACTACTTGCTGAACATTGCGGAGGTAATATCGTACTTAAGCATCTTACTGAAGAAAACTGTTGATTGGTATGAGTTAGAGCGAAACAAGAA
ATAA
mRNA sequenceShow/hide mRNA sequence
TTCAAATGCTATCATTGTCGATGAGACTCTTGTTCAAAAGGATGAAACTACTTTCATCAAGTGTGGAAGCGAAATTGTTTCGGGTCCAGTTCGGGATGGGAATTTGAGCT
TTAAATTTGAAATGTTGTCAGATTCAAAATTATGCAAAGGCTTAAAGATTTCTGTGGATGTTGAGCACGCAAAATGCAGTATTTGCTTAAACATATGGCATGATGTTGTC
ACAGCCGCTCCTTGCTTCCACAACTTTTGCAATGGATGTTTCTCGGAGTGGTTAAAAAGATCCCAAGAGAAGCATACAAGTGTACTTTGTCCCCAATGTAGAGCAGTCGT
GCAGTTTGTTGGAAGAAACCACTACTTGCTGAACATTGCGGAGGTAATATCGTACTTAAGCATCTTACTGAAGAAAACTGTTGATTGGTATGAGTTAGAGCGAAACAAGA
AATAA
Protein sequenceShow/hide protein sequence
SNAIIVDETLVQKDETTFIKCGSEIVSGPVRDGNLSFKFEMLSDSKLCKGLKISVDVEHAKCSICLNIWHDVVTAAPCFHNFCNGCFSEWLKRSQEKHTSVLCPQCRAVV
QFVGRNHYLLNIAEVISYLSILLKKTVDWYELERNKK