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CSPI04G20120 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G20120
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr4:18187775..18188326
RNA-Seq ExpressionCSPI04G20120
SyntenyCSPI04G20120
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039228.1 hypothetical protein E6C27_scaffold64G00170 [Cucumis melo var. makuwa]6.7e-0468.57Show/hide
Query:  GIRQGDSLSSFLFLLTSEVLGALLNKLAANGHYEG
        GIRQG   S FLFLL SEVLG ++NKL  NGH+EG
Subjt:  GIRQGDSLSSFLFLLTSEVLGALLNKLAANGHYEG
TYK02777.1 Transposon TX1 uncharacterized [Cucumis melo var. makuwa]3.0e-0471.43Show/hide
Query:  GIRQGDSLSSFLFLLTSEVLGALLNKLAANGHYEG
        GIRQGD LS FLFLL SEVLG ++NKL +NG +EG
Subjt:  GIRQGDSLSSFLFLLTSEVLGALLNKLAANGHYEG
TYK28316.1 transportin-3 isoform X1 [Cucumis melo var. makuwa]7.9e-0580Show/hide
Query:  GIRQGDSLSSFLFLLTSEVLGALLNKLAANGHYEG
        GIRQGD LS FL LL SEVLGALLNKL  NG YEG
Subjt:  GIRQGDSLSSFLFLLTSEVLGALLNKLAANGHYEG
TYK31266.1 hypothetical protein E5676_scaffold455G005560 [Cucumis melo var. makuwa]8.7e-0468.57Show/hide
Query:  GIRQGDSLSSFLFLLTSEVLGALLNKLAANGHYEG
        GIRQGD  S FLFLL SEVLG ++NKL +NG +EG
Subjt:  GIRQGDSLSSFLFLLTSEVLGALLNKLAANGHYEG
XP_038879260.1 uncharacterized mitochondrial protein AtMg01250-like [Benincasa hispida]6.7e-0477.14Show/hide
Query:  GIRQGDSLSSFLFLLTSEVLGALLNKLAANGHYEG
        GIRQGD LS FLF L SEVLGALL+KL  NG YEG
Subjt:  GIRQGDSLSSFLFLLTSEVLGALLNKLAANGHYEG
TrEMBL top hitse value%identityAlignment
A0A5A7T8L2 Reverse transcriptase domain-containing protein3.2e-0468.57Show/hide
Query:  GIRQGDSLSSFLFLLTSEVLGALLNKLAANGHYEG
        GIRQG   S FLFLL SEVLG ++NKL  NGH+EG
Subjt:  GIRQGDSLSSFLFLLTSEVLGALLNKLAANGHYEG
A0A5D3BTI0 Transposon TX1 uncharacterized1.5e-0471.43Show/hide
Query:  GIRQGDSLSSFLFLLTSEVLGALLNKLAANGHYEG
        GIRQGD LS FLFLL SEVLG ++NKL +NG +EG
Subjt:  GIRQGDSLSSFLFLLTSEVLGALLNKLAANGHYEG
A0A5D3DX38 Transportin-3 isoform X13.8e-0580Show/hide
Query:  GIRQGDSLSSFLFLLTSEVLGALLNKLAANGHYEG
        GIRQGD LS FL LL SEVLGALLNKL  NG YEG
Subjt:  GIRQGDSLSSFLFLLTSEVLGALLNKLAANGHYEG
A0A5D3E6J9 Reverse transcriptase domain-containing protein4.2e-0468.57Show/hide
Query:  GIRQGDSLSSFLFLLTSEVLGALLNKLAANGHYEG
        GIRQGD  S FLFLL SEVLG ++NKL +NG +EG
Subjt:  GIRQGDSLSSFLFLLTSEVLGALLNKLAANGHYEG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGCTTAATGCTAGTGTGCAGAAAAATTTCATTTGTCGACTGTGAAAGGAGGAGCGGACCTTGTAAAGGACTTCAGACCAATCAGCCTCCCGACATTACCTTAGG
AATTAGGCAGGGTGATTCCCTATCTTCTTTCCTTTTCCTTTTAACAAGCGAGGTTTTGGGAGCCCTTTTGAACAAGCTAGCTGCAAACGGGCATTATGAAGGCTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGGCTTAATGCTAGTGTGCAGAAAAATTTCATTTGTCGACTGTGAAAGGAGGAGCGGACCTTGTAAAGGACTTCAGACCAATCAGCCTCCCGACATTACCTTAGG
AATTAGGCAGGGTGATTCCCTATCTTCTTTCCTTTTCCTTTTAACAAGCGAGGTTTTGGGAGCCCTTTTGAACAAGCTAGCTGCAAACGGGCATTATGAAGGCTTGTAG
Protein sequenceShow/hide protein sequence
MEGLMLVCRKISFVDCERRSGPCKGLQTNQPPDITLGIRQGDSLSSFLFLLTSEVLGALLNKLAANGHYEGL