| GenBank top hits | e value | %identity | Alignment |
|---|
| KAG8475264.1 hypothetical protein CXB51_032125 [Gossypium anomalum] | 6.5e-52 | 41.38 | Show/hide |
Query: VKGFKMWHPTNKKFIISRDVHFRETEMF--MQGKGSIERNPNAT-------ETYTTRIEVENTRNNAQSIDKTTGTDQEQVKNIGGEQTGIIEEQPDLSQ
VKG+K+W P N+K +ISRDV F ET M + K S + + T + Y V N A+ ID +QE E T +EE ++
Subjt: VKGFKMWHPTNKKFIISRDVHFRETEMF--MQGKGSIERNPNAT-------ETYTTRIEVENTRNNAQSIDKTTGTDQEQVKNIGGEQTGIIEEQPDLSQ
Query: -----YSLASDKQRRIIVPPA------RLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSP-----RYD--
YS + P R LL +VA ++LEL+QLDVKT FLHG L+E IYM QP+GF V KED LLKKS+YGLKQSP R+D
Subjt: -----YSLASDKQRRIIVPPA------RLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSP-----RYD--
Query: ----------RSKEDLNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNSP-SETDIEHK
+ K ++ VK LS+EF+MKDLG ++KILG++I RDR S L + Q Y EK++ RFN+ + +PV+ P+ +F+L + SP S+ +IE+
Subjt: ----------RSKEDLNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNSP-SETDIEHK
Query: LKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
M +VPY VGSL+Y M+ +RPDL Y+ + V RYM N GK HWK +
Subjt: LKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
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| KAG8475264.1 hypothetical protein CXB51_032125 [Gossypium anomalum] | 2.2e-07 | 53.23 | Show/hide |
Query: GLEALSKQGILP-QDICNKLSFCEHCVLGKARKQSFTKAQHKTKRILDYIYSDLGGPTSTPS
G+ LSK+G+L Q IC KL+FCE+CV GK ++ FT+ H TK L+YI+SDL GP+ PS
Subjt: GLEALSKQGILP-QDICNKLSFCEHCVLGKARKQSFTKAQHKTKRILDYIYSDLGGPTSTPS
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| KAG8475264.1 hypothetical protein CXB51_032125 [Gossypium anomalum] | 1.1e-51 | 40.22 | Show/hide |
Query: VKGFKMWHPTNKKFIISRDVHFRETEMF----------MQGKGSIERNPNATETYTTRIEVENTRNNAQSID-KTTGTDQEQVKNI--------GGEQTG
VKG+K+W P N+K +ISRDV F ET M + K +R + Y V N A+ ID ++ +V+ + E T
Subjt: VKGFKMWHPTNKKFIISRDVHFRETEMF----------MQGKGSIERNPNATETYTTRIEVENTRNNAQSID-KTTGTDQEQVKNI--------GGEQTG
Query: IIEEQPDLSQ-----YSLASDKQRRIIVPPA------RLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSP
+EE ++ YS + P R LL +VA ++LEL+QLDVKT FLHG L+E IYM QP+GF V KED LLKKS+YGLKQSP
Subjt: IIEEQPDLSQ-----YSLASDKQRRIIVPPA------RLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSP
Query: -----RYD------------RSKEDLNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNS
R+D + K ++ VK LS+EF+MKDLG ++KILG++I RDR S L + Q Y EK++ RFN+ + +PV+ P+ +F+L + S
Subjt: -----RYD------------RSKEDLNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNS
Query: P-SETDIEHKLKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
P S+ +IE+ M +VPYS VGSLMY M+ +RPDL Y+ + V RYM N GK HWK +
Subjt: P-SETDIEHKLKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
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| KAG8493469.1 hypothetical protein CXB51_010771 [Gossypium anomalum] | 1.7e-55 | 34.44 | Show/hide |
Query: GLEALSKQGILP-QDICNKLSFCEHCVLGKARKQSFTKAQHKTKRILDYIYSDLGGPTSTPS-----------------------------LSAQEE---
G+ L K G+L Q IC KL+FCEHCV GK ++ FT+ H TK L+YI+SDL G + PS + A+ +
Subjt: GLEALSKQGILP-QDICNKLSFCEHCVLGKARKQSFTKAQHKTKRILDYIYSDLGGPTSTPS-----------------------------LSAQEE---
Query: -------------------------VKGFKMWHPTNKKFIISRDVHFRETEMFMQGKGSIERNPNATETYTTRIEVENTRNNAQSIDKTTGTDQEQVKNI
VKG+K+W P N+K +ISRDV F ET M PN + + N N Q K GT V+
Subjt: -------------------------VKGFKMWHPTNKKFIISRDVHFRETEMFMQGKGSIERNPNATETYTTRIEVENTRNNAQSIDKTTGTDQEQVKNI
Query: GGEQTGIIEEQPDLSQYSLASDKQRRIIVPPARLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSPR----
+ + + + + + + R LL +VA ++LEL+QLDVKT FLHG L+E IYM QP+GF + KE+ LLKKS+YGLKQSPR
Subjt: GGEQTGIIEEQPDLSQYSLASDKQRRIIVPPARLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSPR----
Query: ---------------YD---------------------------RSKEDLNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRR
+D + K ++ VK L++EF+MKDLG ++KILG++I RDR +S L + Q Y EKV+ R
Subjt: ---------------YD---------------------------RSKEDLNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRR
Query: FNLTTVRPVTLPITQNFKLFAYNSP-SETDIEHKLKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
FN+ +V+PV+ P+ +F+L + SP S+ IE+ M +VPYS VGSLMY+M+ +R DL Y+ + V RYM N K WK +
Subjt: FNLTTVRPVTLPITQNFKLFAYNSP-SETDIEHKLKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
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| KAG8499189.1 hypothetical protein CXB51_005621 [Gossypium anomalum] | 3.0e-57 | 37.96 | Show/hide |
Query: GLEALSKQGILP-QDICNKLSFCEHCVLGKARKQSFTKAQHKTKRILDYIYSDLGGPTSTPS------LSAQEEVKGFKMWHPTNKKFIISRDVHFRETE
G+ LSK+G+L Q IC KL+FCEHCV GK ++ FT+ H TK L+YI+SDL GP+ PS L+ E++ + P+N IS E
Subjt: GLEALSKQGILP-QDICNKLSFCEHCVLGKARKQSFTKAQHKTKRILDYIYSDLGGPTSTPS------LSAQEEVKGFKMWHPTNKKFIISRDVHFRETE
Query: MFMQGKGSIERNPNATETYTTRIEVENTRNNAQSIDKTTGT-DQEQVKNIGGEQTGIIEEQPDLSQYSLASDKQRRIIVPPARLLLSLVAQNNLELDQLD
MF + + N T + + T K GT E+ K + P + + S + + R LL +VA ++LEL+QLD
Subjt: MFMQGKGSIERNPNATETYTTRIEVENTRNNAQSIDKTTGT-DQEQVKNIGGEQTGIIEEQPDLSQYSLASDKQRRIIVPPARLLLSLVAQNNLELDQLD
Query: VKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSPR-------------------YD---------------------------RSKEDL
VKT FLHG L+E IYM QP+GF V KED LLKKS+YGLKQSPR +D + K ++
Subjt: VKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSPR-------------------YD---------------------------RSKEDL
Query: NNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNSP-SETDIEHKLKMENVPYSQVVGSLM
VK LS+EF+MKDLG ++KILG++I RDR S L + Q Y EK++ RFN+ + +PV+ P+ +F+L + SP S+ +IE+ M +VPYS VGSLM
Subjt: NNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNSP-SETDIEHKLKMENVPYSQVVGSLM
Query: YLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
Y M+ +RPDL Y+ + V RYM N GK HWK +
Subjt: YLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
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| RVW25647.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 1.4e-51 | 33.62 | Show/hide |
Query: GIESVTMKLKDGTVKL-HR------NKGLEALSKQGILPQDICNKLSFCEHCVLGKARKQSFTKAQHKTKRILDYIYSDLGGPTSTPSLSAQEEVK----
G S +K GT KL H+ ++GL+ L KQG+L L FCEHCV GKA + F KA H+T+ D+I+SDL P+ PS+ VK
Subjt: GIESVTMKLKDGTVKL-HR------NKGLEALSKQGILPQDICNKLSFCEHCVLGKARKQSFTKAQHKTKRILDYIYSDLGGPTSTPSLSAQEEVK----
Query: ---------GFKMWH---------PTNKKFIISRDVHFRETEMFM-------------------QGKGSIERNPNATETYTTRIEVE----NTRNNAQSI
F++ H T+ K + VH R+ E + G E A R+++E N+
Subjt: ---------GFKMWH---------PTNKKFIISRDVHFRETEMFM-------------------QGKGSIERNPNATETYTTRIEVE----NTRNNAQSI
Query: DKTTGTDQEQVKNIGGEQTGIIEEQPDLSQYSLASDKQRRIIVP--PARLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLL
D+ Q+++ ++ +T + +P + + ++ ++V RLLL+ VA +LELDQLDVKTTFLHG LDE IYM P+GF K+ +LL
Subjt: DKTTGTDQEQVKNIGGEQTGIIEEQPDLSQYSLASDKQRRIIVP--PARLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLL
Query: KKSIYGLKQSPR--------------YDRSKED--------LNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRP
KKS+YGLKQSPR ++RS D +N+ LL DM L S++ILG++I RDR++ +L + Q++Y KV+ RF + V+
Subjt: KKSIYGLKQSPR--------------YDRSKED--------LNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRP
Query: VTLPITQNFKLFAYNSPSETDIEHKLKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
++ P+ Q+F+L +P ET E K ME +PY+ +VGS+MY M+ +RPDL Y+ +++ RYM+ GK HW+ +
Subjt: VTLPITQNFKLFAYNSPSETDIEHKLKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A2N9IB36 CCHC-type domain-containing protein | 5.6e-49 | 31.15 | Show/hide |
Query: NGEFVFMGNNNACNNAGIESVTMKLKDGTVK----------LHRN---------KGLEALSKQGIL--PQDICNKLSFCE---------HCVLG--KARK
N + V MGN+ C G+ ++ +K+ DG V+ + +N KG S+ GI+ + ++ E H LG
Subjt: NGEFVFMGNNNACNNAGIESVTMKLKDGTVK----------LHRN---------KGLEALSKQGIL--PQDICNKLSFCE---------HCVLG--KARK
Query: QSFTKAQHKTKRILDYIYSDLGGPTSTPSLSAQEEVKGFKMWHPTNKKFIISRDVHFRE---TEMFMQGKGSIERNPNATETYTTRIEV--------ENT
+ +K K+K+ + L ++ VKG+K+W P +K +ISRDV F E T+ F + K ++ N T ++E+ E
Subjt: QSFTKAQHKTKRILDYIYSDLGGPTSTPSLSAQEEVKGFKMWHPTNKKFIISRDVHFRE---TEMFMQGKGSIERNPNATETYTTRIEV--------ENT
Query: RNNAQSIDKTTGTDQEQVKNIGGEQT-----------GIIEEQPDLSQ------YSLASDKQRRIIVPPARLLLSLVAQNNLELDQLDVKTTFLHGYLDE
+N Q D T + K G++ ++EE LS+ L K+ + R +L+LVA +LEL+QLDVKT FLHG L+E
Subjt: RNNAQSIDKTTGTDQEQVKNIGGEQT-----------GIIEEQPDLSQ------YSLASDKQRRIIVPPARLLLSLVAQNNLELDQLDVKTTFLHGYLDE
Query: TIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSPR-------------------YD---------------------------RSKEDLNNVKTLLSKEFD
I+MVQP+GF+ G E+L LKKS+YGLKQSPR YD +S ++N +K+LL KEF+
Subjt: TIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSPR-------------------YD---------------------------RSKEDLNNVKTLLSKEFD
Query: MKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNSP-SETDIEHKLKMENVPYSQVVGSLMYLMISTRPDLFY
MKDLG ++KILG++I RDR L + Q Y KV+ +F++ +PV+ P+ +F+L + P +E +IE+ M VPY+ VVG LMY M+ TRPDL +
Subjt: MKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNSP-SETDIEHKLKMENVPYSQVVGSLMYLMISTRPDLFY
Query: SANLVGRYMTNLGKRHWKTL
+ + V RYM N G+ HW +
Subjt: SANLVGRYMTNLGKRHWKTL
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| A0A2N9IN85 Integrase catalytic domain-containing protein | 6.6e-50 | 29.87 | Show/hide |
Query: NGEFVFMGNN----NACNNAGIESVTMKLKDGTVKLHRNKGLEALSKQGILPQDICNKLSFCEHCVLGKARKQSFTKAQHKTKRILDYIYSDLGGPTSTP
NG ++ G+ A ++ ++S +L + G+ LSKQG+L KL FCEHCVLGK + F QHK+K +DYI+SDL P+
Subjt: NGEFVFMGNN----NACNNAGIESVTMKLKDGTVKLHRNKGLEALSKQGILPQDICNKLSFCEHCVLGKARKQSFTKAQHKTKRILDYIYSDLGGPTSTP
Query: S----------------------LSAQEEV-KGFKMWHPTNKKFIISRDVHFR----------ETEMFMQGKGSIE----RNPNATETYTTRIEVEN---
S L + V F W KK + FR E + F + +G + R+P+ T EV +
Subjt: S----------------------LSAQEEV-KGFKMWHPTNKKFIISRDVHFR----------ETEMFMQGKGSIE----RNPNATETYTTRIEVEN---
Query: ------------TRNNAQSIDKTTGTDQEQVKNIGGEQTGIIEEQPDLSQYSLASDKQRRIIVPP-----------------------------------
T + GT + + + + T ++ QYS+A+ +++R I PP
Subjt: ------------TRNNAQSIDKTTGTDQEQVKNIGGEQTGIIEEQPDLSQYSLASDKQRRIIVPP-----------------------------------
Query: ------------------------------------ARLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSP
R+LLS+VA +LEL+QLDVKT FLH L++ IYM QP+GF++QGKE LLKKS+YGLKQSP
Subjt: ------------------------------------ARLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSP
Query: R-------------------YDRSKEDLNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAY
R ++ ++N +KT LS EF+MKDLG ++KILG++I RDR L + +Y EKV+ RF++ +PV+ P+ +FKL A
Subjt: R-------------------YDRSKEDLNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAY
Query: NSPSETDIEHKLKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
SP + EH M VPY+ V S+MY+M+ T PD+ +V RYMTN K HW+ +
Subjt: NSPSETDIEHKLKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
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| A0A438CPX9 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.1e-48 | 28.41 | Show/hide |
Query: NGEFVFMGNNNACNNAGIESVTMKLKDGTVKL-HR------NKGLEALSKQGILPQDICNKLSFCEHCVLGKARKQSFTKAQHKTKRILDYIYSDLGGPT
+G M +G S +K GT KL H+ ++GL+ L KQG+L L FCEHCV GKA + F KA H+T+ LDYI+SDL GP+
Subjt: NGEFVFMGNNNACNNAGIESVTMKLKDGTVKL-HR------NKGLEALSKQGILPQDICNKLSFCEHCVLGKARKQSFTKAQHKTKRILDYIYSDLGGPT
Query: STPSL-------------SAQEE------------------------------------------VKGFKMWHPT--NKKFIISRDVHFRETEMFMQ---
PS+ + QE+ VKG+K+W T K IISRDV F E +M Q
Subjt: STPSL-------------SAQEE------------------------------------------VKGFKMWHPT--NKKFIISRDVHFRETEMFMQ---
Query: ----GKGSIE----------RNPNATETYTTRIEVENTRN-------------------------------------------------------NAQSI
G ++ T + T + E+ + R N+ +
Subjt: ----GKGSIE----------RNPNATETYTTRIEVENTRN-------------------------------------------------------NAQSI
Query: DKTTGTDQEQVKNIGGEQTGIIEEQP------------DLSQYSLASDKQR-------------------RIIVP-----PARLLLSLVAQNNLELDQLD
D+ QE++ ++ +T + +P Q +L ++ R I P RLLL+ VA +LELDQLD
Subjt: DKTTGTDQEQVKNIGGEQTGIIEEQP------------DLSQYSLASDKQR-------------------RIIVP-----PARLLLSLVAQNNLELDQLD
Query: VKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSPR--------------YDRSKED-------------------------------LN
VKTTFLHG LDE IYM P+GF K+ LLKKS+YGLKQSPR ++RS D L
Subjt: VKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSPR--------------YDRSKED-------------------------------LN
Query: NVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNSPSETDIEHKLKMENVPYSQVVGSLMYL
VK +L +F+MKDLG +++ILG++I RDR++ +L + Q++Y KV+ RF + V+ V+ P+ Q+F+L +P E K ME +PY+ +VGS+MY
Subjt: NVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNSPSETDIEHKLKMENVPYSQVVGSLMYL
Query: MISTRPDLFYSANLVGRYMTNLGKRHWKTL
M+ +RPDL Y+ +++ RYM+ K HW+ +
Subjt: MISTRPDLFYSANLVGRYMTNLGKRHWKTL
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| A0A438CR10 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 7.0e-52 | 33.62 | Show/hide |
Query: GIESVTMKLKDGTVKL-HR------NKGLEALSKQGILPQDICNKLSFCEHCVLGKARKQSFTKAQHKTKRILDYIYSDLGGPTSTPSLSAQEEVK----
G S +K GT KL H+ ++GL+ L KQG+L L FCEHCV GKA + F KA H+T+ D+I+SDL P+ PS+ VK
Subjt: GIESVTMKLKDGTVKL-HR------NKGLEALSKQGILPQDICNKLSFCEHCVLGKARKQSFTKAQHKTKRILDYIYSDLGGPTSTPSLSAQEEVK----
Query: ---------GFKMWH---------PTNKKFIISRDVHFRETEMFM-------------------QGKGSIERNPNATETYTTRIEVE----NTRNNAQSI
F++ H T+ K + VH R+ E + G E A R+++E N+
Subjt: ---------GFKMWH---------PTNKKFIISRDVHFRETEMFM-------------------QGKGSIERNPNATETYTTRIEVE----NTRNNAQSI
Query: DKTTGTDQEQVKNIGGEQTGIIEEQPDLSQYSLASDKQRRIIVP--PARLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLL
D+ Q+++ ++ +T + +P + + ++ ++V RLLL+ VA +LELDQLDVKTTFLHG LDE IYM P+GF K+ +LL
Subjt: DKTTGTDQEQVKNIGGEQTGIIEEQPDLSQYSLASDKQRRIIVP--PARLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLL
Query: KKSIYGLKQSPR--------------YDRSKED--------LNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRP
KKS+YGLKQSPR ++RS D +N+ LL DM L S++ILG++I RDR++ +L + Q++Y KV+ RF + V+
Subjt: KKSIYGLKQSPR--------------YDRSKED--------LNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRP
Query: VTLPITQNFKLFAYNSPSETDIEHKLKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
++ P+ Q+F+L +P ET E K ME +PY+ +VGS+MY M+ +RPDL Y+ +++ RYM+ GK HW+ +
Subjt: VTLPITQNFKLFAYNSPSETDIEHKLKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
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| Q6L4X8 Putative polyprotein | 1.9e-49 | 28.6 | Show/hide |
Query: GLEALSKQGILPQDICNKLSFCEHCVLGKARKQSFTKAQHKTKRILDYIYSDLGGPTS------------------TP----------------------
GL LSK+G+L KL FCEHC+ GK ++ F + H T+ ILDY++SDL G S TP
Subjt: GLEALSKQGILPQDICNKLSFCEHCVLGKARKQSFTKAQHKTKRILDYIYSDLGGPTS------------------TP----------------------
Query: ----------------SLSAQEEVKGFKMWHPTNKKFIISRDVHFRETEMFMQGKGSIERNPNATETYTTRIEVENTRNNAQSIDKTTGTDQEQVKNIGG
L VK +K+W P KK +ISR+V F E+ M + K S N ++VE+ ++ + +K + I
Subjt: ----------------SLSAQEEVKGFKMWHPTNKKFIISRDVHFRETEMFMQGKGSIERNPNATETYTTRIEVENTRNNAQSIDKTTGTDQEQVKNIGG
Query: EQTGIIEEQPDLSQYSLASDKQRRIIVPP-----------------------------------------------------------------------
+ +++ P + S+A DK +R I PP
Subjt: EQTGIIEEQPDLSQYSLASDKQRRIIVPP-----------------------------------------------------------------------
Query: ------------------------------------------------ARLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYL
R LLS+VA ++ EL+Q+DVKT FLHG L+E IYM QP+GF V GKE+L Y
Subjt: ------------------------------------------------ARLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYL
Query: LKKSIYGLKQSPR-------------------YD--------------------------RSKEDLNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQS
LKKS+YGLKQSPR YD + K ++ +K LS EF+MKDLG ++KILG++ITR+R+
Subjt: LKKSIYGLKQSPR-------------------YD--------------------------RSKEDLNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQS
Query: ILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNSP-SETDIEHKLKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
L + Q Y EKV+RRFN+ +PV+ P+ +F+L + P S+ DIE+ M VPY VVGSLMY M+ +R DL ++ ++V RYM N GK HWK +
Subjt: ILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNSP-SETDIEHKLKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 6.2e-21 | 30.4 | Show/hide |
Query: RLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSPR--------------YDRSKED---------------
R +LSLV Q NL++ Q+DVKT FL+G L E IYM P+G + D L K+IYGLKQ+ R + S D
Subjt: RLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSPR--------------YDRSKED---------------
Query: ------------------LNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNSPSETDIE
+NN K L ++F M DL E + +GI I ++ LS QS Y +K++ +FN+ V+ P+ NS +
Subjt: ------------------LNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNSPSETDIE
Query: HKLKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
N P ++G LMY+M+ TRPDL + N++ RY + W+ L
Subjt: HKLKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 4.1e-41 | 39.76 | Show/hide |
Query: RLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSPR-----YDRSKEDLNNVKTL-----------------
R +LSL A +LE++QLDVKT FLHG L+E IYM QP+GFEV GK+ + L KS+YGLKQ+PR +D + +KT
Subjt: RLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSPR-----YDRSKEDLNNVKTL-----------------
Query: ------------------------LSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNSPSETDIEH
LSK FDMKDLG +++ILG+ I R+R L + Q Y E+V+ RFN+ +PV+ P+ + KL P T +E
Subjt: ------------------------LSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNSPSETDIEH
Query: KLKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
K M VPYS VGSLMY M+ TRPD+ ++ +V R++ N GK HW+ +
Subjt: KLKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
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| P25600 Putative transposon Ty5-1 protein YCL074W | 2.8e-13 | 27.6 | Show/hide |
Query: LDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSP------------------------RYDRSKED---------------------
+DV T FL+ +DE IY+ QP GF + D + L +YGLKQ+P Y RS D
Subjt: LDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSP------------------------RYDRSKED---------------------
Query: LNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNSPSETDIEHKLKMENVPYSQVVGSLM
+ VK L+K + MKDLG+ K LG++I + N I ++ Y K + T + P+ + LF SP DI PY +VG L+
Subjt: LNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNSPSETDIEHKLKMENVPYSQVVGSLM
Query: YLMISTRPDLFYSANLVGRYM
+ + RPD+ Y +L+ R++
Subjt: YLMISTRPDLFYSANLVGRYM
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.7e-15 | 28.23 | Show/hide |
Query: RLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSPR--------------YDRSKED---------------
R++L + + + QLDV FL G L + +YM QP GF + + + L+K++YGLKQ+PR + S D
Subjt: RLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSPR--------------YDRSKED---------------
Query: ----------------LNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNSPSETDIEHK
L+N LS+ F +KD E LGI+ R + L + Q Y ++ R N+ T +PVT P+ + KL Y+ TD
Subjt: ----------------LNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNSPSETDIEHK
Query: LKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
Y +VGSL YL TRPD+ Y+ N + ++M + H + L
Subjt: LKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 8.6e-15 | 27.82 | Show/hide |
Query: RLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSPR--------------YDRSKED---------------
R++L + + + QLDV FL G L + +YM QP GF + + D L+K+IYGLKQ+PR + S D
Subjt: RLLLSLVAQNNLELDQLDVKTTFLHGYLDETIYMVQPKGFEVQGKEDLYYLLKKSIYGLKQSPR--------------YDRSKED---------------
Query: ----------------LNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNSPSETDIEHK
L + LS+ F +K+ + LGI+ R L + Q Y ++ R N+ T +PV P+ + KL ++ D
Subjt: ----------------LNNVKTLLSKEFDMKDLGESRKILGIDITRDRNQSILSIGQSTYCEKVIRRFNLTTVRPVTLPITQNFKLFAYNSPSETDIEHK
Query: LKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
Y +VGSL YL TRPDL Y+ N + +YM HW L
Subjt: LKMENVPYSQVVGSLMYLMISTRPDLFYSANLVGRYMTNLGKRHWKTL
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