; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G20560 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G20560
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationChr4:18815378..18816517
RNA-Seq ExpressionCSPI04G20560
SyntenyCSPI04G20560
Gene Ontology termsGO:0009987 - cellular process (biological process)
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR041588 - Integrase zinc-binding domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041253.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.7e-9555.03Show/hide
Query:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----PKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDR
        +RGFLGLTGYYRRFVQNYG+I+ PL QLLK+GAYKW+ E E +F KLK+AMMTL     P F+LPFEIE DASG+GVG VL QAK+P++YFS+ LSMRDR
Subjt:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----PKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDR

Query:  SRPVYERELIAVVFAVQGWRPGLLGR--------------------------------------------------------------------------
        +RPVYERELIAVV+AVQ WRP LLGR                                                                          
Subjt:  SRPVYERELIAVVFAVQGWRPGLLGR--------------------------------------------------------------------------

Query:  --REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR
          +E+ +DP L+E  S +E+   +IP+++ HQG+L+FKGRLV+SKTS+L+ TI+HTYHDSVFGGHSGFLRTYKRM GELYW GMK D +KYC EC+ICQ+
Subjt:  --REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR

Query:  NKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAG
        NK+ ALSP GLL+PLEIPD I SDISMDFI+GLPK+ G
Subjt:  NKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAG

KAA0063300.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.9e-9756.21Show/hide
Query:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----PKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDR
        +RGFLGLTGYYRRFVQNYG+I+ PLIQLLKAGAYKW+ E E +F KLK+AMMTL     P F+LPFEIE DASG+GVG VL QAK+P++YFS+ LSMRDR
Subjt:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----PKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDR

Query:  SRPVYERELIAVVFAVQGWRPGLLGR--------------------------------------------------------------------------
        +RPVYERELIAVV+AVQ WRP LLGR                                                                          
Subjt:  SRPVYERELIAVVFAVQGWRPGLLGR--------------------------------------------------------------------------

Query:  --REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR
          RE+ +DP L+E  S +E+   +IP ++ HQG+L+FKGRLV+SKTS L+ TI+HTYHDSVFGGHSGFLRTYKRM GELYW GMK D +KYC EC+ICQ+
Subjt:  --REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR

Query:  NKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAG
        NK+ ALSP GLL+PLEIPD IWSDISMDFI GLPK+ G
Subjt:  NKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAG

TYK15990.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.2e-9554.44Show/hide
Query:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----PKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDR
        +RGFLGLTGYYRRFVQNYG+I+ PL QLLK+GAYKW+ E E +F KLK+AMMTL     P F+LPFEIE DASG+GVG VL Q KKP++YFS+ LS RDR
Subjt:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----PKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDR

Query:  SRPVYERELIAVVFAVQGWRPGLLGR--------------------------------------------------------------------------
        +RPVYEREL+AVV+AVQ WRP LLGR                                                                          
Subjt:  SRPVYERELIAVVFAVQGWRPGLLGR--------------------------------------------------------------------------

Query:  --REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR
          +E+ +DP L+E  S +E+   +IP+++ HQG+L+FKGRLV+SK S+L+ TI+HTYHDSVFGGHSGFLRTYKRM GELYW GMK D +KYC EC+ICQ+
Subjt:  --REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR

Query:  NKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAG
        NK+ ALSP GLL+PLEIPD IWSDISMDFI+GLPK+ G
Subjt:  NKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAG

TYK16053.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]4.7e-9555.03Show/hide
Query:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----PKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDR
        +RGFLGLTGYYRRFVQNYG+I+ PL QLLK+GAYKW+ E E +F KLK+AMMTL     P F+LPFEIE DASG+GVG VL QAK+P++YFS+ LSMRDR
Subjt:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----PKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDR

Query:  SRPVYERELIAVVFAVQGWRPGLLGR--------------------------------------------------------------------------
        +RPVYERELIAVV+AVQ WRP LLGR                                                                          
Subjt:  SRPVYERELIAVVFAVQGWRPGLLGR--------------------------------------------------------------------------

Query:  --REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR
          +E+ +DP L+E  S +E+   +IP+++ HQG+L+FKGRLV+SKTS+L+ TI+HTYHDSVFGGHSGFLRTYKRM GELYW GMK D +KYC EC+ICQ+
Subjt:  --REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR

Query:  NKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAG
        NK+ ALSP GLL+PLEIPD I SDISMDFI+GLPK+ G
Subjt:  NKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAG

TYK23090.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]6.2e-9554.44Show/hide
Query:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----PKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDR
        +RGFLGLTGYYRRFVQNYG+I+ PL QLLK+GAYKW+ E E +F KLK+AMMTL     P F+LPFEIE DASG+GVG VL Q KKP++YFS+ LS RDR
Subjt:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----PKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDR

Query:  SRPVYERELIAVVFAVQGWRPGLLGR--------------------------------------------------------------------------
        +RPVYEREL+AVV+AVQ WRP LLGR                                                                          
Subjt:  SRPVYERELIAVVFAVQGWRPGLLGR--------------------------------------------------------------------------

Query:  --REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR
          +E+ +DP L+E  S +E+   +IP+++ HQG+L+FKGRLV+SK S+L+ TI+HTYHDSVFGGHSGFLRTYKRM GELYW GMK D +KYC EC+ICQ+
Subjt:  --REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR

Query:  NKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAG
        NK+ ALSP GLL+PLEIPD IWSDISMDFI+GLPK+ G
Subjt:  NKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAG

TrEMBL top hitse value%identityAlignment
A0A5A7TDM4 Ty3/gypsy retrotransposon protein2.3e-9555.03Show/hide
Query:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----PKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDR
        +RGFLGLTGYYRRFVQNYG+I+ PL QLLK+GAYKW+ E E +F KLK+AMMTL     P F+LPFEIE DASG+GVG VL QAK+P++YFS+ LSMRDR
Subjt:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----PKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDR

Query:  SRPVYERELIAVVFAVQGWRPGLLGR--------------------------------------------------------------------------
        +RPVYERELIAVV+AVQ WRP LLGR                                                                          
Subjt:  SRPVYERELIAVVFAVQGWRPGLLGR--------------------------------------------------------------------------

Query:  --REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR
          +E+ +DP L+E  S +E+   +IP+++ HQG+L+FKGRLV+SKTS+L+ TI+HTYHDSVFGGHSGFLRTYKRM GELYW GMK D +KYC EC+ICQ+
Subjt:  --REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR

Query:  NKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAG
        NK+ ALSP GLL+PLEIPD I SDISMDFI+GLPK+ G
Subjt:  NKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAG

A0A5A7U2S1 Ty3/gypsy retrotransposon protein3.0e-9554.44Show/hide
Query:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----PKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDR
        +RGFLGLTGYYRRFVQNYG+I+ PL QLLK+GAYKW+ E E +F KLK+AMMTL     P F+LPFEIE DASG+GVG VL Q KKP++YFS+ LS RDR
Subjt:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----PKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDR

Query:  SRPVYERELIAVVFAVQGWRPGLLGR--------------------------------------------------------------------------
        +RPVYEREL+AVV+AVQ WRP LLGR                                                                          
Subjt:  SRPVYERELIAVVFAVQGWRPGLLGR--------------------------------------------------------------------------

Query:  --REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR
          +E+ +DP L+E  S +E+   +IP+++ HQG+L+FKGRLV+SK S+L+ TI+HTYHDSVFGGHSGFLRTYKRM GELYW GMK D +KYC EC+ICQ+
Subjt:  --REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR

Query:  NKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAG
        NK+ ALSP GLL+PLEIPD IWSDISMDFI+GLPK+ G
Subjt:  NKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAG

A0A5A7V7S9 Ty3/gypsy retrotransposon protein1.9e-9756.21Show/hide
Query:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----PKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDR
        +RGFLGLTGYYRRFVQNYG+I+ PLIQLLKAGAYKW+ E E +F KLK+AMMTL     P F+LPFEIE DASG+GVG VL QAK+P++YFS+ LSMRDR
Subjt:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----PKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDR

Query:  SRPVYERELIAVVFAVQGWRPGLLGR--------------------------------------------------------------------------
        +RPVYERELIAVV+AVQ WRP LLGR                                                                          
Subjt:  SRPVYERELIAVVFAVQGWRPGLLGR--------------------------------------------------------------------------

Query:  --REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR
          RE+ +DP L+E  S +E+   +IP ++ HQG+L+FKGRLV+SKTS L+ TI+HTYHDSVFGGHSGFLRTYKRM GELYW GMK D +KYC EC+ICQ+
Subjt:  --REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR

Query:  NKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAG
        NK+ ALSP GLL+PLEIPD IWSDISMDFI GLPK+ G
Subjt:  NKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAG

A0A5D3CW07 Transposon Ty3-G Gag-Pol polyprotein2.3e-9555.03Show/hide
Query:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----PKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDR
        +RGFLGLTGYYRRFVQNYG+I+ PL QLLK+GAYKW+ E E +F KLK+AMMTL     P F+LPFEIE DASG+GVG VL QAK+P++YFS+ LSMRDR
Subjt:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----PKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDR

Query:  SRPVYERELIAVVFAVQGWRPGLLGR--------------------------------------------------------------------------
        +RPVYERELIAVV+AVQ WRP LLGR                                                                          
Subjt:  SRPVYERELIAVVFAVQGWRPGLLGR--------------------------------------------------------------------------

Query:  --REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR
          +E+ +DP L+E  S +E+   +IP+++ HQG+L+FKGRLV+SKTS+L+ TI+HTYHDSVFGGHSGFLRTYKRM GELYW GMK D +KYC EC+ICQ+
Subjt:  --REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR

Query:  NKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAG
        NK+ ALSP GLL+PLEIPD I SDISMDFI+GLPK+ G
Subjt:  NKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAG

A0A5D3CXB1 Ty3/gypsy retrotransposon protein3.0e-9554.44Show/hide
Query:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----PKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDR
        +RGFLGLTGYYRRFVQNYG+I+ PL QLLK+GAYKW+ E E +F KLK+AMMTL     P F+LPFEIE DASG+GVG VL Q KKP++YFS+ LS RDR
Subjt:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTL-----PKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDR

Query:  SRPVYERELIAVVFAVQGWRPGLLGR--------------------------------------------------------------------------
        +RPVYEREL+AVV+AVQ WRP LLGR                                                                          
Subjt:  SRPVYERELIAVVFAVQGWRPGLLGR--------------------------------------------------------------------------

Query:  --REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR
          +E+ +DP L+E  S +E+   +IP+++ HQG+L+FKGRLV+SK S+L+ TI+HTYHDSVFGGHSGFLRTYKRM GELYW GMK D +KYC EC+ICQ+
Subjt:  --REIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSD-KKYCAECLICQR

Query:  NKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAG
        NK+ ALSP GLL+PLEIPD IWSDISMDFI+GLPK+ G
Subjt:  NKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAG

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.64.1e-1738.52Show/hide
Query:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAY--KWSAEAEISFAKLK-----RAMMTLPKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMR
        ++ FLGLTGYYR+F+ N+ +IA P+ + LK        + E + +F KLK       ++ +P F+  F +  DAS   +G VL+Q   P+SY SRTL+  
Subjt:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAY--KWSAEAEISFAKLK-----RAMMTLPKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMR

Query:  DRSRPVYERELIAVVFAVQGWRPGLLGRR-EIDRD
        + +    E+EL+A+V+A + +R  LLGR  EI  D
Subjt:  DRSRPVYERELIAVVFAVQGWRPGLLGRR-EIDRD

P10401 Retrovirus-related Pol polyprotein from transposon gypsy2.7e-1630.73Show/hide
Query:  RVRGFLGLTGYYRRFVQNYGNIAGPLIQLLK----AGAYKWSAEAEISFAKLKR--------------AMMTLPKFSLPFEIEMDASGYGVGVVLTQAKK
        +VR FLGL  YYR F++++  IA P+  +LK    + +   S +  + F + +R               ++  P F  PF++  DAS  G+G VL+Q  +
Subjt:  RVRGFLGLTGYYRRFVQNYGNIAGPLIQLLK----AGAYKWSAEAEISFAKLKR--------------AMMTLPKFSLPFEIEMDASGYGVGVVLTQAKK

Query:  PISYFSRTLSMRDRSRPVYERELIAVVFAVQGWRPGLLGRREI----DRDP------------KLKEFKSTVEKHQSDI
        PI+  SRTL   +++    EREL+A+V+A+   +  L G REI    D  P            K+K +KS +++H + +
Subjt:  PISYFSRTLSMRDRSRPVYERELIAVVFAVQGWRPGLLGRREI----DRDP------------KLKEFKSTVEKHQSDI

P20825 Retrovirus-related Pol polyprotein from transposon 2971.1e-1732.78Show/hide
Query:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEI--SFAKLKR-----AMMTLPKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMR
        +R FLGLTGYYR+F+ NY +IA P+   LK      + + E   +F KLK       ++ LP F   F +  DAS   +G VL+Q   PIS+ SRTL+  
Subjt:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEI--SFAKLKR-----AMMTLPKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMR

Query:  DRSRPVYERELIAVVFAVQGWRPGLLGRR-EIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTI
        + +    E+EL+A+V+A + +R  LLGR+  I  D +   +   +++  + +  + +     QFK   +  K +S+   +
Subjt:  DRSRPVYERELIAVVFAVQGWRPGLLGRR-EIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTI

P92523 Uncharacterized mitochondrial protein AtMg008602.1e-1357.14Show/hide
Query:  TDRVRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTLPKFSLP
        T  +RGFLGLTGYYRRFV+NYG I  PL +LLK  + KW+  A ++F  LK A+ TLP  +LP
Subjt:  TDRVRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTLPKFSLP

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus7.2e-1429.12Show/hide
Query:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAY---KWSAEAEI----------SFAKLKRAM-----MTLPKFSLPFEIEMDASGYGVGVVLTQ----
        ++ FLG+T YYR+F+Q+Y  +A PL  L + G Y   K S  +++          SF  LK  +     +  P F+ PF +  DAS + +G VL+Q    
Subjt:  VRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAY---KWSAEAEI----------SFAKLKRAM-----MTLPKFSLPFEIEMDASGYGVGVVLTQ----

Query:  AKKPISYFSRTLSMRDRSRPVYERELIAVVFAVQGWRPGLLGRREI----DRDP------------KLKEFKSTVEKHQSDI
          +PI+Y SR+L+  + +    E+E++A+++++   R  L G   I    D  P            KLK +K+ +E++  ++
Subjt:  AKKPISYFSRTLSMRDRSRPVYERELIAVVFAVQGWRPGLLGRREI----DRDP------------KLKEFKSTVEKHQSDI

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.5e-1457.14Show/hide
Query:  TDRVRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTLPKFSLP
        T  +RGFLGLTGYYRRFV+NYG I  PL +LLK  + KW+  A ++F  LK A+ TLP  +LP
Subjt:  TDRVRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTLPKFSLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTTTTGCCAAGTCACGGATAGGGTACGAGGATTTCTAGGATTGACTGGTTATTATAGAAGATTTGTCCAAAATTATGGTAATATTGCCGGACCATTAATTCAGTT
ATTGAAAGCGGGTGCCTACAAATGGAGTGCAGAAGCTGAAATCTCCTTTGCAAAATTGAAGAGGGCAATGATGACTTTGCCGAAATTTAGTTTGCCATTCGAAATAGAAA
TGGATGCTTCGGGGTATGGAGTTGGGGTAGTCTTGACACAAGCTAAGAAACCTATTTCTTACTTTAGTCGAACTCTGAGTATGAGAGATAGATCGCGGCCAGTTTATGAA
AGAGAGTTGATTGCCGTGGTGTTTGCAGTTCAAGGGTGGCGGCCAGGTTTGTTGGGAAGAAGAGAGATAGACCGAGATCCGAAGTTGAAGGAGTTCAAAAGCACTGTGGA
GAAACACCAATCTGATATTCCAAATTTTTCGATACATCAAGGTGTGTTGCAGTTTAAGGGAAGGTTAGTTATTTCCAAAACTTCATCTCTCTTATCCACTATTTTGCATA
CCTACCATGATTCGGTGTTTGGAGGGCATTCTGGATTTTTGCGAACATATAAGAGAATGATGGGAGAATTATATTGGGATGGAATGAAGAGTGACAAAAAATATTGTGCG
GAATGTTTGATTTGTCAAAGAAATAAAACATTGGCTCTTTCACCAGTAGGGTTATTGATTCCATTAGAAATTCCTGATACTATATGGAGTGATATTTCTATGGATTTTAT
AGATGGATTACCCAAGGCTGCTGGACTTTGTGATGGTGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGTTTTGCCAAGTCACGGATAGGGTACGAGGATTTCTAGGATTGACTGGTTATTATAGAAGATTTGTCCAAAATTATGGTAATATTGCCGGACCATTAATTCAGTT
ATTGAAAGCGGGTGCCTACAAATGGAGTGCAGAAGCTGAAATCTCCTTTGCAAAATTGAAGAGGGCAATGATGACTTTGCCGAAATTTAGTTTGCCATTCGAAATAGAAA
TGGATGCTTCGGGGTATGGAGTTGGGGTAGTCTTGACACAAGCTAAGAAACCTATTTCTTACTTTAGTCGAACTCTGAGTATGAGAGATAGATCGCGGCCAGTTTATGAA
AGAGAGTTGATTGCCGTGGTGTTTGCAGTTCAAGGGTGGCGGCCAGGTTTGTTGGGAAGAAGAGAGATAGACCGAGATCCGAAGTTGAAGGAGTTCAAAAGCACTGTGGA
GAAACACCAATCTGATATTCCAAATTTTTCGATACATCAAGGTGTGTTGCAGTTTAAGGGAAGGTTAGTTATTTCCAAAACTTCATCTCTCTTATCCACTATTTTGCATA
CCTACCATGATTCGGTGTTTGGAGGGCATTCTGGATTTTTGCGAACATATAAGAGAATGATGGGAGAATTATATTGGGATGGAATGAAGAGTGACAAAAAATATTGTGCG
GAATGTTTGATTTGTCAAAGAAATAAAACATTGGCTCTTTCACCAGTAGGGTTATTGATTCCATTAGAAATTCCTGATACTATATGGAGTGATATTTCTATGGATTTTAT
AGATGGATTACCCAAGGCTGCTGGACTTTGTGATGGTGGATAG
Protein sequenceShow/hide protein sequence
MQFCQVTDRVRGFLGLTGYYRRFVQNYGNIAGPLIQLLKAGAYKWSAEAEISFAKLKRAMMTLPKFSLPFEIEMDASGYGVGVVLTQAKKPISYFSRTLSMRDRSRPVYE
RELIAVVFAVQGWRPGLLGRREIDRDPKLKEFKSTVEKHQSDIPNFSIHQGVLQFKGRLVISKTSSLLSTILHTYHDSVFGGHSGFLRTYKRMMGELYWDGMKSDKKYCA
ECLICQRNKTLALSPVGLLIPLEIPDTIWSDISMDFIDGLPKAAGLCDGG