CuGenDBv2

Gene ID	CSPI04G20610
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Mitochondrial ribosomal protein L37
Genome location	Chr4:18840451..18843586
RNA-Seq Expression	CSPI04G20610
Synteny	CSPI04G20610
Gene Ontology terms	GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR013870 - Ribosomal protein L37, mitochondrial

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAE8649745.1 hypothetical protein Csa_012025 [Cucumis sativus]

6.7e-63

100

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Query:  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK
        MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK
Subjt:  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK

Query:  NAESLPYADLKRFIKLDTRARIKENNSIKAK
        NAESLPYADLKRFIKLDTRARIKENNSIKAK
Subjt:  NAESLPYADLKRFIKLDTRARIKENNSIKAK

XP_004144674.3 39S ribosomal protein L54, mitochondrial [Cucumis sativus]

6.7e-63

100

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Query:  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK
        MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK
Subjt:  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK

Query:  NAESLPYADLKRFIKLDTRARIKENNSIKAK
        NAESLPYADLKRFIKLDTRARIKENNSIKAK
Subjt:  NAESLPYADLKRFIKLDTRARIKENNSIKAK

XP_008442187.1 PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo]

2.0e-59

93.89

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Query:  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK
        +SQIR FRRNIIVSSK+LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLW+LL+KHPPLSELRRK
Subjt:  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK

Query:  NAESLPYADLKRFIKLDTRARIKENNSIKAK
        NAESLPYADL+RF+KLDTRARIKENNSIKAK
Subjt:  NAESLPYADLKRFIKLDTRARIKENNSIKAK

XP_016899597.1 PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo]

2.0e-59

93.89

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Query:  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK
        +SQIR FRRNIIVSSK+LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLW+LL+KHPPLSELRRK
Subjt:  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK

Query:  NAESLPYADLKRFIKLDTRARIKENNSIKAK
        NAESLPYADL+RF+KLDTRARIKENNSIKAK
Subjt:  NAESLPYADLKRFIKLDTRARIKENNSIKAK

XP_038883607.1 54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida]

5.2e-55

89.31

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Query:  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK
        MSQIRLFRR+ IV+SK+LIQLTSVRTFAAGGKSKKGSKGGAAADAPKAS LSKEVKSTTVVGANILKEGADPKIMADSEYP WLW+LL+KHPPLSELRRK
Subjt:  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK

Query:  NAESLPYADLKRFIKLDTRARIKENNSIKAK
        N E+LPY DLKRF+KLDTRA+IKENNS KAK
Subjt:  NAESLPYADLKRFIKLDTRARIKENNSIKAK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYS4 Uncharacterized protein

4.3e-63

99.24

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Query:  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK
        MSQ+RLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK
Subjt:  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK

Query:  NAESLPYADLKRFIKLDTRARIKENNSIKAK
        NAESLPYADLKRFIKLDTRARIKENNSIKAK
Subjt:  NAESLPYADLKRFIKLDTRARIKENNSIKAK

A0A1S3B544 54S ribosomal protein L37, mitochondrial isoform X2

9.8e-60

93.89

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Query:  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK
        +SQIR FRRNIIVSSK+LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLW+LL+KHPPLSELRRK
Subjt:  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK

Query:  NAESLPYADLKRFIKLDTRARIKENNSIKAK
        NAESLPYADL+RF+KLDTRARIKENNSIKAK
Subjt:  NAESLPYADLKRFIKLDTRARIKENNSIKAK

A0A1S4DUD4 39S ribosomal protein L54, mitochondrial isoform X1

9.8e-60

93.89

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Query:  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK
        +SQIR FRRNIIVSSK+LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLW+LL+KHPPLSELRRK
Subjt:  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK

Query:  NAESLPYADLKRFIKLDTRARIKENNSIKAK
        NAESLPYADL+RF+KLDTRARIKENNSIKAK
Subjt:  NAESLPYADLKRFIKLDTRARIKENNSIKAK

A0A5D3CXE8 39S ribosomal protein L54

9.8e-60

93.89

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Query:  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK
        +SQIR FRRNIIVSSK+LIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLW+LL+KHPPLSELRRK
Subjt:  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK

Query:  NAESLPYADLKRFIKLDTRARIKENNSIKAK
        NAESLPYADL+RF+KLDTRARIKENNSIKAK
Subjt:  NAESLPYADLKRFIKLDTRARIKENNSIKAK

A0A6J1JQ61 54S ribosomal protein L37, mitochondrial-like

4.6e-49

81.68

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Query:  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK
        MSQIRLFRR+++ ++K+LI+LT+VRTFAAGGK KKGSKGGAA DAPKASILSKEVKSTTVVGANILKEGADPK+MADSEYP WLW L++K P LSELRRK
Subjt:  MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRK

Query:  NAESLPYADLKRFIKLDTRARIKENNSIKAK
        +A++LPY DLKRF+KLDTRARIKENNS KAK
Subjt:  NAESLPYADLKRFIKLDTRARIKENNSIKAK

SwissProt top hits

e value

%identity

Alignment

Q9CPW3 39S ribosomal protein L54, mitochondrial

6.0e-06

38.54

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Query:  KGSKGGAAADAPK-ASILSKEVKSTT-VVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRARIKENNSI
        KG KGG AA+A K   + +   + TT  +G NI KEG D  + ADSEYP WL+  +N  PP  +L     ES  Y  L R   +    R+ +N  +
Subjt:  KGSKGGAAADAPK-ASILSKEVKSTT-VVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADLKRFIKLDTRARIKENNSI

Arabidopsis top hits

e value

%identity

Alignment

AT3G01740.1 Mitochondrial ribosomal protein L37

2.2e-40

65.91

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Query:  MSQIRLFRRNIIVSSKNLIQLTSVRTF-AAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRR
        M++I L R +   SSK++++    RTF AA  K+KKG KGG A+DAPK S L+KE+KSTTVVGAN LK+G+DPKI+ DS+YP WLW+LL+K P LSELRR
Subjt:  MSQIRLFRRNIIVSSKNLIQLTSVRTF-AAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRR

Query:  KNAESLPYADLKRFIKLDTRARIKENNSIKAK
        KN E+LPY DLKRF+KLDTR +IKENNSIKAK
Subjt:  KNAESLPYADLKRFIKLDTRARIKENNSIKAK

AT5G14290.1 Mitochondrial ribosomal protein L37

2.4e-34

59.85

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Query:  MSQIRLFRRNIIVSSKNLIQLTSVRTFA-AGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRR
        M+ IR+F  + I  SK++++    RTFA A GK+KK  +G    DAPKAS LSKE+KS+ VV AN LK+G DPKI+ +S++P +LW+LL+K P LSELRR
Subjt:  MSQIRLFRRNIIVSSKNLIQLTSVRTFA-AGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRR

Query:  KNAESLPYADLKRFIKLDTRARIKENNSIKAK
        KN E+L + DLKRF+KLDTRARIKEN+SIKAK
Subjt:  KNAESLPYADLKRFIKLDTRARIKENNSIKAK

Sequences

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CDS sequence

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ATGAGCCAAATTAGATTGTTTAGAAGGAACATTATTGTTAGTAGCAAAAATCTAATACAACTGACATCGGTACGAACATTTGCTGCCGGAGGCAAATCAAAGAAGGGATC
TAAAGGGGGTGCAGCTGCCGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTGAAATCTACGACTGTAGTTGGTGCCAATATTCTGAAGGAAGGTGCAGATCCAAAAA
TTATGGCAGACTCGGAGTATCCTGCTTGGCTGTGGAATTTGCTTAATAAGCATCCACCTCTGAGTGAATTACGAAGAAAGAATGCTGAAAGTCTTCCCTACGCAGATCTC
AAACGCTTTATTAAATTGGATACTCGAGCAAGGATCAAGGAAAACAATTCTATTAAGGCCAAGTAA

mRNA sequence

Show/hide mRNA sequence

CTTTAGGGTTTATTACCTTTGTTTCTTTAAACCCACCACCAGTAGCAGCCACCTCCATCTCACTCATCTCGCATCTCCTCTTTCGTCCCCTCTTCTTCCATCTCTTTGAT
CTCCAACGCCACGCGGCCAATATCAATCGTCTCCTCTTCTTCCATCTCTCAACACACTTCCCAACATCAATCCAAAATCAAACTAGCACAAGCCATGAACTTGAAGAAAT
GAAAAATTGAAAGATAATAAAATTTCAATCTTACGAATTTTAAGAGGAGAGGGGAAAAACATCAGCAGGCGTACGAGAGCTGACTACGGAGGCAAGCGAGAGAAAAAGAA
AAATATGAGCCAAATTAGATTGTTTAGAAGGAACATTATTGTTAGTAGCAAAAATCTAATACAACTGACATCGGTACGAACATTTGCTGCCGGAGGCAAATCAAAGAAGG
GATCTAAAGGGGGTGCAGCTGCCGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTGAAATCTACGACTGTAGTTGGTGCCAATATTCTGAAGGAAGGTGCAGATCCA
AAAATTATGGCAGACTCGGAGTATCCTGCTTGGCTGTGGAATTTGCTTAATAAGCATCCACCTCTGAGTGAATTACGAAGAAAGAATGCTGAAAGTCTTCCCTACGCAGA
TCTCAAACGCTTTATTAAATTGGATACTCGAGCAAGGATCAAGGAAAACAATTCTATTAAGGCCAAGTAACAATATAGTAGACGAAGACTTTCTTTTTGTTTCTTTTGTG
AATGTAATGCAACTCTTTCTCAAACTCTGCATCAATGTGCAAGTCCTGACTTGCATTCTCTCCCTTTTATTTTTCTAAGCCATTTTAATGTACTACTTTCAGATTAAATT
CGCCCAGTTTGGCTTAATTTGAAGACCAATCTTGTTATTTTTCTTTTGCTTTTGCAGTAAAAAATGAGAGTGGGAGAAGTCAAGTCAATCTTGTTATATTTCTTTCGAAT
GCATAAATGTCCCCTTTGAGCAAATTTATGAAAATAGAATCTAAAAGTTTTTTTTGTTTTTTTAAACAACAGTTTCCATGGAAATCCACACCTTTGAAGCTTTATATTTG
AAATTAAACAAGTTTCATACGTTTCCCTTGCTAAGTGTGTATATATATATATGTTTCCCTGATGATTGCATTTTCACCGATTATTCAAAATTACATTAACATAATTCTCA
AAAAAGAAGAAGAGAGAATTAAGATAATTCTCATAAGCAAAATTAAGAAGAGTGTTCATGATTGTAATGGAGCTCTGCACAATGGGCAAGAGTTGTTGATTTGAAGCCAT
GTAAGGATGCATGATTTGTGATACACGTGACACCACATGGAATCCTACTCACTTCCTTCCCCTTTCCTTGTAGCTCTTCATAACAAACACTGCAATCTCCAATTTCTTCT
TCTTTCTTCTTTATTGAACCCATCAAATTTCTGCGTCATTAGTCTCTCAATTGCAAACTCCGGGCACCCCTGTTGTCCTTGGGGGTGGAGGAGTTTCTTGAAATCCTTGC
TCTCCGATAATCAAGTCATCCATATTAGCGATGTTGGCTTCAATTTTCAAGCTCGGAGGAATGGCACAAAACTGTAGAGCAAAGGAGAGAAT

Protein sequence

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MSQIRLFRRNIIVSSKNLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNKHPPLSELRRKNAESLPYADL
KRFIKLDTRARIKENNSIKAK

CSPI04G20610 (gene) of Cucumber (PI 183967) v1 genome