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CSPI04G20660 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G20660
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationChr4:18879851..18880259
RNA-Seq ExpressionCSPI04G20660
SyntenyCSPI04G20660
Gene Ontology termsGO:0048507 - meristem development (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038951.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]6.0e-2456.73Show/hide
Query:  IQQFDRDMTREYINWYINITRFYITRPGATMGH----------QIHYPQQVLDIFNNNERYMKELHYKYNILIIPPSIHKGCVGVEETEVNEVCHNVKEV
        IQQFD D+T+EYI+WY NITR YITRP A +GH              PQQVL+I NNN+RYM+E+H  Y++ I+PP +H+G V VEE E++EV HNV+EV
Subjt:  IQQFDRDMTREYINWYINITRFYITRPGATMGH----------QIHYPQQVLDIFNNNERYMKELHYKYNILIIPPSIHKGCVGVEETEVNEVCHNVKEV

Query:  PPMT
        PP T
Subjt:  PPMT

KAA0054576.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]1.9e-2559Show/hide
Query:  IQQFDRDMTREYINWYINITRFYITRPGATMGHQ------IHYPQQVLDIFNNNERYMKELHYKYNILIIPPSIHKGCVGVEETEVNEVCHNVKEVPPMT
        IQQFD ++T+EYI+WY NITR YITRPGA + +       ++ PQQVLDI NNNERYM E+H  Y++ I+PP++H+G V VEE E+NEV HNV+E+PP T
Subjt:  IQQFDRDMTREYINWYINITRFYITRPGATMGHQ------IHYPQQVLDIFNNNERYMKELHYKYNILIIPPSIHKGCVGVEETEVNEVCHNVKEVPPMT

KAA0062642.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]4.1e-2555.66Show/hide
Query:  MRALIQQFDRDMTREYINWYINITRFYITRPGATMGHQIHYP--------QQVLDIFNNNERYMKELHYKYNILIIPPSIHKGCVGVEETEVNEVCHNVK
        +R  IQQFD+D+T+EYI+WY NITR YITRPGA +G   +          QQ LDI NNNERYM+E+H  Y++ I+PP +H+GCV VEE E+++V HNV+
Subjt:  MRALIQQFDRDMTREYINWYINITRFYITRPGATMGHQIHYP--------QQVLDIFNNNERYMKELHYKYNILIIPPSIHKGCVGVEETEVNEVCHNVK

Query:  EVPPMT
        EVP  T
Subjt:  EVPPMT

KAA0066693.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]7.8e-2460.42Show/hide
Query:  IQQFDRDMTREYINWYINITRFYITRPGATMGH---------QIHY-PQQVLDIFNNNERYMKELHYKYNILIIPPSIHKGCVGVEETEVNEVCHN
        IQQFD D+T+EYI+WY NITR YITRPGA +GH          + Y PQQVLD+FNNNERYMKE+H  Y++ I+PP +H+G V VEE E++EV HN
Subjt:  IQQFDRDMTREYINWYINITRFYITRPGATMGH---------QIHY-PQQVLDIFNNNERYMKELHYKYNILIIPPSIHKGCVGVEETEVNEVCHN

TYK11193.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]7.1e-2557.69Show/hide
Query:  IQQFDRDMTREYINWYINITRFYITRPGATMGH----------QIHYPQQVLDIFNNNERYMKELHYKYNILIIPPSIHKGCVGVEETEVNEVCHNVKEV
        IQQFD D+T+EYI+WY NITR YITRPGA +GH              PQQVL+I NNN+RYM+E+H  Y++ I+PP +H+G V VEE E++EV HNV+EV
Subjt:  IQQFDRDMTREYINWYINITRFYITRPGATMGH----------QIHYPQQVLDIFNNNERYMKELHYKYNILIIPPSIHKGCVGVEETEVNEVCHNVKEV

Query:  PPMT
        PP T
Subjt:  PPMT

TrEMBL top hitse value%identityAlignment
A0A5A7TBF8 Mediator of RNA polymerase II transcription subunit 12-like isoform X12.9e-2456.73Show/hide
Query:  IQQFDRDMTREYINWYINITRFYITRPGATMGH----------QIHYPQQVLDIFNNNERYMKELHYKYNILIIPPSIHKGCVGVEETEVNEVCHNVKEV
        IQQFD D+T+EYI+WY NITR YITRP A +GH              PQQVL+I NNN+RYM+E+H  Y++ I+PP +H+G V VEE E++EV HNV+EV
Subjt:  IQQFDRDMTREYINWYINITRFYITRPGATMGH----------QIHYPQQVLDIFNNNERYMKELHYKYNILIIPPSIHKGCVGVEETEVNEVCHNVKEV

Query:  PPMT
        PP T
Subjt:  PPMT

A0A5A7V342 Mediator of RNA polymerase II transcription subunit 12-like isoform X12.0e-2555.66Show/hide
Query:  MRALIQQFDRDMTREYINWYINITRFYITRPGATMGHQIHYP--------QQVLDIFNNNERYMKELHYKYNILIIPPSIHKGCVGVEETEVNEVCHNVK
        +R  IQQFD+D+T+EYI+WY NITR YITRPGA +G   +          QQ LDI NNNERYM+E+H  Y++ I+PP +H+GCV VEE E+++V HNV+
Subjt:  MRALIQQFDRDMTREYINWYINITRFYITRPGATMGHQIHYP--------QQVLDIFNNNERYMKELHYKYNILIIPPSIHKGCVGVEETEVNEVCHNVK

Query:  EVPPMT
        EVP  T
Subjt:  EVPPMT

A0A5A7VF64 Mediator of RNA polymerase II transcription subunit 12-like isoform X13.8e-2460.42Show/hide
Query:  IQQFDRDMTREYINWYINITRFYITRPGATMGH---------QIHY-PQQVLDIFNNNERYMKELHYKYNILIIPPSIHKGCVGVEETEVNEVCHN
        IQQFD D+T+EYI+WY NITR YITRPGA +GH          + Y PQQVLD+FNNNERYMKE+H  Y++ I+PP +H+G V VEE E++EV HN
Subjt:  IQQFDRDMTREYINWYINITRFYITRPGATMGH---------QIHY-PQQVLDIFNNNERYMKELHYKYNILIIPPSIHKGCVGVEETEVNEVCHN

A0A5D3CH23 Mediator of RNA polymerase II transcription subunit 12-like isoform X13.4e-2557.69Show/hide
Query:  IQQFDRDMTREYINWYINITRFYITRPGATMGH----------QIHYPQQVLDIFNNNERYMKELHYKYNILIIPPSIHKGCVGVEETEVNEVCHNVKEV
        IQQFD D+T+EYI+WY NITR YITRPGA +GH              PQQVL+I NNN+RYM+E+H  Y++ I+PP +H+G V VEE E++EV HNV+EV
Subjt:  IQQFDRDMTREYINWYINITRFYITRPGATMGH----------QIHYPQQVLDIFNNNERYMKELHYKYNILIIPPSIHKGCVGVEETEVNEVCHNVKEV

Query:  PPMT
        PP T
Subjt:  PPMT

A0A5D3DW79 Mediator of RNA polymerase II transcription subunit 12-like isoform X19.0e-2659Show/hide
Query:  IQQFDRDMTREYINWYINITRFYITRPGATMGHQ------IHYPQQVLDIFNNNERYMKELHYKYNILIIPPSIHKGCVGVEETEVNEVCHNVKEVPPMT
        IQQFD ++T+EYI+WY NITR YITRPGA + +       ++ PQQVLDI NNNERYM E+H  Y++ I+PP++H+G V VEE E+NEV HNV+E+PP T
Subjt:  IQQFDRDMTREYINWYINITRFYITRPGATMGHQ------IHYPQQVLDIFNNNERYMKELHYKYNILIIPPSIHKGCVGVEETEVNEVCHNVKEVPPMT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGCTTTGATTCAGCAGTTCGATAGAGACATGACTCGAGAATACATAAACTGGTATATTAATATTACAAGGTTCTACATCACTCGACCAGGTGCAACTATGGGTCA
TCAGATACATTATCCACAACAGGTTCTTGATATATTCAATAATAATGAGAGGTACATGAAGGAGCTACATTATAAGTATAATATACTTATTATACCTCCATCGATTCATA
AGGGATGTGTTGGAGTGGAAGAAACTGAGGTCAATGAGGTTTGCCATAATGTGAAAGAAGTGCCTCCTATGACA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGCTTTGATTCAGCAGTTCGATAGAGACATGACTCGAGAATACATAAACTGGTATATTAATATTACAAGGTTCTACATCACTCGACCAGGTGCAACTATGGGTCA
TCAGATACATTATCCACAACAGGTTCTTGATATATTCAATAATAATGAGAGGTACATGAAGGAGCTACATTATAAGTATAATATACTTATTATACCTCCATCGATTCATA
AGGGATGTGTTGGAGTGGAAGAAACTGAGGTCAATGAGGTTTGCCATAATGTGAAAGAAGTGCCTCCTATGACA
Protein sequenceShow/hide protein sequence
MRALIQQFDRDMTREYINWYINITRFYITRPGATMGHQIHYPQQVLDIFNNNERYMKELHYKYNILIIPPSIHKGCVGVEETEVNEVCHNVKEVPPMT