CuGenDBv2

Gene ID	CSPI04G20740
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	Chr4:18993609..18994836
RNA-Seq Expression	CSPI04G20740
Synteny	CSPI04G20740
Gene Ontology terms	NA
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAN63585.1 hypothetical protein VITISV_026806 [Vitis vinifera]

1.5e-62

32.94

Show/hide

Query:  AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEERFRYKFD-------INSGAIT-------------------
        +GL +N  K+++  INL    L+R +    C     P  YLG  +GG       W+ + ER   + D          G IT                   
Subjt:  AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEERFRYKFD-------INSGAIT-------------------

Query:  PVGVINRLKQMIRKFVWTGGSTNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYGLEENGWSTKDPNRGKSYRLW
        P  V  ++++M R+F+W+G       H+V WD    P    GLG G    +N+ALL KW  R+ +E ++ W   I++IYG   NGW   +  R      W
Subjt:  PVGVINRLKQMIRKFVWTGGSTNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYGLEENGWSTKDPNRGKSYRLW

Query:  TGI-LKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEKFPNLFSLSLKKDVYVAE-CWFIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-N
          I L  +E   F+ FV+G+G +IRFW D W   +TL  ++P L S+   K+  ++    +    SWN   RRN+ D+EI +  S++  L     +    
Subjt:  TGI-LKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEKFPNLFSLSLKKDVYVAE-CWFIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-N

Query:  DSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKK
        D   W+ + +G FT+KS FL L++ S S  V   + +W +++P KVK F+W +A++ LNTN+ LQ +  +  LSP++C LC K  ET+DHLFLHC  TK 
Subjt:  DSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKK

Query:  TWNTLFSIFDLELCLPSKI
         W+ LF +  ++   P  I
Subjt:  TWNTLFSIFDLELCLPSKI

KAA0065914.1 uncharacterized protein E6C27_scaffold538G00970 [Cucumis melo var. makuwa]

3.7e-64

71.52

Show/hide

Query:  DPNRGKSYRLWTGILKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEKFPNLFSLSLKKDVYVAECWFIVTHSWNLGLRRNMLDNEIANAASVLEILH
        DPNRGKSYRLW+G LKHKE F  SAF + +GTKIRFWKD WC  E L E FPNLFSLSL  D +VA+CW I+THSWNL LRRN+LDN++ N AS+LEILH
Subjt:  DPNRGKSYRLWTGILKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEKFPNLFSLSLKKDVYVAECWFIVTHSWNLGLRRNMLDNEIANAASVLEILH

Query:  SWAPTEGNDSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFL
        SWAP++  DS KWTPN+NG+FTMK+TFL+LTKRSPSIAVPL RHIW+ KIPKK +  L
Subjt:  SWAPTEGNDSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFL

RVW12714.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]

3.4e-62

32.94

Show/hide

Query:  AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEERFRYKFD-------INSGAIT-------------------
        +GL +N  K+++  INL    L+R +    C     P  YLG  +GG       W+ + ER   + D          G IT                   
Subjt:  AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEERFRYKFD-------INSGAIT-------------------

Query:  PVGVINRLKQMIRKFVWTGGSTNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYGLEENGWSTKDPNRGKSYRLW
        P  V  ++++M R+F+W+G       H+V WD    P    GLG G    +N+ALL KW  R+ +E ++ W   I+ IYG   NGW   +  R      W
Subjt:  PVGVINRLKQMIRKFVWTGGSTNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYGLEENGWSTKDPNRGKSYRLW

Query:  TGI-LKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEKFPNLFSLSLKKDVYVAE-CWFIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-N
          I L  +E   F+ FV+G+G +IRFW D W   +TL  ++P L S+   K+  ++    +    SWN   RRN+ D+EI +  S++  L     +    
Subjt:  TGI-LKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEKFPNLFSLSLKKDVYVAE-CWFIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-N

Query:  DSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKK
        D   W+ + +G FT+KS FL L++ S S  V   + +W +++P KVK F+W +A++ LNTN+ LQ +  +  LSP++C LC K  ET+DHLFLHC  TK 
Subjt:  DSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKK

Query:  TWNTLFSIFDLELCLPSKI
         W+ LF +  ++   P  I
Subjt:  TWNTLFSIFDLELCLPSKI

RVW91038.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]

7.4e-65

34.35

Show/hide

Query:  AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEERFRYKFDINSGAITPVGVINRLKQMIRKFVWTGGSTNPIA
        +GL +N  K+++  IN+    L+R +    C     P  YLG  +GG       W+ + ER   + D    AI P  V  ++++M R+F+W+G       
Subjt:  AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEERFRYKFDINSGAITPVGVINRLKQMIRKFVWTGGSTNPIA

Query:  HIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYGLEENGWSTKDPNRGKSYRLWTGI-LKHKEIFNFSAFVLGEGTKIRF
        H+V WD    P    GLG G    +N+ALL KW  R+ +E ++ W   I++IYG   NGW   +  R      W  I L  +E   F+ FV+G+G +IRF
Subjt:  HIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYGLEENGWSTKDPNRGKSYRLWTGI-LKHKEIFNFSAFVLGEGTKIRF

Query:  WKDKWCVAETLTEKFPNLFSLSLKKDVYVAE-CWFIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-NDSLKWTPNINGNFTMKSTFLNLTKRS
        W D W   + L  ++P L S+   K+  ++    +    SWN   RRN+ D+EI +  S++  L     +    D   W+ + +G FT+KS FL L++ S
Subjt:  WKDKWCVAETLTEKFPNLFSLSLKKDVYVAE-CWFIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-NDSLKWTPNINGNFTMKSTFLNLTKRS

Query:  PSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKKTWNTLFSIFDLELCLPSKI
         S  V   + +W +++P KVK F+W +A++ LNTN+ LQ +  +  LSP++C LC K  ET+DHLFLHC  TK  W+ LF +  ++   P  I
Subjt:  PSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKKTWNTLFSIFDLELCLPSKI

RVW98505.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]

1.5e-62

32.94

Show/hide

Query:  AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEERFRYKFD-------INSGAIT-------------------
        +GL +N  K+++  INL    L+R +E   C     P  YLG  +GG       W+ + ER   + D          G IT                   
Subjt:  AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEERFRYKFD-------INSGAIT-------------------

Query:  PVGVINRLKQMIRKFVWTGGSTNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYGLEENGWSTKDPNRGKSYRLW
        P  V  ++++M R+F+W+G       H+V WD    P    GLG G    +N+ALL KW  R+ +E ++ W   I++IYG   NGW   +  R      W
Subjt:  PVGVINRLKQMIRKFVWTGGSTNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYGLEENGWSTKDPNRGKSYRLW

Query:  TGI-LKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEKFPNLFSLSLKKDVYVAECW-FIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-N
          I L  +E   F+ FV+G+G +IRFW D W   + L  ++P L S+   K+  ++    +    SWN   RRN+ D+EI +  S++  L     +    
Subjt:  TGI-LKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEKFPNLFSLSLKKDVYVAECW-FIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-N

Query:  DSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKK
        D   W+ + +G FT+KS FL L++ S S  V   + +W +++P KVK F+W +A++ LNTN+ LQ +  +  LSP++C LC K  ET+DHLFLHC  TK 
Subjt:  DSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKK

Query:  TWNTLFSIFDLELCLPSKI
         W+ LF +  ++   P  I
Subjt:  TWNTLFSIFDLELCLPSKI

TrEMBL top hits

e value

%identity

Alignment

A0A438BP29 Transposon TX1 uncharacterized 149 kDa protein

1.7e-62

32.94

Show/hide

Query:  AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEERFRYKFD-------INSGAIT-------------------
        +GL +N  K+++  INL    L+R +    C     P  YLG  +GG       W+ + ER   + D          G IT                   
Subjt:  AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEERFRYKFD-------INSGAIT-------------------

Query:  PVGVINRLKQMIRKFVWTGGSTNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYGLEENGWSTKDPNRGKSYRLW
        P  V  ++++M R+F+W+G       H+V WD    P    GLG G    +N+ALL KW  R+ +E ++ W   I+ IYG   NGW   +  R      W
Subjt:  PVGVINRLKQMIRKFVWTGGSTNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYGLEENGWSTKDPNRGKSYRLW

Query:  TGI-LKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEKFPNLFSLSLKKDVYVAE-CWFIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-N
          I L  +E   F+ FV+G+G +IRFW D W   +TL  ++P L S+   K+  ++    +    SWN   RRN+ D+EI +  S++  L     +    
Subjt:  TGI-LKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEKFPNLFSLSLKKDVYVAE-CWFIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-N

Query:  DSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKK
        D   W+ + +G FT+KS FL L++ S S  V   + +W +++P KVK F+W +A++ LNTN+ LQ +  +  LSP++C LC K  ET+DHLFLHC  TK 
Subjt:  DSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKK

Query:  TWNTLFSIFDLELCLPSKI
         W+ LF +  ++   P  I
Subjt:  TWNTLFSIFDLELCLPSKI

A0A438I2T6 Transposon TX1 uncharacterized 149 kDa protein

3.6e-65

34.35

Show/hide

Query:  AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEERFRYKFDINSGAITPVGVINRLKQMIRKFVWTGGSTNPIA
        +GL +N  K+++  IN+    L+R +    C     P  YLG  +GG       W+ + ER   + D    AI P  V  ++++M R+F+W+G       
Subjt:  AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEERFRYKFDINSGAITPVGVINRLKQMIRKFVWTGGSTNPIA

Query:  HIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYGLEENGWSTKDPNRGKSYRLWTGI-LKHKEIFNFSAFVLGEGTKIRF
        H+V WD    P    GLG G    +N+ALL KW  R+ +E ++ W   I++IYG   NGW   +  R      W  I L  +E   F+ FV+G+G +IRF
Subjt:  HIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYGLEENGWSTKDPNRGKSYRLWTGI-LKHKEIFNFSAFVLGEGTKIRF

Query:  WKDKWCVAETLTEKFPNLFSLSLKKDVYVAE-CWFIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-NDSLKWTPNINGNFTMKSTFLNLTKRS
        W D W   + L  ++P L S+   K+  ++    +    SWN   RRN+ D+EI +  S++  L     +    D   W+ + +G FT+KS FL L++ S
Subjt:  WKDKWCVAETLTEKFPNLFSLSLKKDVYVAE-CWFIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-NDSLKWTPNINGNFTMKSTFLNLTKRS

Query:  PSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKKTWNTLFSIFDLELCLPSKI
         S  V   + +W +++P KVK F+W +A++ LNTN+ LQ +  +  LSP++C LC K  ET+DHLFLHC  TK  W+ LF +  ++   P  I
Subjt:  PSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKKTWNTLFSIFDLELCLPSKI

A0A438IPG2 Transposon TX1 uncharacterized 149 kDa protein

7.5e-63

32.94

Show/hide

Query:  AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEERFRYKFD-------INSGAIT-------------------
        +GL +N  K+++  INL    L+R +E   C     P  YLG  +GG       W+ + ER   + D          G IT                   
Subjt:  AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEERFRYKFD-------INSGAIT-------------------

Query:  PVGVINRLKQMIRKFVWTGGSTNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYGLEENGWSTKDPNRGKSYRLW
        P  V  ++++M R+F+W+G       H+V WD    P    GLG G    +N+ALL KW  R+ +E ++ W   I++IYG   NGW   +  R      W
Subjt:  PVGVINRLKQMIRKFVWTGGSTNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYGLEENGWSTKDPNRGKSYRLW

Query:  TGI-LKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEKFPNLFSLSLKKDVYVAECW-FIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-N
          I L  +E   F+ FV+G+G +IRFW D W   + L  ++P L S+   K+  ++    +    SWN   RRN+ D+EI +  S++  L     +    
Subjt:  TGI-LKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEKFPNLFSLSLKKDVYVAECW-FIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-N

Query:  DSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKK
        D   W+ + +G FT+KS FL L++ S S  V   + +W +++P KVK F+W +A++ LNTN+ LQ +  +  LSP++C LC K  ET+DHLFLHC  TK 
Subjt:  DSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKK

Query:  TWNTLFSIFDLELCLPSKI
         W+ LF +  ++   P  I
Subjt:  TWNTLFSIFDLELCLPSKI

A0A5A7VF37 Uncharacterized protein

1.8e-64

71.52

Show/hide

Query:  DPNRGKSYRLWTGILKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEKFPNLFSLSLKKDVYVAECWFIVTHSWNLGLRRNMLDNEIANAASVLEILH
        DPNRGKSYRLW+G LKHKE F  SAF + +GTKIRFWKD WC  E L E FPNLFSLSL  D +VA+CW I+THSWNL LRRN+LDN++ N AS+LEILH
Subjt:  DPNRGKSYRLWTGILKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEKFPNLFSLSLKKDVYVAECWFIVTHSWNLGLRRNMLDNEIANAASVLEILH

Query:  SWAPTEGNDSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFL
        SWAP++  DS KWTPN+NG+FTMK+TFL+LTKRSPSIAVPL RHIW+ KIPKK +  L
Subjt:  SWAPTEGNDSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFL

A5BKH7 Reverse transcriptase domain-containing protein

7.5e-63

32.94

Show/hide

Query:  AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEERFRYKFD-------INSGAIT-------------------
        +GL +N  K+++  INL    L+R +    C     P  YLG  +GG       W+ + ER   + D          G IT                   
Subjt:  AGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEERFRYKFD-------INSGAIT-------------------

Query:  PVGVINRLKQMIRKFVWTGGSTNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYGLEENGWSTKDPNRGKSYRLW
        P  V  ++++M R+F+W+G       H+V WD    P    GLG G    +N+ALL KW  R+ +E ++ W   I++IYG   NGW   +  R      W
Subjt:  PVGVINRLKQMIRKFVWTGGSTNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYGLEENGWSTKDPNRGKSYRLW

Query:  TGI-LKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEKFPNLFSLSLKKDVYVAE-CWFIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-N
          I L  +E   F+ FV+G+G +IRFW D W   +TL  ++P L S+   K+  ++    +    SWN   RRN+ D+EI +  S++  L     +    
Subjt:  TGI-LKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEKFPNLFSLSLKKDVYVAE-CWFIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEG-N

Query:  DSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKK
        D   W+ + +G FT+KS FL L++ S S  V   + +W +++P KVK F+W +A++ LNTN+ LQ +  +  LSP++C LC K  ET+DHLFLHC  TK 
Subjt:  DSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKK

Query:  TWNTLFSIFDLELCLPSKI
         W+ LF +  ++   P  I
Subjt:  TWNTLFSIFDLELCLPSKI

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

2.1e-22

25.66

Show/hide

Query:  SGAITPVGVINRLKQMIRKFVWTGGSTNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYGLEENGWSTKDPNRGK
        S  + P  ++NRL Q+ R F+W   +     H+VKW    +P    GLG+ + +  N AL++K   R  +E+ S W   +   Y + E   S     +G 
Subjt:  SGAITPVGVINRLKQMIRKFVWTGGSTNPIAHIVKWDCTSTPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYGLEENGWSTKDPNRGK

Query:  SYRLWTGI-LKHKEIFNFS-AFVLGEGTKIRFWKDKWCVAETLTEKFPNLFSLSLKKDVYVAECWFIVTHSWNLGLRRNMLDN--EIANAASVLEILHSW
            W  I +  +++ +    ++ G+G +IRFW D+W   + L E   +        D  VA+  +I    W+         N   +   A VL+++   
Subjt:  SYRLWTGI-LKHKEIFNFS-AFVLGEGTKIRFWKDKWCVAETLTEKFPNLFSLSLKKDVYVAECWFIVTHSWNLGLRRNMLDN--EIANAASVLEILHSW

Query:  APTEGNDSLKWTPNINGNFTMKSTFLNLTKRS---PSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYKGEETLDHL
          T   D L W  + +G F+++S +  LT      P++A      +WK ++P++VK FLW +  +++ T E+  ++    L + ++C +C  G E++ H+
Subjt:  APTEGNDSLKWTPNINGNFTMKSTFLNLTKRS---PSIAVPLIRHIWKNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYKGEETLDHL

Query:  FLHC
           C
Subjt:  FLHC

Arabidopsis top hits

e value

%identity

Alignment

AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

1.2e-04

Show/hide

Query:  LWTGILKHKEIF-NFSAFVLGEGTKIRFWKDKWCVAETLTEKFPNLFS--LSLKKDVYVAEC-----WFIVTHSWNLGLRRNMLDNEIANAASVLEILHS
        +W  I K + +   F    +G G    FW + W     L     +L      L ++  VA+      W+I     N    RN +   + N   +  +++ 
Subjt:  LWTGILKHKEIF-NFSAFVLGEGTKIRFWKDKWCVAETLTEKFPNLFS--LSLKKDVYVAEC-----WFIVTHSWNLGLRRNMLDNEIANAASVLEILHS

Query:  WAPTEGNDSLKWT---PNINGNFTMKSTFLNLTKRSPSIAVPLIRHIW-KNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYKGEETLD
            E +D   W       +  F+  +T+++L        V   + IW K +IPK   F  W      L T +KL   +   L  PS+C LC   +ET  
Subjt:  WAPTEGNDSLKWT---PNINGNFTMKSTFLNLTKRSPSIAVPLIRHIW-KNKIPKKVKFFLWSLAYRSLNTNEKLQKKVQNTLLSPSMCCLCYKGEETLD

Query:  HLFLHCLF
        HLF  C+F
Subjt:  HLFLHCLF

Sequences

Show/hide sequences

CDS sequence

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ATGGGAGCCGGTCTTTCCCTTAATAGAGCTAAAACCTCCCTGATCGATATTAACCTTAGCAGTGGTGACTTAGCTCGTTTTAGTGAATCTACAAGATGCTCGGTTGATTG
TCTTCCCTATAAATATTTGGGCTTTTCTATTGGAGGGGGTCATAATAGAAAAGAGATGTGGAACACCCTTGAAGAGCGATTCAGATATAAATTCGATATAAACTCCGGTG
CAATCACTCCGGTCGGTGTTATTAATAGATTGAAACAGATGATCAGGAAGTTTGTTTGGACAGGAGGGTCTACGAATCCAATTGCTCACATCGTCAAATGGGATTGCACT
TCCACCCCGATTTGTTATAGTGGTCTTGGGATTGGCTCGTTTAGGCAAAAGAATATTGCTCTTCTCACTAAATGGTTTGGGAGGTTTAGTAAGGAAGAAACCTCATTCTG
GAGGTGGTTCATTGTGGCCATCTATGGCCTAGAGGAGAATGGGTGGTCTACCAAAGATCCAAACAGGGGAAAATCTTACAGATTATGGACTGGTATTTTAAAGCACAAGG
AGATCTTTAATTTTTCTGCTTTTGTTCTGGGAGAAGGAACAAAAATCAGATTTTGGAAGGACAAATGGTGTGTCGCAGAAACACTTACAGAAAAATTTCCTAACTTATTC
TCTTTGTCGCTGAAGAAGGATGTTTATGTGGCCGAATGCTGGTTTATTGTTACTCATTCCTGGAATTTGGGCCTTAGAAGAAATATGCTCGATAACGAGATTGCCAATGC
GGCGTCAGTTTTAGAAATTCTTCATTCTTGGGCCCCCACTGAAGGGAATGATAGTCTTAAATGGACTCCTAACATTAATGGCAACTTCACTATGAAATCTACTTTTCTTA
ACTTAACTAAGAGATCCCCCTCCATTGCTGTTCCTTTGATTCGTCATATTTGGAAGAATAAAATTCCGAAGAAGGTGAAGTTTTTCTTATGGTCGCTTGCTTACAGAAGC
CTTAACACCAATGAGAAGCTACAAAAAAAAGTTCAGAACACATTGCTTAGCCCCTCGATGTGTTGTCTTTGCTATAAAGGTGAGGAAACTCTGGATCATCTATTTCTACA
TTGTCTCTTTACAAAAAAAACTTGGAACACTCTGTTTAGTATTTTTGACTTGGAGCTTTGTCTTCCTAGTAAGATTGATAGCTAA

mRNA sequence

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Protein sequence

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MGAGLSLNRAKTSLIDINLSSGDLARFSESTRCSVDCLPYKYLGFSIGGGHNRKEMWNTLEERFRYKFDINSGAITPVGVINRLKQMIRKFVWTGGSTNPIAHIVKWDCT
STPICYSGLGIGSFRQKNIALLTKWFGRFSKEETSFWRWFIVAIYGLEENGWSTKDPNRGKSYRLWTGILKHKEIFNFSAFVLGEGTKIRFWKDKWCVAETLTEKFPNLF
SLSLKKDVYVAECWFIVTHSWNLGLRRNMLDNEIANAASVLEILHSWAPTEGNDSLKWTPNINGNFTMKSTFLNLTKRSPSIAVPLIRHIWKNKIPKKVKFFLWSLAYRS
LNTNEKLQKKVQNTLLSPSMCCLCYKGEETLDHLFLHCLFTKKTWNTLFSIFDLELCLPSKIDS

CSPI04G20740 (gene) of Cucumber (PI 183967) v1 genome