CuGenDBv2

Gene ID	CSPI04G21300
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	cleavage stimulation factor subunit 77 isoform X2
Genome location	Chr4:19775352..19780559
RNA-Seq Expression	CSPI04G21300
Synteny	CSPI04G21300
Gene Ontology terms	GO:0006397 - mRNA processing (biological process) GO:0005634 - nucleus (cellular component) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008442046.1 PREDICTED: cleavage stimulation factor subunit 77 isoform X1 [Cucumis melo]

1.9e-20

94.92

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Query:  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER
        MASEGSDSKDKTTSNKLLDGLKYNVEVAESVA EAQRLPILEATPLYEQLLTVYPTA +
Subjt:  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER

XP_011653953.1 cleavage stimulation factor subunit 77 [Cucumis sativus]

3.8e-21

96.61

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Query:  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER
        MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTA +
Subjt:  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER

XP_016899569.1 PREDICTED: cleavage stimulation factor subunit 77 isoform X2 [Cucumis melo]

1.9e-20

94.92

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Query:  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER
        MASEGSDSKDKTTSNKLLDGLKYNVEVAESVA EAQRLPILEATPLYEQLLTVYPTA +
Subjt:  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER

XP_022154466.1 cleavage stimulation factor subunit 77 isoform X1 [Momordica charantia]

2.0e-17

83.05

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Query:  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER
        MAS+G++SKDK+ SNKLLD LKYNVEVAE VAN+AQRLPILEATPLYEQLLTVYPTA +
Subjt:  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER

XP_038881157.1 cleavage stimulation factor subunit 77 [Benincasa hispida]

3.2e-20

93.22

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Query:  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER
        M SEGS+SKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTA +
Subjt:  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2S4 Uncharacterized protein

5.0e-35

100

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Query:  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAEREMIREGSGQGLPCSRNEIC
        MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAEREMIREGSGQGLPCSRNEIC
Subjt:  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAEREMIREGSGQGLPCSRNEIC

A0A1S3B5G2 cleavage stimulation factor subunit 77 isoform X1

9.2e-21

94.92

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Query:  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER
        MASEGSDSKDKTTSNKLLDGLKYNVEVAESVA EAQRLPILEATPLYEQLLTVYPTA +
Subjt:  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER

A0A1S4DUB4 cleavage stimulation factor subunit 77 isoform X2

9.2e-21

94.92

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Query:  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER
        MASEGSDSKDKTTSNKLLDGLKYNVEVAESVA EAQRLPILEATPLYEQLLTVYPTA +
Subjt:  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER

A0A6J1DLS0 cleavage stimulation factor subunit 77 isoform X2

9.5e-18

83.05

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Query:  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER
        MAS+G++SKDK+ SNKLLD LKYNVEVAE VAN+AQRLPILEATPLYEQLLTVYPTA +
Subjt:  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER

A0A6J1DNS9 cleavage stimulation factor subunit 77 isoform X1

9.5e-18

83.05

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Query:  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER
        MAS+G++SKDK+ SNKLLD LKYNVEVAE VAN+AQRLPILEATPLYEQLLTVYPTA +
Subjt:  MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER

SwissProt top hits

e value

%identity

Alignment

Q8GUP1 Cleavage stimulation factor subunit 77

8.9e-05

57.89

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Query:  KYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER
        KY VE AE++A  A   PI +ATP+YEQLL++YPT+ R
Subjt:  KYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER

Arabidopsis top hits

e value

%identity

Alignment

AT1G17760.1 Tetratricopeptide repeat (TPR)-like superfamily protein

6.3e-06

57.89

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Query:  KYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER
        KY VE AE++A  A   PI +ATP+YEQLL++YPT+ R
Subjt:  KYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAER

Sequences

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CDS sequence

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ATGGCATCAGAGGGATCTGATTCAAAGGATAAAACAACTAGCAATAAGCTTCTGGATGGTTTGAAGTACAATGTTGAAGTGGCAGAAAGTGTTGCTAATGAGGCGCAGCG
TTTGCCAATATTGGAGGCAACACCATTATATGAGCAACTGCTGACTGTGTATCCCACTGCTGAAAGGGAAATGATTAGAGAAGGATCTGGACAAGGACTGCCATGTAGCA
GGAATGAAATATGCTAA

mRNA sequence

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TGCCGTCACAATCTCACTATTCTTTTCTCCTTCAAAATTCCGATTAAATTCGACGAAAATTTCAATTTGGCGGCCGTAATCATACTCTTCTTCCCACTTCTTAGATTTAT
GAACTAAGCCAGTTTTCATTTTTCTTTTTTTCTTTTCTGAAGCTTCTGTAGCTAAGCAGACCGTTGTAGCTTATACCATCACGGCTGTATTGACTCGCACCCTTTTATGG
CATCAGAGGGATCTGATTCAAAGGATAAAACAACTAGCAATAAGCTTCTGGATGGTTTGAAGTACAATGTTGAAGTGGCAGAAAGTGTTGCTAATGAGGCGCAGCGTTTG
CCAATATTGGAGGCAACACCATTATATGAGCAACTGCTGACTGTGTATCCCACTGCTGAAAGGGAAATGATTAGAGAAGGATCTGGACAAGGACTGCCATGTAGCAGGAA
TGAAATATGCTAA

Protein sequence

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MASEGSDSKDKTTSNKLLDGLKYNVEVAESVANEAQRLPILEATPLYEQLLTVYPTAEREMIREGSGQGLPCSRNEIC

CSPI04G21300 (gene) of Cucumber (PI 183967) v1 genome