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CSPI04G21350 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G21350
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionMediator of RNA polymerase II transcription subunit 11
Genome locationChr4:19845037..19851963
RNA-Seq ExpressionCSPI04G21350
SyntenyCSPI04G21350
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016592 - mediator complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144648.1 mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus]3.9e-5889.39Show/hide
Query:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT
        MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFI              KDIQVTLRDEIKSACEYRPFEKCDYSSRIT
Subjt:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT

Query:  NELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
        NELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
Subjt:  NELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
XP_008442051.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]9.5e-5787.12Show/hide
Query:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT
        MDPPA NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFI              KDIQVTLRDEIKSACEYRPFEKCDYSSRIT
Subjt:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT

Query:  NELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
        NELCCKKLEYM+SKLDGMKQTIDDYQVK+EDS
Subjt:  NELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
XP_022142440.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia]1.5e-5484.09Show/hide
Query:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT
        MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFI              KDIQVTLRDEIKSACEYRPFEKCDYSSRIT
Subjt:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT

Query:  NELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
        NELCCKKLEYM+SKLDGMKQTID+YQVK+ED+
Subjt:  NELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
XP_022927640.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata]1.2e-5484.85Show/hide
Query:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT
        MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFI              KDIQVTLRDEIKSACEYRPFEKCDYSSRIT
Subjt:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT

Query:  NELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
        NELCCKKLEYM+SKLDGMKQTID+YQVK+EDS
Subjt:  NELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
XP_023520392.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo]2.6e-5484.09Show/hide
Query:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT
        MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFI              KDIQVTLRDEIKSACEYRPFEKCDYSSRIT
Subjt:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT

Query:  NELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
        NELCCKKLEYM+SKLDGMKQTID+YQVK+ED+
Subjt:  NELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
TrEMBL top hitse value%identityAlignment
A0A0A0L450 Mediator of RNA polymerase II transcription subunit 111.3e-6794.29Show/hide
Query:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSK--------DIQVTLRDEIKSACEYRPFEK
        MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSK        DIQVTLRDEIKSACEYRPFEK
Subjt:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSK--------DIQVTLRDEIKSACEYRPFEK

Query:  CDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
        CDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
Subjt:  CDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
A0A1S3B5G7 Mediator of RNA polymerase II transcription subunit 114.6e-5787.12Show/hide
Query:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT
        MDPPA NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFI              KDIQVTLRDEIKSACEYRPFEKCDYSSRIT
Subjt:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT

Query:  NELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
        NELCCKKLEYM+SKLDGMKQTIDDYQVK+EDS
Subjt:  NELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
A0A6J1CKY4 Mediator of RNA polymerase II transcription subunit 117.3e-5584.09Show/hide
Query:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT
        MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFI              KDIQVTLRDEIKSACEYRPFEKCDYSSRIT
Subjt:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT

Query:  NELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
        NELCCKKLEYM+SKLDGMKQTID+YQVK+ED+
Subjt:  NELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
A0A6J1EPJ1 Mediator of RNA polymerase II transcription subunit 115.6e-5584.85Show/hide
Query:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT
        MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFI              KDIQVTLRDEIKSACEYRPFEKCDYSSRIT
Subjt:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT

Query:  NELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
        NELCCKKLEYM+SKLDGMKQTID+YQVK+EDS
Subjt:  NELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
A0A6J1I6T5 Mediator of RNA polymerase II transcription subunit 113.1e-5382.58Show/hide
Query:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT
        MDP   NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFI              KDIQVTLRDEIKSACEYRPFEKCDYSSRI 
Subjt:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT

Query:  NELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
        NELCCKKLEYM+ KLDGMKQTID+YQVK+ED+
Subjt:  NELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS
SwissProt top hitse value%identityAlignment
Q6ID77 Mediator of RNA polymerase II transcription subunit 111.2e-4165.6Show/hide
Query:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT
        MDP   NTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +              KDIQVTLR+EIKSACEYRPFEKCDY++RI 
Subjt:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT

Query:  NELCCKKLEYMVSKLDGMKQTIDDY
        NE+C +KLEY++++L+ +KQT D Y
Subjt:  NELCCKKLEYMVSKLDGMKQTIDDY
Arabidopsis top hitse value%identityAlignment
AT3G01435.1 Expressed protein8.3e-4365.6Show/hide
Query:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT
        MDP   NTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +              KDIQVTLR+EIKSACEYRPFEKCDY++RI 
Subjt:  MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRIT

Query:  NELCCKKLEYMVSKLDGMKQTIDDY
        NE+C +KLEY++++L+ +KQT D Y
Subjt:  NELCCKKLEYMVSKLDGMKQTIDDY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCGCCGGCCCATAATACTTCATTGCAGCGCCTCCAAAATGTGGAGAAGAGAATTGTGAGGGTTTTGGAACTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCC
TGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGAATCAGAGGAATCTAACAAAGGAGGAAGAGTGGAGGAGTAAGGATATCC
AAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAATGTGATTATAGTTCAAGGATTACGAACGAACTTTGCTGCAAGAAACTGGAATAT
ATGGTTTCGAAGTTGGATGGAATGAAACAAACTATTGATGATTATCAAGTGAAAATAGAAGATTCTTGA
mRNA sequenceShow/hide mRNA sequence
CACAAAAGCCCATGGGATGCTCGAATCCGAAGCAGCCACCTAGCAAATCCCTATCCCAAGTTGGAGTTCCCAAATCCAACCCTAGCCTGCCCGATTTCCTTCCATTCTTT
TCCTCTATGTAGATCTTCCTACAGTTTCCCAGATTTTTATGAGGATCTATATTGTTCATCGTTAATGCCTTCACAATCTATTGGATGTGGCAGAAACCTTAAACCTGGTT
CTTTGGTGAAGAGATCCTTTGTAATAACGGATGATTTCAGCTTTACCAGCATAGCTCTTGATGGATCCGCCGGCCCATAATACTTCATTGCAGCGCCTCCAAAATGTGGA
GAAGAGAATTGTGAGGGTTTTGGAACTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGC
AATTCATCAAGAATCAGAGGAATCTAACAAAGGAGGAAGAGTGGAGGAGTAAGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTT
GAGAAATGTGATTATAGTTCAAGGATTACGAACGAACTTTGCTGCAAGAAACTGGAATATATGGTTTCGAAGTTGGATGGAATGAAACAAACTATTGATGATTATCAAGT
GAAAATAGAAGATTCTTGA
Protein sequenceShow/hide protein sequence
MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQRNLTKEEEWRSKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEY
MVSKLDGMKQTIDDYQVKIEDS