; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G21470 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G21470
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionBiogenesis of lysosome-related organelles complex 1 subunit 7
Genome locationChr4:19945465..19946939
RNA-Seq ExpressionCSPI04G21470
SyntenyCSPI04G21470
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0031083 - BLOC-1 complex (cellular component)
InterPro domainsIPR017246 - Snapin
IPR028119 - Snapin/Pallidin/Snn1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144641.1 uncharacterized protein LOC101218072 [Cucumis sativus]5.3e-69100Show/hide
Query:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
        MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLP
        FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLP

XP_008444284.1 PREDICTED: uncharacterized protein LOC103487651 [Cucumis melo]3.6e-6595.8Show/hide
Query:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
        MH PEKLDDDYSANEDSNVSAELETSI+  GDLQEGND ENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLP
        FIMQHASRISNVRKRVLSLNSILRTIQRR+DNIDRAITMGNLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLP

XP_038897518.1 uncharacterized protein LOC120085558 isoform X3 [Benincasa hispida]1.2e-6393.06Show/hide
Query:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
        MHSPEKLD DYSANE+SNV +ELETSI+ NGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQ+ LSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPG
        FIMQHASRISNVRKRVLSLNSILRTIQRR+DNIDRAI+MGNLPG
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPG

XP_038897519.1 uncharacterized protein LOC120085558 isoform X4 [Benincasa hispida]5.7e-6393.01Show/hide
Query:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
        MHSPEKLD DYSANE+SNV +ELETSI+ NGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQ+ LSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLP
        FIMQHASRISNVRKRVLSLNSILRTIQRR+DNIDRAI+MGNLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLP

XP_038897522.1 uncharacterized protein LOC120085558 isoform X6 [Benincasa hispida]8.8e-6492.41Show/hide
Query:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
        MHSPEKLD DYSANE+SNV +ELETSI+ NGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQ+ LSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPGD
        FIMQHASRISNVRKRVLSLNSILRTIQRR+DNIDRAI+MGNLPG+
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPGD

TrEMBL top hitse value%identityAlignment
A0A0A0L459 Biogenesis of lysosome-related organelles complex 1 subunit 76.4e-52100Show/hide
Query:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
        MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNV
        FIMQHASRISNV
Subjt:  FIMQHASRISNV

A0A1S3BAU4 Biogenesis of lysosome-related organelles complex 1 subunit 71.7e-6595.8Show/hide
Query:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
        MH PEKLDDDYSANEDSNVSAELETSI+  GDLQEGND ENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
Subjt:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLP
        FIMQHASRISNVRKRVLSLNSILRTIQRR+DNIDRAITMGNLP
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLP

A0A6J1F9C2 Biogenesis of lysosome-related organelles complex 1 subunit 73.5e-5079.33Show/hide
Query:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLT-------TELDQL
        MHSPEK+ DD  ANEDS+VS ELETSI+ NGDL+E ND  N NL NSNALANGLSSMLINIIRDFDSKADDTLKSQ+ LSSSLDR+T       TELDQL
Subjt:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLT-------TELDQL

Query:  LEDAPFPFIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLP
        LE APFPFIMQHASRIS+VRKRVLSLNSIL +IQRR+DNIDRAI+MGN P
Subjt:  LEDAPFPFIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLP

A0A6J1FEP4 Biogenesis of lysosome-related organelles complex 1 subunit 72.9e-5283.22Show/hide
Query:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
        MHSPEK+ DD  ANEDS+VS ELETSI+ NGDL+E ND  N NL NSNALANGLSSMLINIIRDFDSKADDTLKSQ+ LSSSLDR+TTELDQLLE APFP
Subjt:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLP
        FIMQHASRIS+VRKRVLSLNSIL +IQRR+DNIDRAI+MGN P
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLP

A0A6J1IKP2 Biogenesis of lysosome-related organelles complex 1 subunit 77.5e-5383.22Show/hide
Query:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP
        MHSPEK+ DD  ANEDS+ S ELETSI+ NG+L+E ND  N NL NSNALANGLSSMLINIIRDFDSKADDTLKSQ+ LSSSLDR+TTELDQLLEDAPFP
Subjt:  MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFP

Query:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLP
        FIMQHASRIS+VRKRVLSLNSILR+IQRR+DNIDRAI+MGN P
Subjt:  FIMQHASRISNVRKRVLSLNSILRTIQRRMDNIDRAITMGNLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G79070.1 SNARE-associated protein-related1.2e-2652.38Show/hide
Query:  ANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNV
        ++ D   SA+  TS   +   ++G        G   A+A GLS+ML ++I+DFDSKA DTL SQ+ LS SLDRL  ELDQLLE+AP PFI+QHASRIS+V
Subjt:  ANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRISNV

Query:  RKRVLSLNSILRTIQRRMDNIDRAIT
        ++RV SLN +L+++QRR+DNID  ++
Subjt:  RKRVLSLNSILRTIQRRMDNIDRAIT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACAGTCCGGAGAAATTGGATGACGATTATTCTGCCAATGAGGACAGCAACGTCTCAGCTGAATTGGAGACTTCAATTACTCTCAATGGTGATCTCCAGGAAGGAAA
TGATAGTGAAAATAAGAACTTAGGAAATTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATCAACATCATAAGGGATTTTGACTCGAAAGCTGATGATACTCTTA
AAAGCCAGAACCATCTTTCATCTTCCCTTGACCGTCTTACTACAGAACTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATATCT
AATGTAAGAAAGAGAGTTTTGTCACTGAATTCCATCCTAAGAACTATACAACGAAGAATGGATAACATAGATCGGGCAATCACGATGGGCAATCTACCAGGTGATTGA
mRNA sequenceShow/hide mRNA sequence
AAAAAAAAAAACTCTCCCTCCCAGCTCTCTCGCCTCGTCCGGCCACATAGCTGCCGCTGCACCTCCGTCCGACGTTCGCCCAACACCGCAGTCGCACGCTGGTCGTTTTC
CATCTCCGCCGGAGTCGCACATCGGGACAGAATTGAAACAATATTATCCCAGACATCATTATTATCTGAATTGGGCTACAAGCTTACGACGGACCAATTAGTGAATCCTT
CTGGACTCATACCACAAGTTTTGCGAGTCCCTGAACGCAGCAAGTGTGAATTTAGTTGAGATGCACAGTCCGGAGAAATTGGATGACGATTATTCTGCCAATGAGGACAG
CAACGTCTCAGCTGAATTGGAGACTTCAATTACTCTCAATGGTGATCTCCAGGAAGGAAATGATAGTGAAAATAAGAACTTAGGAAATTCTAATGCTCTAGCAAATGGGC
TCTCTTCCATGCTTATCAACATCATAAGGGATTTTGACTCGAAAGCTGATGATACTCTTAAAAGCCAGAACCATCTTTCATCTTCCCTTGACCGTCTTACTACAGAACTG
GATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGGATATCTAATGTAAGAAAGAGAGTTTTGTCACTGAATTCCATCCTAAGAACTATACA
ACGAAGAATGGATAACATAGATCGGGCAATCACGATGGGCAATCTACCAGGTGATTGACTTTGCTCTTCAATAGCCTCAATTTTACTGTCT
Protein sequenceShow/hide protein sequence
MHSPEKLDDDYSANEDSNVSAELETSITLNGDLQEGNDSENKNLGNSNALANGLSSMLINIIRDFDSKADDTLKSQNHLSSSLDRLTTELDQLLEDAPFPFIMQHASRIS
NVRKRVLSLNSILRTIQRRMDNIDRAITMGNLPGD