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CSPI04G21840 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G21840
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationChr4:20334178..20334645
RNA-Seq ExpressionCSPI04G21840
SyntenyCSPI04G21840
Gene Ontology termsGO:0009987 - cellular process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037154.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.8e-3858.06Show/hide
Query:  MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLS
        M GL PWI+ EVEF + VGL +MM  A   E RE++RREANL GYS  K    P    K+N   N    K      M+T+ LR     E+KKEG SKRLS
Subjt:  MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLS

Query:  DVEFQAKREKRLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE
        D EF+AKREK LCFKCDEKYYSGHKCK  E  ELRMFVVRA +V EEI EE+ YE
Subjt:  DVEFQAKREKRLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE

KAA0052896.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-3655.48Show/hide
Query:  MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLS
        MGGL PWIK +VEFCR  GLAEMM  A + ENRE +R EA+L G++  K   YP + +K    NN  + KGNT F MRT+TL+     E KKEG SKRLS
Subjt:  MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLS

Query:  DVEFQAKREKRLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE
        + EFQA++EK LCF+C+EKY   HKCK KE  ELRM+V+++ D + EI EE  YE
Subjt:  DVEFQAKREKRLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE

TYK14463.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-3655.48Show/hide
Query:  MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLS
        MGGL PWIK +VEFCR  GLAEMM  A + ENRE +R EA+L G++  K   YP + +K    NN  + KGNT F MRT+TL+     E KKEG SKRLS
Subjt:  MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLS

Query:  DVEFQAKREKRLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE
        + EFQA++EK LCF+C+EKY   HKCK KE  ELRM+V+++ D + EI EE  YE
Subjt:  DVEFQAKREKRLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE

XP_031737566.1 uncharacterized protein LOC116402457 [Cucumis sativus]2.5e-4071.65Show/hide
Query:  MVENREILRREANLPGYSIAKITNYPHTNAKTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLSDVEFQAKREKRLCFKCDEKYYSGHKCKA
        MVE REI RREANLPGYS  KI+N  +   KT     +Q +K NTVF +RT+TLRG+ A EIKKEGPS+RLSD EFQAKREK LCFKCDEKYYSGHKCKA
Subjt:  MVENREILRREANLPGYSIAKITNYPHTNAKTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLSDVEFQAKREKRLCFKCDEKYYSGHKCKA

Query:  KELHELRMFVVRAGDVEEEIFEEDEYE
        K++ ELRMFVVR  DVEEEI EEDEY+
Subjt:  KELHELRMFVVRAGDVEEEIFEEDEYE

XP_031745972.1 uncharacterized protein LOC116406393 [Cucumis sativus]1.5e-3756.96Show/hide
Query:  MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNA---KTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSK
        M GL PWIK EV FC+ VGLAEMM  A +VENREI+R+EANL GY+  K   YP  N+   +++   N    KGNT+F +RTVTLR A   E+KKEGP+K
Subjt:  MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNA---KTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSK

Query:  RLSDVEFQAKREKRLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE
        RL D EFQA++EK LCF+C+EKY+ GH+CK +E  ELRM+VV+  D E EI EE E++
Subjt:  RLSDVEFQAKREKRLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE

TrEMBL top hitse value%identityAlignment
A0A5A7SZV1 Peroxidase 641.2e-3556.86Show/hide
Query:  MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNA--KTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKR
        M GLLPWI+ EV FCR  GLAEMM+ A +VENREI+R EANL      K  N+PH++   K+   N     KGNT F +RT+TLR + A E+KKE   +R
Subjt:  MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNA--KTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKR

Query:  LSDVEFQAKREKRLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEE
        L D EFQA++EK LCF+C+EKY + HKCK KELHELRMFVV   + E EI EE
Subjt:  LSDVEFQAKREKRLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEE

A0A5A7T0Z9 Ty3-gypsy retrotransposon protein3.3e-3858.06Show/hide
Query:  MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLS
        M GL PWI+ EVEF + VGL +MM  A   E RE++RREANL GYS  K    P    K+N   N    K      M+T+ LR     E+KKEG SKRLS
Subjt:  MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLS

Query:  DVEFQAKREKRLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE
        D EF+AKREK LCFKCDEKYYSGHKCK  E  ELRMFVVRA +V EEI EE+ YE
Subjt:  DVEFQAKREKRLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE

A0A5A7UFA3 Ty3/gypsy retrotransposon protein8.1e-3755.48Show/hide
Query:  MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLS
        MGGL PWIK +VEFCR  GLAEMM  A + ENRE +R EA+L G++  K   YP + +K    NN  + KGNT F MRT+TL+     E KKEG SKRLS
Subjt:  MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLS

Query:  DVEFQAKREKRLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE
        + EFQA++EK LCF+C+EKY   HKCK KE  ELRM+V+++ D + EI EE  YE
Subjt:  DVEFQAKREKRLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE

A0A5A7UMB5 Ty3-gypsy retrotransposon protein1.4e-3657.52Show/hide
Query:  MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLS
        M GLLPW++ EV FCRS GL EMM+ A MVENREI+R EA L GYS  K+T   + N K  + +    SKGNT F +RT+TLR   + E ++EG  KRL 
Subjt:  MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLS

Query:  DVEFQAKREKRLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEEDE
        D EFQA++EK LCF+C+EKY + HKCK KE HELRMFVV  G  E EI EE E
Subjt:  DVEFQAKREKRLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEEDE

A0A5D3CRH2 Ty3/gypsy retrotransposon protein8.1e-3755.48Show/hide
Query:  MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLS
        MGGL PWIK +VEFCR  GLAEMM  A + ENRE +R EA+L G++  K   YP + +K    NN  + KGNT F MRT+TL+     E KKEG SKRLS
Subjt:  MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLS

Query:  DVEFQAKREKRLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE
        + EFQA++EK LCF+C+EKY   HKCK KE  ELRM+V+++ D + EI EE  YE
Subjt:  DVEFQAKREKRLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGGACTGTTACCGTGGATTAAGATAGAAGTAGAATTCTGTCGTTCGGTGGGGTTGGCCGAAATGATGAAATATGCATTGATGGTGGAAAATCGGGAAATTTTGAG
GAGAGAGGCAAACCTTCCGGGGTACTCTATAGCCAAAATCACAAACTACCCCCACACTAATGCCAAAACGAATACGGTTAACAACGACCAAGCGAGTAAGGGAAACACTG
TCTTTTCGATGAGGACGGTCACACTCAGAGGAGCTCTGGCGGCAGAGATTAAGAAAGAAGGGCCATCAAAAAGGTTATCCGACGTGGAGTTTCAGGCAAAAAGAGAAAAG
AGACTCTGTTTCAAGTGTGATGAGAAATATTATTCAGGGCATAAGTGCAAAGCTAAGGAATTACATGAATTGCGAATGTTTGTAGTAAGGGCCGGTGACGTAGAGGAGGA
AATCTTCGAGGAGGACGAGTATGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGGGACTGTTACCGTGGATTAAGATAGAAGTAGAATTCTGTCGTTCGGTGGGGTTGGCCGAAATGATGAAATATGCATTGATGGTGGAAAATCGGGAAATTTTGAG
GAGAGAGGCAAACCTTCCGGGGTACTCTATAGCCAAAATCACAAACTACCCCCACACTAATGCCAAAACGAATACGGTTAACAACGACCAAGCGAGTAAGGGAAACACTG
TCTTTTCGATGAGGACGGTCACACTCAGAGGAGCTCTGGCGGCAGAGATTAAGAAAGAAGGGCCATCAAAAAGGTTATCCGACGTGGAGTTTCAGGCAAAAAGAGAAAAG
AGACTCTGTTTCAAGTGTGATGAGAAATATTATTCAGGGCATAAGTGCAAAGCTAAGGAATTACATGAATTGCGAATGTTTGTAGTAAGGGCCGGTGACGTAGAGGAGGA
AATCTTCGAGGAGGACGAGTATGAATAG
Protein sequenceShow/hide protein sequence
MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLSDVEFQAKREK
RLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE