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CSPI04G22110 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G22110
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionGag/pol protein
Genome locationChr4:20524431..20524637
RNA-Seq ExpressionCSPI04G22110
SyntenyCSPI04G22110
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055448.1 uncharacterized protein E6C27_scaffold221G00180 [Cucumis melo var. makuwa]1.0e-1467.69Show/hide
Query:  GLIPKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
        GL PK LSLSYRLFQGSH P+IEH MRP++ PR FD   VD   E      DLASRIINTLTAES
Subjt:  GLIPKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES

KAA0059883.1 uncharacterized protein E6C27_scaffold108G001750 [Cucumis melo var. makuwa]1.8e-1469.35Show/hide
Query:  PKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
        PK LSLSY+LFQGSHVPDIEH MRP++ PR FD + VD  AE     H LASRIINTL AES
Subjt:  PKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES

KAA0062797.1 uncharacterized protein E6C27_scaffold357G00140 [Cucumis melo var. makuwa]1.6e-1570.97Show/hide
Query:  PKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
        PK LSLSY+LFQGSHVPDIEH MRP+K PR FD + VD  AE     H LASRIINTLT ES
Subjt:  PKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES

KAA0063935.1 uncharacterized protein E6C27_scaffold616G00780 [Cucumis melo var. makuwa]1.4e-1463.08Show/hide
Query:  GLIPKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
        GL PK  SLSYRLFQGSHVPD+EH MRP++ P  FD + ++ + E    P DLASRIINTL+AES
Subjt:  GLIPKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES

KAE8649806.1 hypothetical protein Csa_012150 [Cucumis sativus]1.4e-30100Show/hide
Query:  MPQGLIPKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
        MPQGLIPKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
Subjt:  MPQGLIPKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES

TrEMBL top hitse value%identityAlignment
A0A5A7UK94 Uncharacterized protein5.0e-1567.69Show/hide
Query:  GLIPKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
        GL PK LSLSYRLFQGSH P+IEH MRP++ PR FD   VD   E      DLASRIINTLTAES
Subjt:  GLIPKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES

A0A5A7V746 Uncharacterized protein7.8e-1670.97Show/hide
Query:  PKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
        PK LSLSY+LFQGSHVPDIEH MRP+K PR FD + VD  AE     H LASRIINTLT ES
Subjt:  PKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES

A0A5A7VD06 Uncharacterized protein2.5e-1462.9Show/hide
Query:  PKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
        PK LSLSYRLFQG HVPD+ H  RP++ P TFD E ++++ E+   PHDLA+ IINTLTAES
Subjt:  PKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES

A0A5A7VDH4 Uncharacterized protein6.6e-1563.08Show/hide
Query:  GLIPKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
        GL PK  SLSYRLFQGSHVPD+EH MRP++ P  FD + ++ + E    P DLASRIINTL+AES
Subjt:  GLIPKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES

A0A5D3DMG4 Uncharacterized protein8.6e-1569.35Show/hide
Query:  PKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES
        PK LSLSY+LFQGSHVPDIEH MRP++ PR FD + VD  AE     H LASRIINTL AES
Subjt:  PKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCAGGGCTTGATCCCAAAGATATTATCACTCAGTTATAGACTATTTCAGGGATCACATGTCCCTGATATAGAGCATTCTATGCGGCCTGCCAAGACTCCTAGAAC
TTTTGACTTCGAAGGTGTGGATGTAACTGCGGAAGATATTCATACTCCTCATGATTTGGCATCGCGGATTATTAATACTCTCACTGCTGAATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCCAGGGCTTGATCCCAAAGATATTATCACTCAGTTATAGACTATTTCAGGGATCACATGTCCCTGATATAGAGCATTCTATGCGGCCTGCCAAGACTCCTAGAAC
TTTTGACTTCGAAGGTGTGGATGTAACTGCGGAAGATATTCATACTCCTCATGATTTGGCATCGCGGATTATTAATACTCTCACTGCTGAATCTTGA
Protein sequenceShow/hide protein sequence
MPQGLIPKILSLSYRLFQGSHVPDIEHSMRPAKTPRTFDFEGVDVTAEDIHTPHDLASRIINTLTAES