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CSPI04G22290 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G22290
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description60S ribosomal protein L18a-like protein
Genome locationChr4:20643498..20647675
RNA-Seq ExpressionCSPI04G22290
SyntenyCSPI04G22290
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044804 - AT1G29970-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146004.1 60S ribosomal protein L18a-like protein [Cucumis sativus]9.5e-8599.35Show/hide
Query:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
        MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
Subjt:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG

Query:  FFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        FF AAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
Subjt:  FFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

XP_008452440.1 PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]3.3e-7791.5Show/hide
Query:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
        MS++DKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV F  PTR PG+ DSDDPSQYQHYAHGYQAVPGYAIVEGRPVREP LPCCGIGIGWFLFIIG
Subjt:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG

Query:  FFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        FF AAIPWYAGAILI+CGRVDYREKPGYVACSIAAVIAT+AIIFGATREADVW
Subjt:  FFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

XP_022936871.1 60S ribosomal protein L18a-like protein [Cucurbita moschata]1.5e-6682.35Show/hide
Query:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
        MS++DKSAAVGVVVHHHHE N  HPHYGTFQGVANYPPVGF  PTR PGV D DD SQ +HYAHGYQ V GYA+VEGRPVREPRLPCCGIG GWFLFIIG
Subjt:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG

Query:  FFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        F   A  WY GAILI+CGRV YREKPGYVACSIAAVIATVAIIFGAT+ ADVW
Subjt:  FFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

XP_022976878.1 60S ribosomal protein L18a-like protein [Cucurbita maxima]3.4e-6683.01Show/hide
Query:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
        MS++DKSAAVGVVVHHHHE N  HPHYGTFQGVANYPPVGF  PTR PGV D DD SQ Q+YAHGYQ V GYAIVEGRPVREPRLPCCGIG GWFLFIIG
Subjt:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG

Query:  FFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        F   A  WY GAILI+CGRV YREKPGYVACSIAAVIATVAIIFGAT+ ADVW
Subjt:  FFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

XP_038896754.1 60S ribosomal protein L18a-like protein [Benincasa hispida]5.8e-7489.54Show/hide
Query:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
        MS++DKSAAVGVVVHHHHESNS HP YGTFQGVANYPPVGF  PTR PGV DSDDPSQYQ YAHGYQAVPGY IVEGRPVRE RLPCCGIGIGWFLFIIG
Subjt:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG

Query:  FFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        FF AAIPWYAGAILI+CGRVDYREKPGYVAC IAAV+ATVAIIFGATREAD W
Subjt:  FFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

TrEMBL top hitse value%identityAlignment
A0A0A0L1Y0 Uncharacterized protein4.6e-8599.35Show/hide
Query:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
        MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
Subjt:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG

Query:  FFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        FF AAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
Subjt:  FFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

A0A1S3BUZ1 60S ribosomal protein L18a-like protein1.6e-7791.5Show/hide
Query:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
        MS++DKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV F  PTR PG+ DSDDPSQYQHYAHGYQAVPGYAIVEGRPVREP LPCCGIGIGWFLFIIG
Subjt:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG

Query:  FFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        FF AAIPWYAGAILI+CGRVDYREKPGYVACSIAAVIAT+AIIFGATREADVW
Subjt:  FFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

A0A5D3D9U1 60S ribosomal protein L18a-like protein1.6e-7791.5Show/hide
Query:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
        MS++DKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV F  PTR PG+ DSDDPSQYQHYAHGYQAVPGYAIVEGRPVREP LPCCGIGIGWFLFIIG
Subjt:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG

Query:  FFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        FF AAIPWYAGAILI+CGRVDYREKPGYVACSIAAVIAT+AIIFGATREADVW
Subjt:  FFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

A0A6J1F8P0 60S ribosomal protein L18a-like protein7.4e-6782.35Show/hide
Query:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
        MS++DKSAAVGVVVHHHHE N  HPHYGTFQGVANYPPVGF  PTR PGV D DD SQ +HYAHGYQ V GYA+VEGRPVREPRLPCCGIG GWFLFIIG
Subjt:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG

Query:  FFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        F   A  WY GAILI+CGRV YREKPGYVACSIAAVIATVAIIFGAT+ ADVW
Subjt:  FFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

A0A6J1INF5 60S ribosomal protein L18a-like protein1.7e-6683.01Show/hide
Query:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG
        MS++DKSAAVGVVVHHHHE N  HPHYGTFQGVANYPPVGF  PTR PGV D DD SQ Q+YAHGYQ V GYAIVEGRPVREPRLPCCGIG GWFLFIIG
Subjt:  MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIG

Query:  FFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        F   A  WY GAILI+CGRV YREKPGYVACSIAAVIATVAIIFGAT+ ADVW
Subjt:  FFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

SwissProt top hitse value%identityAlignment
Q8L9S1 60S ribosomal protein L18a-like protein1.6e-2947.48Show/hide
Query:  HYGTFQGVANY----PPVGFSHP----TRLPG--VPDSDDPSQYQHYAHGYQ-AVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYAGAIL
        +YGTFQGVAN+    PP  F  P    T  PG    +        +YA G+   VP Y +VE RP+ E  LPCCG+G+GWFLFI+GF F  IPWY GA +
Subjt:  HYGTFQGVANY----PPVGFSHP----TRLPG--VPDSDDPSQYQHYAHGYQ-AVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYAGAIL

Query:  IICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        ++   VD+REK GYVACSIA+V+  +A++ G T + ++W
Subjt:  IICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

Arabidopsis top hitse value%identityAlignment
AT1G17080.1 Ribosomal protein L18ae family4.3e-4353.75Show/hide
Query:  EQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPP-------VGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGY-AIVEGRPVREPRLPCCGIGIGW
        E+DKS           E  + H  YGTFQGV+NYPP        GF  P+  PGV DS  P    +YAHGYQ VP +  + EGRPVR+ RLPCCGIG+GW
Subjt:  EQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPP-------VGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGY-AIVEGRPVREPRLPCCGIGIGW

Query:  FLFIIGFFFAAIPWYAGAILIICG-RVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        FLFI+GFF  AIPWY G  +++ G R+DYREKPGY+AC+IAA++AT+A+I G ++ AD W
Subjt:  FLFIIGFFFAAIPWYAGAILIICG-RVDYREKPGYVACSIAAVIATVAIIFGATREADVW

AT1G29970.1 60S ribosomal protein L18A-11.1e-3047.48Show/hide
Query:  HYGTFQGVANY----PPVGFSHP----TRLPG--VPDSDDPSQYQHYAHGYQ-AVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYAGAIL
        +YGTFQGVAN+    PP  F  P    T  PG    +        +YA G+   VP Y +VE RP+ E  LPCCG+G+GWFLFI+GF F  IPWY GA +
Subjt:  HYGTFQGVANY----PPVGFSHP----TRLPG--VPDSDDPSQYQHYAHGYQ-AVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYAGAIL

Query:  IICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        ++   VD+REK GYVACSIA+V+  +A++ G T + ++W
Subjt:  IICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

AT1G29970.2 60S ribosomal protein L18A-14.8e-2650.83Show/hide
Query:  HYGTFQGVANY----PPVGFSHP----TRLPG--VPDSDDPSQYQHYAHGYQ-AVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYAGAIL
        +YGTFQGVAN+    PP  F  P    T  PG    +        +YA G+   VP Y +VE RP+ E  LPCCG+G+GWFLFI+GF F  IPWY GA +
Subjt:  HYGTFQGVANY----PPVGFSHP----TRLPG--VPDSDDPSQYQHYAHGYQ-AVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYAGAIL

Query:  IICGRVDYREKPGYVACSIA
        ++   VD+REK GYVACSIA
Subjt:  IICGRVDYREKPGYVACSIA

AT1G29970.3 60S ribosomal protein L18A-11.5e-2436.46Show/hide
Query:  HYGTFQGVANY----PPVGFSHP----TRLPG--VPDSDDPSQYQHYAHGYQ-AVPGYAIVEGRPVREPRLPCCGIGIGWFL------------------
        +YGTFQGVAN+    PP  F  P    T  PG    +        +YA G+   VP Y +VE RP+ E  LPCCG+G+GWFL                  
Subjt:  HYGTFQGVANY----PPVGFSHP----TRLPG--VPDSDDPSQYQHYAHGYQ-AVPGYAIVEGRPVREPRLPCCGIGIGWFL------------------

Query:  ------------------------FIIGFFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
                                FI+GF F  IPWY GA +++   VD+REK GYVACSIA+V+  +A++ G T + ++W
Subjt:  ------------------------FIIGFFFAAIPWYAGAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW

AT1G53560.1 Ribosomal protein L18ae family9.3e-3851.09Show/hide
Query:  YGTFQGVANYPPVGFSHPTR---LPGVPDSDDPSQYQH-------YAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYAGAILII
        YGTFQGV  YPP  + HP     + G+P    P    H       Y   +Q V GY + +GRP R+ RLPCCG+G+GWFLFIIGF   AIPWY G  +++
Subjt:  YGTFQGVANYPPVGFSHPTR---LPGVPDSDDPSQYQH-------YAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYAGAILII

Query:  CGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW
        C R+D REKPGYVAC+IAAV+AT+ I+FG      VW
Subjt:  CGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGAGCAAGACAAATCCGCCGCCGTCGGTGTCGTCGTTCACCACCACCACGAATCCAATTCCCCCCATCCTCACTACGGAACCTTCCAAGGCGTCGCTAATTATCC
TCCCGTCGGATTTTCCCACCCTACTCGCCTCCCTGGTGTCCCCGACTCCGACGATCCTTCTCAATATCAGCACTATGCTCACGGCTATCAAGCTGTACCCGGATATGCTA
TTGTTGAAGGAAGACCAGTGAGAGAGCCGCGCCTTCCTTGCTGTGGCATTGGCATCGGGTGGTTCCTGTTTATTATTGGTTTCTTCTTTGCTGCTATCCCATGGTATGCT
GGAGCAATTCTTATAATATGTGGCAGGGTTGACTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTGTTATTGCCACAGTTGCAATTATTTTCGGTGCGAC
AAGGGAAGCTGATGTCTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATTTCGGGTAGTGAAAAGTTAATATTTTAAGAATAGAATATTAGTTTTAATATGATGATCACTCCATGTTCTCAATTTGATCCATTTCGCCCTCTACGGTTTCGTTTCTA
GAGAGAGAAAATGAGCGAGCAAGACAAATCCGCCGCCGTCGGTGTCGTCGTTCACCACCACCACGAATCCAATTCCCCCCATCCTCACTACGGAACCTTCCAAGGCGTCG
CTAATTATCCTCCCGTCGGATTTTCCCACCCTACTCGCCTCCCTGGTGTCCCCGACTCCGACGATCCTTCTCAATATCAGCACTATGCTCACGGCTATCAAGCTGTACCC
GGATATGCTATTGTTGAAGGAAGACCAGTGAGAGAGCCGCGCCTTCCTTGCTGTGGCATTGGCATCGGGTGGTTCCTGTTTATTATTGGTTTCTTCTTTGCTGCTATCCC
ATGGTATGCTGGAGCAATTCTTATAATATGTGGCAGGGTTGACTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTGTTATTGCCACAGTTGCAATTATTT
TCGGTGCGACAAGGGAAGCTGATGTCTGGTAACCAATCCTAAACTAAAAGTATTGTATATTTGCAAATATGTATGAACGACAGAGCCCATGAGCAAGCTTAGTTCCATTG
AAACCTGAATCTGTGAGAGCCTATCACTACAAGAAATTACACTTTTCTCAATGGTTAACCCATTGGGAAAACTCCAAAAAGCTTCTGGAAAACTCCTCCCGACGCCACAT
TGGCCATTGCCACGATTGTCAGGAAAGATTTCCTCGGGAGAAGCTTAATTTCTTGTGGTGTATAGAGATATTGTTTAGTGGTTGTTTCCATGTTGTGCCCCTAAGAATTA
GCTGTGCCATGCTGCAAAATCATGTTATTTGTTTTAAATCTACGATATGTGTTATGTGACTATTCATCTTCAACTCATGTGTAGAAACGTACTTATCCTTTGGTAAATAT
ATTTATTTCTGCTTGTTCGGAATAAGCATTTGAACATCAAAACAGAAAACTGTTGCACCAATCAGATTTCATGTTCCTCTAGCGAGGTTGCTCAGCCTGATGGATGGTCT
TCAAAGGTGAAGACATTTTCACAC
Protein sequenceShow/hide protein sequence
MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQHYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFFAAIPWYA
GAILIICGRVDYREKPGYVACSIAAVIATVAIIFGATREADVW