CuGenDBv2

Gene ID	CSPI04G22540
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Sm protein F
Genome location	Chr4:20815238..20817391
RNA-Seq Expression	CSPI04G22540
Synteny	CSPI04G22540
Gene Ontology terms	GO:0000387 - spliceosomal snRNP assembly (biological process) GO:0005685 - U1 snRNP (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR001163 - LSM domain, eukaryotic/archaea-type IPR010920 - LSM domain superfamily IPR016487 - Sm-like protein Lsm6/SmF IPR034100 - Small nuclear ribonucleoprotein F

Homology

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GenBank top hits

e value

%identity

Alignment

KAF3452786.1 hypothetical protein FNV43_RR03219 [Rhamnella rubrinervis]

4.8e-41

97.67

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Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
        +IPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTG+LGEILIRCNNVLYLRGVPEDEEIEDAERD
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD

XP_004146017.2 probable small nuclear ribonucleoprotein F isoform X1 [Cucumis sativus]

3.3e-42

100

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Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD

XP_022144158.1 probable small nuclear ribonucleoprotein F [Momordica charantia]

2.8e-41

97.7

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Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIED ER+
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD

XP_022951684.1 probable small nuclear ribonucleoprotein F [Cucurbita moschata]

4.8e-41

97.7

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Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRGVPEDEE+EDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD

XP_022961705.1 probable small nuclear ribonucleoprotein F [Cucurbita moschata]

2.8e-41

98.85

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Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CKH5 Sm protein F

1.6e-42

100

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Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD

A0A5D3DWN8 Sm protein F

1.6e-42

100

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Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD

A0A6J1CSK0 Sm protein F

1.4e-41

97.7

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Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIED ER+
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD

A0A6J1HD26 Sm protein F

1.4e-41

98.85

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Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD

A0A6J1KQT2 Sm protein F

1.4e-41

98.85

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Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD

SwissProt top hits

e value

%identity

Alignment

P62306 Small nuclear ribonucleoprotein F

1.3e-33

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Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE
        MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE

P62307 Small nuclear ribonucleoprotein F

1.3e-33

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Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE
        MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE

P62321 Small nuclear ribonucleoprotein F

1.3e-33

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Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE
        MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE

Q3T0Z8 Small nuclear ribonucleoprotein F

1.3e-33

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Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE
        MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEE

Q9SUM2 Probable small nuclear ribonucleoprotein F

8.6e-41

88.37

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Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
        +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+EDA++D
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD

Arabidopsis top hits

e value

%identity

Alignment

AT2G14285.1 Small nuclear ribonucleoprotein family protein

9.4e-27

86.89

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Query:  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
        MEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+EDA++D
Subjt:  MEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD

AT2G43810.1 Small nuclear ribonucleoprotein family protein

3.1e-14

46.97

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Query:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYL
        P  FL ++ GK VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R NNVLY+
Subjt:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYL

AT2G43810.2 Small nuclear ribonucleoprotein family protein

3.1e-14

46.97

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Query:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYL
        P  FL ++ GK VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R NNVLY+
Subjt:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYL

AT4G30220.1 small nuclear ribonucleoprotein F

6.1e-42

88.37

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Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
        +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+EDA++D
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD

AT4G30220.2 small nuclear ribonucleoprotein F

6.1e-42

88.37

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Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
        +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+EDA++D
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD

Sequences

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CDS sequence

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ATGAGCATACCAGTTAACCCGAAGCCATTTTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGAATGGAGTACAAAGGATTTCTTGTCTCGGTAGA
CTCGTACATGAACTTGCAGCTTGCCAATACTGAGGAATATATCGACGGGCAATTTACTGGGAGTCTTGGAGAAATATTGATCAGGTGTAACAATGTTCTTTATCTTCGAG
GAGTACCAGAGGATGAAGAGATTGAAGATGCCGAGCGTGACTAG

mRNA sequence

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CCGGACAGAAATGAAGAGAAATTAGAATAAAGAAAAGAAAGAAAAAAACCCTAAACCTCTCTCCCTTTCCCTCCCTTGTGTCTTCGACTGTGCATTAGCCGCAGCCCTCT
GATCGTTTCAGTGCAGTCGCCGACCAATCCCTTCCCCATCCTTTTCTTCTTCCTCTGCCGAGTTTCGGCGGTCAACCCACGGCGACCAGGAGTCTTCCCTTGTAACATTT
TCGGAACCATGAGCATACCAGTTAACCCGAAGCCATTTTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGAATGGAGTACAAAGGATTTCTTGTC
TCGGTAGACTCGTACATGAACTTGCAGCTTGCCAATACTGAGGAATATATCGACGGGCAATTTACTGGGAGTCTTGGAGAAATATTGATCAGGTGTAACAATGTTCTTTA
TCTTCGAGGAGTACCAGAGGATGAAGAGATTGAAGATGCCGAGCGTGACTAGCATGTAAATCTTAGCAGCTTTTCATTGTCGCAGTAACAGTGAAGTCAGGAACTTTCTT
CTTTGGTTGATTTCAAACCTGCAACAATGGTAGATTAAGTATTCTTGACTCTCAAAGTAACATCTATGTTTCCGGGTAGCTTGAATTGCTTTAGTTTTCTATACAAGAAA
TAGTTGAGCTTTTATAGTTTGTTCATGTGGAATGCAACGGGTTGGAATATATTTGTGACCTTGTACTGCTTAGATTGGCCAAGTTTCAAAATTTACATGTCACCTTCATC
TAATAGCATGAGTAATGTATTATCTACTTTTGTTTTTCCCATATGTGCC

Protein sequence

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MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD

CSPI04G22540 (gene) of Cucumber (PI 183967) v1 genome