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CSPI04G22580 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G22580
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationChr4:20842632..20843301
RNA-Seq ExpressionCSPI04G22580
SyntenyCSPI04G22580
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0034645 - cellular macromolecule biosynthetic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051536 - iron-sulfur cluster binding (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040609.1 DNA polymerase epsilon catalytic subunit A-like [Cucumis melo var. makuwa]3.3e-6163.16Show/hide
Query:  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNF-----------------
        IPWAELWYNT FHA  +TTP+Q+VYGRPPPPL  +GD K+ NNS EQLL+ERDL+I+ALKENL++ QNRMKKQA+LHRR+L F                 
Subjt:  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNF-----------------

Query:  --QEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE
          ++    +APKFYG Y++VE+IGEVAYRL LPPEA IHNVFHVSQLKLK   +  VQH+ P+LTEEFELQV  E VL +RWN+D+GANE
Subjt:  --QEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE

KAA0062449.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]5.4e-6465.26Show/hide
Query:  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNF-----------------
        IPWAELWYNT FHAS +TTP+Q+VYGRPPPPL  +GD K+ NNS EQLL+ERDL+I+ALKENL++AQNRMKKQA+LHRR+L F                 
Subjt:  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNF-----------------

Query:  --QEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE
          ++   ++APKFYGPY++VE+IGEVAYRL LPPEA IHNVFHVSQLKLK   +  VQH+ P+LTEEFELQV PE VL +RWN+D+GANE
Subjt:  --QEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE

KAA0066550.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]7.0e-6464.74Show/hide
Query:  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNF-----------------
        IPWAELWYNT FHAS +TTP+Q+VYGRPPPPL  +GD K+ NNS EQLL+ERDL+I+ALKENL++AQNRMKKQA+LHR++L F                 
Subjt:  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNF-----------------

Query:  --QEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE
          ++   ++APKFYGPY++VE+IGEVAYRL LPPEA IHNVFHVSQLKLK   +  VQH+ P+LTEEFELQV PE VL +RWN+D+GANE
Subjt:  --QEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE

TYJ98047.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]1.6e-6364.74Show/hide
Query:  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNF-----------------
        IPWAELWYNT FHA  +TTP+Q+VYGRPPPPL  +GD K+ NNS EQLL+ERDL+I+ALKENL++AQNRMKKQA+LHRR+L F                 
Subjt:  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNF-----------------

Query:  --QEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE
          ++   ++APKFYGPY++VE+IGEVAYRL LPPEA IHNVFHVSQLKLK   +  VQH+ P+LTEEFELQV PE VL +RWN+D+GANE
Subjt:  --QEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE

TYK05651.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]3.3e-6163.16Show/hide
Query:  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNF-----------------
        IPWAELWYNT FHA  +TTP+Q+VYGRPPPPL  +GD K+ NNS EQLL+ERDL+I+ALKENL++ QNRMKKQA+LHRR+L F                 
Subjt:  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNF-----------------

Query:  --QEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE
          ++    +APKFYG Y++VE+IGEVAYRL LPPEA IHNVFHVSQLKLK   +  VQH+ P+LTEEFELQV  E VL +RWN+D+GANE
Subjt:  --QEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE

TrEMBL top hitse value%identityAlignment
A0A5A7TH70 DNA polymerase epsilon catalytic subunit1.6e-6163.16Show/hide
Query:  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNF-----------------
        IPWAELWYNT FHA  +TTP+Q+VYGRPPPPL  +GD K+ NNS EQLL+ERDL+I+ALKENL++ QNRMKKQA+LHRR+L F                 
Subjt:  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNF-----------------

Query:  --QEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE
          ++    +APKFYG Y++VE+IGEVAYRL LPPEA IHNVFHVSQLKLK   +  VQH+ P+LTEEFELQV  E VL +RWN+D+GANE
Subjt:  --QEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE

A0A5A7VHA7 Ty3/gypsy retrotransposon protein3.4e-6464.74Show/hide
Query:  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNF-----------------
        IPWAELWYNT FHAS +TTP+Q+VYGRPPPPL  +GD K+ NNS EQLL+ERDL+I+ALKENL++AQNRMKKQA+LHR++L F                 
Subjt:  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNF-----------------

Query:  --QEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE
          ++   ++APKFYGPY++VE+IGEVAYRL LPPEA IHNVFHVSQLKLK   +  VQH+ P+LTEEFELQV PE VL +RWN+D+GANE
Subjt:  --QEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE

A0A5D3BFZ9 Transposon Tf2-6 polyprotein7.6e-6464.74Show/hide
Query:  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNF-----------------
        IPWAELWYNT FHA  +TTP+Q+VYGRPPPPL  +GD K+ NNS EQLL+ERDL+I+ALKENL++AQNRMKKQA+LHRR+L F                 
Subjt:  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNF-----------------

Query:  --QEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE
          ++   ++APKFYGPY++VE+IGEVAYRL LPPEA IHNVFHVSQLKLK   +  VQH+ P+LTEEFELQV PE VL +RWN+D+GANE
Subjt:  --QEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE

A0A5D3C142 Retrotransposable element Tf21.6e-6163.16Show/hide
Query:  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNF-----------------
        IPWAELWYNT FHA  +TTP+Q+VYGRPPPPL  +GD K+ NNS EQLL+ERDL+I+ALKENL++ QNRMKKQA+LHRR+L F                 
Subjt:  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNF-----------------

Query:  --QEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE
          ++    +APKFYG Y++VE+IGEVAYRL LPPEA IHNVFHVSQLKLK   +  VQH+ P+LTEEFELQV  E VL +RWN+D+GANE
Subjt:  --QEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE

A0A5D3DUN8 Transposon Ty3-G Gag-Pol polyprotein2.6e-6465.26Show/hide
Query:  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNF-----------------
        IPWAELWYNT FHAS +TTP+Q+VYGRPPPPL  +GD K+ NNS EQLL+ERDL+I+ALKENL++AQNRMKKQA+LHRR+L F                 
Subjt:  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNF-----------------

Query:  --QEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE
          ++   ++APKFYGPY++VE+IGEVAYRL LPPEA IHNVFHVSQLKLK   +  VQH+ P+LTEEFELQV PE VL +RWN+D+GANE
Subjt:  --QEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.5e-0530.56Show/hide
Query:  YNTNFHASTRTTPYQMVY----GRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANL----------------HRRKLNFQEAL
        YN   H++T+ TP+++V+       P  L SF D KT  NS     QE   +   +KE+L     +MKK  ++                 R K  F    
Subjt:  YNTNFHASTRTTPYQMVY----GRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANL----------------HRRKLNFQEAL

Query:  REVAPKFYGPYKVVEKIGEVAYRLKLPPEAN--IHNVFHVSQLK
         ++AP F GP+ V++K G   Y L LP        + FHVS L+
Subjt:  REVAPKFYGPYKVVEKIGEVAYRLKLPPEAN--IHNVFHVSQLK

P0CT35 Transposon Tf2-2 polyprotein1.5e-0530.56Show/hide
Query:  YNTNFHASTRTTPYQMVY----GRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANL----------------HRRKLNFQEAL
        YN   H++T+ TP+++V+       P  L SF D KT  NS     QE   +   +KE+L     +MKK  ++                 R K  F    
Subjt:  YNTNFHASTRTTPYQMVY----GRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANL----------------HRRKLNFQEAL

Query:  REVAPKFYGPYKVVEKIGEVAYRLKLPPEAN--IHNVFHVSQLK
         ++AP F GP+ V++K G   Y L LP        + FHVS L+
Subjt:  REVAPKFYGPYKVVEKIGEVAYRLKLPPEAN--IHNVFHVSQLK

P0CT36 Transposon Tf2-3 polyprotein1.5e-0530.56Show/hide
Query:  YNTNFHASTRTTPYQMVY----GRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANL----------------HRRKLNFQEAL
        YN   H++T+ TP+++V+       P  L SF D KT  NS     QE   +   +KE+L     +MKK  ++                 R K  F    
Subjt:  YNTNFHASTRTTPYQMVY----GRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANL----------------HRRKLNFQEAL

Query:  REVAPKFYGPYKVVEKIGEVAYRLKLPPEAN--IHNVFHVSQLK
         ++AP F GP+ V++K G   Y L LP        + FHVS L+
Subjt:  REVAPKFYGPYKVVEKIGEVAYRLKLPPEAN--IHNVFHVSQLK

P0CT41 Transposon Tf2-12 polyprotein1.5e-0530.56Show/hide
Query:  YNTNFHASTRTTPYQMVY----GRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANL----------------HRRKLNFQEAL
        YN   H++T+ TP+++V+       P  L SF D KT  NS     QE   +   +KE+L     +MKK  ++                 R K  F    
Subjt:  YNTNFHASTRTTPYQMVY----GRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANL----------------HRRKLNFQEAL

Query:  REVAPKFYGPYKVVEKIGEVAYRLKLPPEAN--IHNVFHVSQLK
         ++AP F GP+ V++K G   Y L LP        + FHVS L+
Subjt:  REVAPKFYGPYKVVEKIGEVAYRLKLPPEAN--IHNVFHVSQLK

Q9UR07 Transposon Tf2-11 polyprotein1.5e-0530.56Show/hide
Query:  YNTNFHASTRTTPYQMVY----GRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANL----------------HRRKLNFQEAL
        YN   H++T+ TP+++V+       P  L SF D KT  NS     QE   +   +KE+L     +MKK  ++                 R K  F    
Subjt:  YNTNFHASTRTTPYQMVY----GRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANL----------------HRRKLNFQEAL

Query:  REVAPKFYGPYKVVEKIGEVAYRLKLPPEAN--IHNVFHVSQLK
         ++AP F GP+ V++K G   Y L LP        + FHVS L+
Subjt:  REVAPKFYGPYKVVEKIGEVAYRLKLPPEAN--IHNVFHVSQLK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAAACGGAGAGAGTTAATAGGTGTTTGGAGCCGTACCGAAGATGTTTCTGTAATGAACCCAGAAAAACTGATGGGCATCCCATGGGCAGAACTATGGTATAACAC
CAATTTCCATGCTTCCACAAGGACAACACCCTACCAAATGGTTTATGGTAGACCACCACCTCCGCTTTTTTCCTTTGGGGATAGAAAGACATTGAATAATAGTGCAGAGC
AGCTCCTCCAAGAGAGGGACTTGATCATTAATGCTTTAAAAGAAAACTTAGTGATTGCCCAAAATAGAATGAAGAAACAGGCAAACTTGCACAGGAGGAAATTAAATTTC
CAGGAAGCATTGCGAGAAGTAGCTCCGAAGTTCTATGGCCCTTATAAAGTCGTGGAAAAGATTGGTGAAGTGGCATACCGGTTGAAATTACCACCAGAGGCGAATATACA
CAATGTTTTTCATGTTTCACAGCTGAAGCTTAAATCGAGACAAACACAGACAGTTCAACACATTGCACCTTCCCTCACAGAAGAGTTTGAGCTCCAAGTCTGTCCGGAAG
GGGTTTTGGTAGTGAGATGGAATAGTGACCTGGGAGCAAACGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCAAACGGAGAGAGTTAATAGGTGTTTGGAGCCGTACCGAAGATGTTTCTGTAATGAACCCAGAAAAACTGATGGGCATCCCATGGGCAGAACTATGGTATAACAC
CAATTTCCATGCTTCCACAAGGACAACACCCTACCAAATGGTTTATGGTAGACCACCACCTCCGCTTTTTTCCTTTGGGGATAGAAAGACATTGAATAATAGTGCAGAGC
AGCTCCTCCAAGAGAGGGACTTGATCATTAATGCTTTAAAAGAAAACTTAGTGATTGCCCAAAATAGAATGAAGAAACAGGCAAACTTGCACAGGAGGAAATTAAATTTC
CAGGAAGCATTGCGAGAAGTAGCTCCGAAGTTCTATGGCCCTTATAAAGTCGTGGAAAAGATTGGTGAAGTGGCATACCGGTTGAAATTACCACCAGAGGCGAATATACA
CAATGTTTTTCATGTTTCACAGCTGAAGCTTAAATCGAGACAAACACAGACAGTTCAACACATTGCACCTTCCCTCACAGAAGAGTTTGAGCTCCAAGTCTGTCCGGAAG
GGGTTTTGGTAGTGAGATGGAATAGTGACCTGGGAGCAAACGAGTGACTGCTGCAGTGGAAGGG
Protein sequenceShow/hide protein sequence
MGKRRELIGVWSRTEDVSVMNPEKLMGIPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNF
QEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE