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CSPI04G22610 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G22610
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase
Genome locationChr4:20876289..20876987
RNA-Seq ExpressionCSPI04G22610
SyntenyCSPI04G22610
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054561.1 uncharacterized protein E6C27_scaffold24G003510 [Cucumis melo var. makuwa]6.8e-0567.5Show/hide
Query:  LQPPPAYLAVNPSGCFEIGNPQAHSTFEAGESQAQSRLHM
        L PP   LA NP+GC E+GNPQAH TFE GES AQSR H+
Subjt:  LQPPPAYLAVNPSGCFEIGNPQAHSTFEAGESQAQSRLHM

KAA0054994.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.0e-0661.67Show/hide
Query:  LQPPPAYLAVNPSGCFEIGNPQAHSTFEAGESQAQS-RLHMLSSFFSVAQHQLNMLSHQI
        +QPP + L  N S C E+GNPQAHSTFE GES AQS ++  LS   SVAQHQL+ML  QI
Subjt:  LQPPPAYLAVNPSGCFEIGNPQAHSTFEAGESQAQS-RLHMLSSFFSVAQHQLNMLSHQI

KAA0063757.1 reverse transcriptase [Cucumis melo var. makuwa]1.5e-0443.37Show/hide
Query:  HCYPDYLATTPIMLQTQDQNSALQPPPAYLAVNPSGCFEIGNPQAHSTFEAGESQAQSRLHMLSSFFSVAQHQLNMLSHQIGQ
        H  P  LA  P ++Q+      +  P A LA NP GC ++ NP  HSTFE GES  +SR H  S+  S+A HQL++L  QI +
Subjt:  HCYPDYLATTPIMLQTQDQNSALQPPPAYLAVNPSGCFEIGNPQAHSTFEAGESQAQSRLHMLSSFFSVAQHQLNMLSHQIGQ

TYK23176.1 uncharacterized protein E5676_scaffold142G002030 [Cucumis melo var. makuwa]3.3e-0761.02Show/hide
Query:  LQPPPAYLAVNPSGCFEIGNPQAHSTFEAGESQAQSRLHMLSSFFSVAQHQLNMLSHQI
        +QPP   LA N S   E+GNPQAHSTFE GES A+SR H+  SF  VAQHQL+ML  Q+
Subjt:  LQPPPAYLAVNPSGCFEIGNPQAHSTFEAGESQAQSRLHMLSSFFSVAQHQLNMLSHQI

TrEMBL top hitse value%identityAlignment
A0A5A7UIK0 Putative mitochondrial protein3.9e-0661.67Show/hide
Query:  LQPPPAYLAVNPSGCFEIGNPQAHSTFEAGESQAQS-RLHMLSSFFSVAQHQLNMLSHQI
        +QPP + L  N S C E+GNPQAHSTFE GES AQS ++  LS   SVAQHQL+ML  QI
Subjt:  LQPPPAYLAVNPSGCFEIGNPQAHSTFEAGESQAQS-RLHMLSSFFSVAQHQLNMLSHQI

A0A5A7UM02 Uncharacterized protein3.3e-0567.5Show/hide
Query:  LQPPPAYLAVNPSGCFEIGNPQAHSTFEAGESQAQSRLHM
        L PP   LA NP+GC E+GNPQAH TFE GES AQSR H+
Subjt:  LQPPPAYLAVNPSGCFEIGNPQAHSTFEAGESQAQSRLHM

A0A5D3C538 Reverse transcriptase7.3e-0543.37Show/hide
Query:  HCYPDYLATTPIMLQTQDQNSALQPPPAYLAVNPSGCFEIGNPQAHSTFEAGESQAQSRLHMLSSFFSVAQHQLNMLSHQIGQ
        H  P  LA  P ++Q+      +  P A LA NP GC ++ NP  HSTFE GES  +SR H  S+  S+A HQL++L  QI +
Subjt:  HCYPDYLATTPIMLQTQDQNSALQPPPAYLAVNPSGCFEIGNPQAHSTFEAGESQAQSRLHMLSSFFSVAQHQLNMLSHQIGQ

A0A5D3DHR5 Uncharacterized protein1.6e-0761.02Show/hide
Query:  LQPPPAYLAVNPSGCFEIGNPQAHSTFEAGESQAQSRLHMLSSFFSVAQHQLNMLSHQI
        +QPP   LA N S   E+GNPQAHSTFE GES A+SR H+  SF  VAQHQL+ML  Q+
Subjt:  LQPPPAYLAVNPSGCFEIGNPQAHSTFEAGESQAQSRLHMLSSFFSVAQHQLNMLSHQI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCTACAACATGCACTGCTATCCAGACTATCTAGCTACGACTCCTATCATGCTGCAAACCCAAGACCAAAATAGTGCTTTGCAACCACCTCCTGCTTATTTAGCTGT
GAACCCTAGTGGTTGTTTCGAGATTGGAAACCCTCAAGCCCACTCGACCTTTGAGGCGGGTGAGTCCCAAGCACAATCAAGACTCCATATGTTGAGTTCATTTTTTAGTG
TCGCTCAACATCAACTGAACATGCTTTCACATCAAATTGGGCAAAAGACAATCAGAAGTCTGAGAATTCCAAGAACTGTTCAAAATCAATACCACCAATAA
mRNA sequenceShow/hide mRNA sequence
CGATCCTAAACTTGATGGAACCCAAGTAGAGAGGATAGTCGTCAACGTCAGTACCACCGTCACTGTCGTTGTAGATGCTCGGTTCATCGCCGCCATGGATGAGTGGTTCT
AGCGTCTTCAGAATCCACCAGTCGGCCTTCCTCTCCAGCCGCAACTGTCTGGCCACTAGATTCCTTCAGTTGCACAGGATCTACACGAGCCTCCAGTCCAGATTCCCTCA
TATGCCTTGTCGTCCCTTCTCCAACCAAAAAGCCCCACACATTGTTGCTCACACATATACATTCCTTGTAATGTGCACGCCATTAAACCCTCACACATCATCGCCCACGC
CTACACATTCCTTGTACGTGCCACATTCTAGGTTTTTCTAGTAGATACATGCGCTACAACATGCACTGCTATCCAGACTATCTAGCTACGACTCCTATCATGCTGCAAAC
CCAAGACCAAAATAGTGCTTTGCAACCACCTCCTGCTTATTTAGCTGTGAACCCTAGTGGTTGTTTCGAGATTGGAAACCCTCAAGCCCACTCGACCTTTGAGGCGGGTG
AGTCCCAAGCACAATCAAGACTCCATATGTTGAGTTCATTTTTTAGTGTCGCTCAACATCAACTGAACATGCTTTCACATCAAATTGGGCAAAAGACAATCAGAAGTCTG
AGAATTCCAAGAACTGTTCAAAATCAATACCACCAATAA
Protein sequenceShow/hide protein sequence
MRYNMHCYPDYLATTPIMLQTQDQNSALQPPPAYLAVNPSGCFEIGNPQAHSTFEAGESQAQSRLHMLSSFFSVAQHQLNMLSHQIGQKTIRSLRIPRTVQNQYHQ