; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G23130 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G23130
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRNA exonuclease 4
Genome locationChr4:21300694..21304068
RNA-Seq ExpressionCSPI04G23130
SyntenyCSPI04G23130
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR013520 - Exonuclease, RNase T/DNA polymerase III
IPR036397 - Ribonuclease H superfamily
IPR037431 - RNA exonuclease 4, DEDDh 3'-5' exonuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649831.1 hypothetical protein Csa_012901 [Cucumis sativus]4.7e-140100Show/hide
Query:  MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVT
        MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVT
Subjt:  MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVT

Query:  LVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRHLA
        LVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRHLA
Subjt:  LVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRHLA

Query:  AEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGG
        AEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGG
Subjt:  AEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGG

XP_004146040.1 RNA exonuclease 4 [Cucumis sativus]3.2e-14199.62Show/hide
Query:  MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVT
        MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVT
Subjt:  MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVT

Query:  LVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRHLA
        LVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRHLA
Subjt:  LVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRHLA

Query:  AEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGCFE
        AEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGG FE
Subjt:  AEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGCFE

XP_008463709.1 PREDICTED: RNA exonuclease 4 [Cucumis melo]1.2e-13595.85Show/hide
Query:  MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHS--NTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
        M SQLKKNPKPKLLNPNWA+LQQKL PHGSNHS  +TV KSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
Subjt:  MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHS--NTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR

Query:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRH
        VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGK+LVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRH
Subjt:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRH

Query:  LAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGCFE
        LAAEFL V+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGG FE
Subjt:  LAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGCFE

XP_038897121.1 RNA exonuclease 4 isoform X2 [Benincasa hispida]4.3e-12590.07Show/hide
Query:  MKSQLKKNPKPKLLNPNWALLQQ-------KLNPHGSNH--SNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQG
        M+SQLKK  KPKLLNPNWALLQQ       KL P GSNH  S+TV KSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTD VAMDCEMVGVGQG
Subjt:  MKSQLKKNPKPKLLNPNWALLQQ-------KLNPHGSNH--SNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQG

Query:  NKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEG
        NKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRP DLKKAKDF TVQKRVAELIKGK+LVGHALRNDLKALLLSHPK DVRDTSEYQFFQKEG
Subjt:  NKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEG

Query:  CKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGCFE
        C+RALRHLAAEFL VEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK E KLKLKQKKRK RKKSKDGG FE
Subjt:  CKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGCFE

XP_038897122.1 RNA exonuclease 4 isoform X3 [Benincasa hispida]3.5e-12792.45Show/hide
Query:  MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNH--SNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
        M+SQLKK  KPKLLNPNWALLQQKL P GSNH  S+TV KSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTD VAMDCEMVGVGQGNKSALGR
Subjt:  MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNH--SNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR

Query:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRH
        VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRP DLKKAKDF TVQKRVAELIKGK+LVGHALRNDLKALLLSHPK DVRDTSEYQFFQKEGC+RALRH
Subjt:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRH

Query:  LAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGCFE
        LAAEFL VEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK E KLKLKQKKRK RKKSKDGG FE
Subjt:  LAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGCFE

TrEMBL top hitse value%identityAlignment
A0A0A0KZK3 RNA exonuclease 41.6e-14199.62Show/hide
Query:  MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVT
        MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVT
Subjt:  MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVT

Query:  LVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRHLA
        LVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRHLA
Subjt:  LVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRHLA

Query:  AEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGCFE
        AEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGG FE
Subjt:  AEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGCFE

A0A1S3CJW0 RNA exonuclease 45.8e-13695.85Show/hide
Query:  MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHS--NTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
        M SQLKKNPKPKLLNPNWA+LQQKL PHGSNHS  +TV KSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
Subjt:  MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHS--NTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR

Query:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRH
        VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGK+LVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRH
Subjt:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRH

Query:  LAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGCFE
        LAAEFL V+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGG FE
Subjt:  LAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGCFE

A0A5A7VEJ2 RNA exonuclease 41.9e-12396.28Show/hide
Query:  KLNPHGSNHS--NTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVV
        KL PHGSNHS  +TV KSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVV
Subjt:  KLNPHGSNHS--NTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVV

Query:  DFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARS
        DFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGK+LVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRHLAAEFL V+IQNGEHCPVEDARS
Subjt:  DFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARS

Query:  AMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGCFE
        AMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGG FE
Subjt:  AMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGCFE

A0A6J1FBB2 RNA exonuclease 41.0e-12488.59Show/hide
Query:  MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVT
        M+SQLKK+ KPKLLNPNWALLQQKLNPHGS  S++V KSEASSKTLLGKRK+RSD ES+HS K +LIPVNDDFSLTD VAMDCEMVGVGQGNKSALGRVT
Subjt:  MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVT

Query:  LVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRHLA
        +VNKWGNVIYDEFVRPIERVVDFRT+ISGIRPCDL+KAKDFPTVQKRVAELIKG++LVGHALRNDLKALLLSHPK DVRDTSEYQFFQ+ GC+RALRHLA
Subjt:  LVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRHLA

Query:  AEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGCFE
        AE L VEIQNGEHCPVEDARSAMLLYQKK KEWEKSVKAE KLKLKQKKRKPRKKSKDGG  E
Subjt:  AEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGCFE

E5GBF8 RNA exonuclease 45.8e-13695.85Show/hide
Query:  MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHS--NTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
        M SQLKKNPKPKLLNPNWA+LQQKL PHGSNHS  +TV KSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR
Subjt:  MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHS--NTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGR

Query:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRH
        VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGK+LVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRH
Subjt:  VTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRH

Query:  LAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGCFE
        LAAEFL V+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGG FE
Subjt:  LAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGCFE

SwissProt top hitse value%identityAlignment
Q08237 RNA exonuclease 44.8e-3940.59Show/hide
Query:  MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVG-QGNKSALGRV
        M  ++ K+ K KL    +     + NP+ +N S T+       + +     E + + SN S++           +   +AMDCE VGVG +G +SAL R+
Subjt:  MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVG-QGNKSALGRV

Query:  TLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQK---EGCKRAL
        ++VN +G+V+ DEFV+P E+VV++RT +SGI+P  +K A  F   QK+ A++++G++LVGHAL++DL+AL+LSHPK+ +RDTS +  F+K   +G   +L
Subjt:  TLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQK---EGCKRAL

Query:  RHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEK
        + L  E L + IQ GEH  VEDAR+ MLLY+K++ E+EK
Subjt:  RHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEK

Q6DEW6 RNA exonuclease 41.0e-4148.63Show/hide
Query:  LTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSH
        LT  VAMDCEMVGVG  G +S L RV++VN +G  +YD++VRP ERV D+RT +SGIRP D+K  + F  VQ  VAE+++G+ LVGHA+ NDLK L L H
Subjt:  LTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSH

Query:  PKNDVRDTSEYQFFQK--EGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRK
        PK  +RDT +Y+ F++  +  + +L+ L  + L+V++Q GEHC V+DA++AM LY  ++K WE ++KA+       K + P+K
Subjt:  PKNDVRDTSEYQFFQK--EGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRK

Q6PAQ4 RNA exonuclease 46.8e-4147.27Show/hide
Query:  LTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSH
        LT  +A+DCEMVGVG +G +S   RV++VN++G  +YD++V+P E V D+RT +SGIRP +LK+ ++F  V+K VAE++KG++LVGHAL NDLK L L H
Subjt:  LTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSH

Query:  PKNDVRDTSEYQFFQK--EGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKS
        PK  +RDT +++ F+   +  + +L+ L+ + L + +Q  EHC ++DA++AM LY   ++EWE S
Subjt:  PKNDVRDTSEYQFFQK--EGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKS

Q91560 RNA exonuclease 41.6e-4248.11Show/hide
Query:  LTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSH
        LT  VAMDCEMVGVG  G +S L RV++VN +G  +YD++V+P ERV D+RT +SGIRP D+KK + F  VQK V+E+++G+ LVGHA+ NDLK L L H
Subjt:  LTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSH

Query:  PKNDVRDTSEYQFFQK--EGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQK--LKLKQKKRKPRK
        PK  +RDT +Y+ F++  +  + +L+ L  + L+V++Q GEHC V+DA++AM LY  ++K WE ++KA+    + + +K + P+K
Subjt:  PKNDVRDTSEYQFFQK--EGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQK--LKLKQKKRKPRK

Q9GZR2 RNA exonuclease 44.0e-4147.67Show/hide
Query:  LTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSH
        LT  +A+DCEMVGVG +G +S   RV++VN++G  +YD++V+P E V D+RT +SGIRP +LK+ ++   VQK VAE++KG++LVGHAL NDLK L L H
Subjt:  LTDEVAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSH

Query:  PKNDVRDTSEYQFF--QKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKL
        PK  +RDT +Y+ F  Q +  + +LR L+ + L +++Q  EHC ++DA++AM LY   +KEWE   +  + L
Subjt:  PKNDVRDTSEYQFF--QKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKL

Arabidopsis top hitse value%identityAlignment
AT2G48100.1 Exonuclease family protein3.4e-1937.57Show/hide
Query:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKG--------KLLVGHALRNDLKAL
        +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK       V++RV   + G         LLVGH LR+D+  L
Subjt:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKG--------KLLVGHALRNDLKAL

Query:  LLSHPKNDVRDTSEYQFFQKEG-CKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE
         L +P + +RDT++Y    K     ++L++L   +L  +IQ G+H   ED  SAM LY++ R +E   S KAE
Subjt:  LLSHPKNDVRDTSEYQFFQKEG-CKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE

AT2G48100.2 Exonuclease family protein3.4e-1937.57Show/hide
Query:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKG--------KLLVGHALRNDLKAL
        +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK       V++RV   + G         LLVGH LR+D+  L
Subjt:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKG--------KLLVGHALRNDLKAL

Query:  LLSHPKNDVRDTSEYQFFQKEG-CKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE
         L +P + +RDT++Y    K     ++L++L   +L  +IQ G+H   ED  SAM LY++ R +E   S KAE
Subjt:  LLSHPKNDVRDTSEYQFFQKEG-CKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE

AT2G48100.3 Exonuclease family protein3.4e-1937.57Show/hide
Query:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKG--------KLLVGHALRNDLKAL
        +A+DCEMVG G  G       V LV+   NVI+   V+P+  V D+R +I+G+   DLK       V++RV   + G         LLVGH LR+D+  L
Subjt:  VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKG--------KLLVGHALRNDLKAL

Query:  LLSHPKNDVRDTSEYQFFQKEG-CKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE
         L +P + +RDT++Y    K     ++L++L   +L  +IQ G+H   ED  SAM LY++ R +E   S KAE
Subjt:  LLSHPKNDVRDTSEYQFFQKEG-CKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKR-KEWEKSVKAE

AT3G15080.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.6e-9166.17Show/hide
Query:  MKSQLKKNPKPKL------LNPNWALLQQKLNPHGSNHSNTVLKSEASS-KTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNK
        M S LK+ PK K+      LNPNW+LLQQKL     +H NT   S   +  ++LGKRKER D E +  + N L PVNDD SLTDEVAMDCEMVGV QG K
Subjt:  MKSQLKKNPKPKL------LNPNWALLQQKLNPHGSNHSNTVLKSEASS-KTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNK

Query:  SALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCK
        SALGRVTLVNKWGNV+YDEFVRP+E VVDFRT ISGIRP DL+KAKDF   Q +VAELIKGK+LVGHAL NDLKALLL+HPK D+RDT EYQ F K   +
Subjt:  SALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCK

Query:  RALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDG
        ++L+HLA+E L  +IQNGEHCP++DAR+AM+LYQK RKEWEK+VK + ++ LKQKKRKP+KK+K G
Subjt:  RALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDG

AT3G27970.1 Exonuclease family protein2.4e-1728.26Show/hide
Query:  GSNHSNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVND----DFSLTDE---VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERV
        G     T+L+S  +S+ +  +R + S V S  + +   + + D    D++ +     VA+ C+MVG G  G+     RV + ++  NVI+  +V+P   V
Subjt:  GSNHSNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVND----DFSLTDE---VAMDCEMVGVG-QGNKSALGRVTLVNKWGNVIYDEFVRPIERV

Query:  VDFRTQISGIRPCDLKKAKDFPTVQKRVAELI--------------KGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEG-CKRALRHLAAEFLS
          +R + +GIRP +L+ A     VQ+++ E +              K ++LVGH L +DL  L L +P + +RDT++Y    K      +L++L   +L 
Subjt:  VDFRTQISGIRPCDLKKAKDFPTVQKRVAELI--------------KGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEG-CKRALRHLAAEFLS

Query:  VEIQNGEHCPVEDARSAMLLYQKKRKEWEK
         ++  G   P ED  + M LY + R +  K
Subjt:  VEIQNGEHCPVEDARSAMLLYQKKRKEWEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCTCAGCTCAAGAAGAACCCTAAACCCAAATTACTCAACCCCAATTGGGCACTACTCCAACAAAAGCTGAACCCCCATGGTTCAAATCATTCGAATACTGTCCT
GAAATCCGAAGCTTCATCGAAGACCCTTTTAGGGAAACGCAAGGAAAGATCTGATGTGGAGTCGAATCATTCCCAAAAGAATATTCTCATTCCGGTGAATGATGACTTTA
GTCTTACAGATGAAGTAGCTATGGATTGTGAAATGGTTGGCGTGGGTCAAGGTAACAAAAGTGCCCTTGGACGAGTTACACTGGTAAACAAATGGGGGAATGTTATATAC
GATGAGTTTGTACGCCCGATAGAGCGTGTGGTTGACTTTCGGACCCAAATTAGTGGCATAAGACCCTGCGACTTGAAGAAAGCTAAGGATTTTCCAACTGTCCAGAAGAG
AGTTGCAGAGTTGATTAAAGGAAAGCTTCTTGTTGGCCATGCCTTGCGTAATGATCTCAAGGCATTACTCTTGAGTCATCCCAAGAATGATGTGAGAGACACCTCCGAGT
ACCAATTCTTTCAGAAGGAAGGATGTAAAAGAGCTCTCCGCCATCTTGCAGCCGAGTTTCTTAGTGTTGAGATCCAAAATGGGGAGCACTGTCCTGTAGAAGATGCTCGT
TCTGCAATGCTGCTCTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTTAAAGCTGAACAAAAGCTTAAATTGAAGCAGAAAAAACGCAAGCCAAGGAAGAAATCCAA
GGATGGAGGATGTTTTGAATGA
mRNA sequenceShow/hide mRNA sequence
GCCCTCCTTCCTTTGCCTTCGTTTCCGGTTTAGGGCCACCGGGAGAGAAGACGACCGAAGCGGCGTCTCGGCCATCAAAGTGGGAGTTTCAACATTATGAAATCTCAGCT
CAAGAAGAACCCTAAACCCAAATTACTCAACCCCAATTGGGCACTACTCCAACAAAAGCTGAACCCCCATGGTTCAAATCATTCGAATACTGTCCTGAAATCCGAAGCTT
CATCGAAGACCCTTTTAGGGAAACGCAAGGAAAGATCTGATGTGGAGTCGAATCATTCCCAAAAGAATATTCTCATTCCGGTGAATGATGACTTTAGTCTTACAGATGAA
GTAGCTATGGATTGTGAAATGGTTGGCGTGGGTCAAGGTAACAAAAGTGCCCTTGGACGAGTTACACTGGTAAACAAATGGGGGAATGTTATATACGATGAGTTTGTACG
CCCGATAGAGCGTGTGGTTGACTTTCGGACCCAAATTAGTGGCATAAGACCCTGCGACTTGAAGAAAGCTAAGGATTTTCCAACTGTCCAGAAGAGAGTTGCAGAGTTGA
TTAAAGGAAAGCTTCTTGTTGGCCATGCCTTGCGTAATGATCTCAAGGCATTACTCTTGAGTCATCCCAAGAATGATGTGAGAGACACCTCCGAGTACCAATTCTTTCAG
AAGGAAGGATGTAAAAGAGCTCTCCGCCATCTTGCAGCCGAGTTTCTTAGTGTTGAGATCCAAAATGGGGAGCACTGTCCTGTAGAAGATGCTCGTTCTGCAATGCTGCT
CTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTTAAAGCTGAACAAAAGCTTAAATTGAAGCAGAAAAAACGCAAGCCAAGGAAGAAATCCAAGGATGGAGGATGTT
TTGAATGATCAATCAGACTCCTAATATCTTAATCCGACTTGGATCTTACAAAAATGTGTAACATGTTGATATAGAACTTAGAATGAGTATTTATTACAGGCATTTGAAGG
CATGAGTTCCATTCTTTATTATGAGTGAAGCTATTGGTCTGTGTTCTTGGCCAAAATTTTGATCTTCAGGCTCGAAAAGAATTACTGGTTATTGATGTTGAAG
Protein sequenceShow/hide protein sequence
MKSQLKKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNHSQKNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIY
DEFVRPIERVVDFRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEYQFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDAR
SAMLLYQKKRKEWEKSVKAEQKLKLKQKKRKPRKKSKDGGCFE