; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G23180 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G23180
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionNucleic acid-binding, OB-fold containing protein
Genome locationChr4:21319859..21322001
RNA-Seq ExpressionCSPI04G23180
SyntenyCSPI04G23180
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146043.1 uncharacterized protein At4g28440 [Cucumis sativus]1.8e-78100Show/hide
Query:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

XP_008463705.1 PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo]2.5e-7798.7Show/hide
Query:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQELQQTNAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ADPEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

XP_022139613.1 uncharacterized protein At4g28440-like [Momordica charantia]1.5e-6989.61Show/hide
Query:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPAS E+QQ+NA  RPGLRKPVFVK+EQLKPGTNGHTL VKVV+SNTVLQKGRSVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TT
Subjt:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
        II+RNAKIDMFKGSMRLAVDKWGRIEL +P +FVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

XP_023535412.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo]2.0e-6688.31Show/hide
Query:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ +PE+FVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

XP_038899654.1 uncharacterized protein At4g28440-like [Benincasa hispida]1.3e-7698.05Show/hide
Query:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQELQQ+NAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIELA+PEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

TrEMBL top hitse value%identityAlignment
A0A0A0L242 Uncharacterized protein8.5e-79100Show/hide
Query:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

A0A1S3CKC4 uncharacterized protein At4g28440-like1.2e-7798.7Show/hide
Query:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQELQQTNAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ADPEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

A0A5D3DWE0 Nucleic acid-binding1.2e-7798.7Show/hide
Query:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPASQELQQTNAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ADPEDFVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

A0A6J1CG19 uncharacterized protein At4g28440-like7.2e-7089.61Show/hide
Query:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MATGKSPTPAS E+QQ+NA  RPGLRKPVFVK+EQLKPGTNGHTL VKVV+SNTVLQKGRSVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TT
Subjt:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
        II+RNAKIDMFKGSMRLAVDKWGRIEL +P +FVVKEDNNLSLVEYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

A0A6J1FBC1 uncharacterized protein At4g28440-like1.3e-6687.66Show/hide
Query:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT
        MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTT
Subjt:  MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTT

Query:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
        IILRNAKIDMFKGSMRLAVDKWGRIE+ +PE+FVVKEDNNLSL+EYELVNVAEE
Subjt:  IILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284405.0e-4467.42Show/hide
Query:  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV
        RKPVFVK+EQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECL+GDETG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL V
Subjt:  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV

Query:  DKWGRIELADPEDFVVKEDNNLSLVEYELVNV
        DKWGRIE      F VKEDNNLSLVEYEL+NV
Subjt:  DKWGRIELADPEDFVVKEDNNLSLVEYELVNV

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein4.7e-4566.92Show/hide
Query:  LRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKW
        LRKPVF K+ +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLVGDETG I+FTARNDQVD +K G+ + LRNAKIDM+KGSMRLAVD+W
Subjt:  LRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKW

Query:  GRIELA-DPEDFVVKEDNNLSLVEYELVNV
        GR+E+A +P D  VK+DNNLSL+EYELV+V
Subjt:  GRIELA-DPEDFVVKEDNNLSLVEYELVNV

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein4.7e-4566.92Show/hide
Query:  LRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKW
        LRKPVF K+ +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLVGDETG I+FTARNDQVD +K G+ + LRNAKIDM+KGSMRLAVD+W
Subjt:  LRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKW

Query:  GRIELA-DPEDFVVKEDNNLSLVEYELVNV
        GR+E+A +P D  VK+DNNLSL+EYELV+V
Subjt:  GRIELA-DPEDFVVKEDNNLSLVEYELVNV

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein4.5e-4865.91Show/hide
Query:  RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDK
        + GL+KP F K++QL+PGT+GH + VK+VS+  VLQKGR+     RQ RI+EC+VGDETG I+FTARNDQVD +K G+T+ LRNAKIDM+KGSMRLAVDK
Subjt:  RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDK

Query:  WGRIELADPEDFVVKEDNNLSLVEYELVNVAE
        WGR+E+ +P  F VKED N+SL+EYELVNV E
Subjt:  WGRIELADPEDFVVKEDNNLSLVEYELVNVAE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein9.7e-5166.03Show/hide
Query:  GKSPTPASQELQQTNAAPRPGL----RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK-GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPG
        G++P P S   + +   P        +KPVFVK++QLKPGT+GHTL VKVV  N+V QK G + S HLR  RI+ECLVGDET  ILFTARNDQV+ +KPG
Subjt:  GKSPTPASQELQQTNAAPRPGL----RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK-GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPG

Query:  TTIILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
         T+ LRNAKIDMFKGSMRLAVDKWGRIE  +P D  VKEDNNLSLVEYELVNV EE
Subjt:  TTIILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

AT4G28440.1 Nucleic acid-binding, OB-fold-like protein3.6e-4567.42Show/hide
Query:  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV
        RKPVFVK+EQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECL+GDETG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL V
Subjt:  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAV

Query:  DKWGRIELADPEDFVVKEDNNLSLVEYELVNV
        DKWGRIE      F VKEDNNLSLVEYEL+NV
Subjt:  DKWGRIELADPEDFVVKEDNNLSLVEYELVNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACAGGGAAATCACCTACGCCGGCATCGCAGGAGCTGCAGCAGACCAATGCAGCGCCTAGACCTGGCCTGAGGAAGCCGGTCTTTGTTAAGATCGAACAGCTCAA
ACCCGGCACCAATGGTCACACACTAATCGTCAAGGTTGTTAGCTCCAATACCGTCTTGCAGAAGGGTCGATCCGTGTCTCAGCACCTTCGCCAGACGCGGATCGCTGAGT
GCCTTGTTGGCGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAAGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATG
TTCAAAGGGTCTATGAGGCTAGCAGTTGACAAATGGGGCCGCATTGAGCTCGCCGATCCTGAAGATTTTGTCGTCAAGGAAGACAATAATCTATCTTTAGTCGAGTATGA
ACTTGTGAATGTTGCAGAGGAATGA
mRNA sequenceShow/hide mRNA sequence
GTACAATGTTTCATCAAAACATATTGGTTTAGAAAAATGTCACAAAAAGAAAAAAAAGGCCAAAGAGGAAGAAAGCACGAAGAATGAAGTGAAGAGATGATCGTATTGCT
ATTGCTATTGCTATATATATAAACACCAATCTCCTAAATTCTCACATTTCACAGCGCCACACACACAGACCTAAATCCGTCGACATAGAAGACAACTTTCGGTCTATTTA
CTCGGATTTTCATTCAGCTTTCGCATCAATGGCGACAGGGAAATCACCTACGCCGGCATCGCAGGAGCTGCAGCAGACCAATGCAGCGCCTAGACCTGGCCTGAGGAAGC
CGGTCTTTGTTAAGATCGAACAGCTCAAACCCGGCACCAATGGTCACACACTAATCGTCAAGGTTGTTAGCTCCAATACCGTCTTGCAGAAGGGTCGATCCGTGTCTCAG
CACCTTCGCCAGACGCGGATCGCTGAGTGCCTTGTTGGCGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAAGTTGATCAAGTAAAACCTGGGACAACTAT
CATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGGTCTATGAGGCTAGCAGTTGACAAATGGGGCCGCATTGAGCTCGCCGATCCTGAAGATTTTGTCGTCAAGGAAG
ACAATAATCTATCTTTAGTCGAGTATGAACTTGTGAATGTTGCAGAGGAATGAGAAGGTACTACTGGAAGGCCAACTTTAAGTATACAACGGTTTGAGATGGCTGATCAG
TGAGTTTCCTGGTAATCTGCAGATGTGAATATATAACAACGCTATATTATAATTTTGTGTGGGTGAAGTATTTAAGCGAACAATCCCTTGATTTCTTCTAAAGCTCTATT
CCGTCGGTATGACTTACACAAAGCCATGTTTTGTTGGGTAAAGGTATAAATAGGTACTAGTTTGGTACTTTTTACAACTCTGGAAATGTAATAGAGCGTTAGCGACGGCA
AAGAATGCTTTTGGTATGCCTTTGATATCATATCTAACATGCAAAGTTTTCAATTTGTTGGGTTTGTATATTGTATATTCTCTGGCAATTCATATTACATGCAGGTTGTG
GACAATAACTTGTCCTAGAAGGTGGCTTTACTTTGAGGGCAATAGCAAAAGTCTTTTGGACCAATGTAGACGGTAAACTGTCTCAACTTGTACGAGC
Protein sequenceShow/hide protein sequence
MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDM
FKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE