; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G23520 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G23520
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptiontranslation initiation factor IF-1, chloroplastic-like
Genome locationChr4:21596258..21597044
RNA-Seq ExpressionCSPI04G23520
SyntenyCSPI04G23520
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR004368 - Translation initiation factor IF-1
IPR006196 - RNA-binding domain, S1, IF1 type
IPR012340 - Nucleic acid-binding, OB-fold
IPR022967 - RNA-binding domain, S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064332.1 translation initiation factor IF-1 [Cucumis melo var. makuwa]1.2e-6593.71Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
        MSSTNLLQFPLLQSHFRPPSTLLFP VKSHLS+ SISFPTSQFLHTPSHA P FALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRST-KDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR+RS+ KDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRST-KDSSS

KAG6607876.1 Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]9.2e-5883.1Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
        MSSTNLLQFPLLQ   RPPST LFPA+KSHLS+ SI FP+SQFLH PSH S +F  MAKSPK+++SEQK SHEGSV+ESLPNGMFRV+LDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RSTKD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDSSS

XP_011654076.1 uncharacterized protein LOC101206284 [Cucumis sativus]3.6e-7099.3Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
        MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAF LMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDSSS

XP_022940969.1 translation initiation factor IF-1, chloroplastic-like [Cucurbita moschata]1.0e-5681.69Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
        MSSTNLLQFPLLQ   RPPST LFPA+KSH+S+ SI FP+SQFLH PSH   +F  MAKSPK+++SEQK SHEGSV+ESLPNGMFRV+LDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RSTKD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDSSS

XP_038899010.1 translation initiation factor IF-1, chloroplastic [Benincasa hispida]2.1e-6290.21Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
        MSST LLQFPLLQSHFRPPSTL FPAVKSHLS+ SI+FPT+QFLH PSHAS  F LMAKSPKNDTSEQK SHEGSVVESLPNGMFRVRLDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR-STKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR+R STKDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMR-STKDSSS

TrEMBL top hitse value%identityAlignment
A0A0A0L4Q7 S1-like domain-containing protein1.8e-7099.3Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
        MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAF LMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDSSS

A0A5A7V7J3 Translation initiation factor IF-15.8e-6693.71Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
        MSSTNLLQFPLLQSHFRPPSTLLFP VKSHLS+ SISFPTSQFLHTPSHA P FALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRST-KDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR+RS+ KDSSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRST-KDSSS

A0A6J1FLU6 translation initiation factor IF-1, chloroplastic-like4.9e-5781.69Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
        MSSTNLLQFPLLQ   RPPST LFPA+KSH+S+ SI FP+SQFLH PSH   +F  MAKSPK+++SEQK SHEGSV+ESLPNGMFRV+LDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RSTKD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDSSS

A0A6J1IP00 uncharacterized protein LOC1114769472.3e-5481.02Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
        MSSTNLL+FPLL  H RPPSTL FPA+KSHLS+ SI+FPTSQFL  PSH    FALMAK PK+D++EQK S+EGS+VESLPNGMFRVRLDN+DLILGYI 
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRST
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RS+
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRST

A0A6J1IW62 translation initiation factor IF-1, chloroplastic-like3.2e-5681.69Show/hide
Query:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS
        MSSTNLLQFPLLQ   RPP T LFP  KSHLS+ SI FP+SQFLH PSH   +FA MAKSPK+++SEQK SHEGSV+ESLPNGMFRV+LDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDSSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RSTKD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDSSS

SwissProt top hitse value%identityAlignment
A0A370 Translation initiation factor IF-1, chloroplastic1.4e-2777.03Show/hide
Query:  EQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDS
        EQK +HEG + ESLPNGMFRVRLDN+DLILGY+SGKIR++F+RILPGDRV++EVSRYDST+GRI+YR+R+ KDS
Subjt:  EQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDS

A6MMF7 Translation initiation factor IF-1, chloroplastic1.4e-2776Show/hide
Query:  EQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDSS
        EQKL HEG + ESLPNGMFRVRLDN+DLILGY+SG+IR++F+RILPGDRV++EVSRYDST+GRI+YR+R+ KDS+
Subjt:  EQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDSS

A6MMP2 Translation initiation factor IF-1, chloroplastic2.7e-2877.33Show/hide
Query:  EQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDSS
        EQKL HEG ++ESLPNGMFRVRLDN+DLILGY+SG+IR++F+RILPGDRV++EVSRYDSTKGRI+YR+R+ KDS+
Subjt:  EQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDSS

Q94KR7 Translation initiation factor IF-1, chloroplastic1.4e-2965.05Show/hide
Query:  TSQFLHTPS--HASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRST
        T  FL  P    A+PA +  + +  + + EQK  HEG ++ESLPNGMFRVRLDN+DLILGYISGKIRKN+VRILPGDRV+VEV+RYDS+KGRIVYR+RS+
Subjt:  TSQFLHTPS--HASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRST

Query:  KDS
          S
Subjt:  KDS

Q95GN5 Translation initiation factor IF-1, chloroplastic6.1e-2876Show/hide
Query:  EQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDSS
        EQKL HEG ++ESLPNGMFRVRLDN+DLILGY+SG+IR++F+RILPGDRV++EVSRYDST+GRI+YR+R+ KDS+
Subjt:  EQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRMRSTKDSS

Arabidopsis top hitse value%identityAlignment
AT4G11175.1 Nucleic acid-binding, OB-fold-like protein1.5e-2147.24Show/hide
Query:  LLQSHFRPPSTLLFPAVKSHLSLASISF-PTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVR
        LL   FR  + +L P +    S + ++  P  +          A       P+      K   EG V ESLPNGMFRV L+N D ILGYI GKIRKNF+R
Subjt:  LLQSHFRPPSTLLFPAVKSHLSLASISF-PTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVR

Query:  ILPGDRVRVEVSRYDSTKGRIVYRMRS
        ILPGD+V+VE+S YDSTKGRI++RM S
Subjt:  ILPGDRVRVEVSRYDSTKGRIVYRMRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGCACAAATCTCCTACAGTTCCCTCTCCTTCAATCCCACTTCCGCCCACCGTCCACTCTCCTTTTTCCCGCCGTCAAATCCCATCTCTCCCTCGCCTCAATCTC
CTTTCCCACCTCCCAATTCCTTCATACCCCTTCTCATGCTTCTCCTGCCTTCGCTCTCATGGCCAAGTCCCCCAAAAACGACACCTCCGAGCAGAAATTGAGCCATGAAG
GCTCCGTCGTCGAGTCTCTTCCCAATGGGATGTTCAGGGTTCGGTTGGATAATCAAGACCTCATTCTAGGCTACATATCCGGTAAGATTCGGAAGAATTTTGTTCGTATT
TTGCCTGGTGATAGGGTTAGGGTTGAGGTTAGTCGTTATGATTCTACCAAAGGTCGAATTGTTTATAGAATGCGTAGTACTAAAGATTCATCTTCATGA
mRNA sequenceShow/hide mRNA sequence
GAAAAAAAAGCGTAGGCCTATCCCCTTCTCCATCGTAGTTTCTTTGGCGCTCCCTCAGTCAGCCAAAATCTTTGAAGACTGAATTTGGAGCAAAAATGTCGAGCACAAAT
CTCCTACAGTTCCCTCTCCTTCAATCCCACTTCCGCCCACCGTCCACTCTCCTTTTTCCCGCCGTCAAATCCCATCTCTCCCTCGCCTCAATCTCCTTTCCCACCTCCCA
ATTCCTTCATACCCCTTCTCATGCTTCTCCTGCCTTCGCTCTCATGGCCAAGTCCCCCAAAAACGACACCTCCGAGCAGAAATTGAGCCATGAAGGCTCCGTCGTCGAGT
CTCTTCCCAATGGGATGTTCAGGGTTCGGTTGGATAATCAAGACCTCATTCTAGGCTACATATCCGGTAAGATTCGGAAGAATTTTGTTCGTATTTTGCCTGGTGATAGG
GTTAGGGTTGAGGTTAGTCGTTATGATTCTACCAAAGGTCGAATTGTTTATAGAATGCGTAGTACTAAAGATTCATCTTCATGAATACTAGTTTTGGATTATCATTATTA
TTATTATTTGCCTTTAATGTGTTGATTTTGTGACATATTGTGTACATTGATCCCTCTTTTTTTGGCCTTTTTTAGAATGTAAAATGACAAACATTTAGTTTATTTGAGCT
CCTTTGTTTTAGTGATTTGTATTTGTGGATGAATCACTTGGAGTATTAGAGCTTGTGAATTTTTGTCTTGTCTTGTAATTGTTTTATACTAAAGAAAGAGGAGTTTCTAA
ATGATATTGATTTTTCA
Protein sequenceShow/hide protein sequence
MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRI
LPGDRVRVEVSRYDSTKGRIVYRMRSTKDSSS