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CSPI04G23540 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G23540
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRING-type domain-containing protein
Genome locationChr4:21600584..21601063
RNA-Seq ExpressionCSPI04G23540
SyntenyCSPI04G23540
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064334.1 RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa]1.5e-8094.34Show/hide
Query:  MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGS
        MGDPLLTLLFPMETMVPES SPPVLHYTVTLD+RTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRR+GGG EDVEAAMAEERR+KRAEKLPLPPTV+FGS
Subjt:  MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGS

Query:  EKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA
        EKMVRRRSEEECAICLEEFL GENCQALPEC+HFFHSECI+VWFSKKFTCPICRNCVAA
Subjt:  EKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA

XP_008453063.1 PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo]1.5e-8094.34Show/hide
Query:  MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGS
        MGDPLLTLLFPMETMVPES SPPVLHYTVTLD+RTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRR+GGG EDVEAAMAEERR+KRAEKLPLPPTV+FGS
Subjt:  MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGS

Query:  EKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA
        EKMVRRRSEEECAICLEEFL GENCQALPEC+HFFHSECI+VWFSKKFTCPICRNCVAA
Subjt:  EKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA

XP_022936829.1 RING-H2 finger protein ATL39-like [Cucurbita moschata]4.3e-6480Show/hide
Query:  MGDPLLTLLFPMETMVPESPSPP-VLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFG
        M DPLLTLLFPMETMV ES SPP V+HYTVTLD+RTS+IFS +IILFFLFL+HVLSGFLQWFL  RR G    DVEA M EERR++RAEK  +P  VRFG
Subjt:  MGDPLLTLLFPMETMVPESPSPP-VLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFG

Query:  SEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA
        SE+MVRRRSEEECAICLEEF+ GENCQALPECNHFFHS+CIDVWFSKKFTCPICR+C+AA
Subjt:  SEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA

XP_022976597.1 RING-H2 finger protein ATL39-like [Cucurbita maxima]1.5e-6480.62Show/hide
Query:  MGDPLLTLLFPMETMVPESPSPPVL-HYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFG
        M DPLLTLLFPMETMV ES SPPV+ HYTVTLD+RTSIIFS +IILFFLFL+HVLSGFLQWFL  RR G    DVEA M EERR++RAEK  +P  VRFG
Subjt:  MGDPLLTLLFPMETMVPESPSPPVL-HYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFG

Query:  SEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA
        SE+MVRRRSEEECAICLEEF+ GENCQALPECNHFFHS+CIDVWFSKKFTCPICR+C+AA
Subjt:  SEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA

XP_031740449.1 RING-H2 finger protein ATL39-like [Cucumis sativus]2.6e-85100Show/hide
Query:  MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGS
        MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGS
Subjt:  MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGS

Query:  EKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA
        EKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA
Subjt:  EKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA

TrEMBL top hitse value%identityAlignment
A0A0A0L062 RING-type domain-containing protein1.3e-85100Show/hide
Query:  MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGS
        MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGS
Subjt:  MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGS

Query:  EKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA
        EKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA
Subjt:  EKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA

A0A1S3BVC7 RING-H2 finger protein ATL39-like7.2e-8194.34Show/hide
Query:  MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGS
        MGDPLLTLLFPMETMVPES SPPVLHYTVTLD+RTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRR+GGG EDVEAAMAEERR+KRAEKLPLPPTV+FGS
Subjt:  MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGS

Query:  EKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA
        EKMVRRRSEEECAICLEEFL GENCQALPEC+HFFHSECI+VWFSKKFTCPICRNCVAA
Subjt:  EKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA

A0A5A7VAT0 RING-H2 finger protein ATL39-like7.2e-8194.34Show/hide
Query:  MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGS
        MGDPLLTLLFPMETMVPES SPPVLHYTVTLD+RTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRR+GGG EDVEAAMAEERR+KRAEKLPLPPTV+FGS
Subjt:  MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGS

Query:  EKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA
        EKMVRRRSEEECAICLEEFL GENCQALPEC+HFFHSECI+VWFSKKFTCPICRNCVAA
Subjt:  EKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA

A0A5D3D9M0 RING-H2 finger protein ATL39-like7.2e-8194.34Show/hide
Query:  MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGS
        MGDPLLTLLFPMETMVPES SPPVLHYTVTLD+RTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRR+GGG EDVEAAMAEERR+KRAEKLPLPPTV+FGS
Subjt:  MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGS

Query:  EKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA
        EKMVRRRSEEECAICLEEFL GENCQALPEC+HFFHSECI+VWFSKKFTCPICRNCVAA
Subjt:  EKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA

A0A6J1IG67 RING-H2 finger protein ATL39-like7.2e-6580.62Show/hide
Query:  MGDPLLTLLFPMETMVPESPSPPVL-HYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFG
        M DPLLTLLFPMETMV ES SPPV+ HYTVTLD+RTSIIFS +IILFFLFL+HVLSGFLQWFL  RR G    DVEA M EERR++RAEK  +P  VRFG
Subjt:  MGDPLLTLLFPMETMVPESPSPPVL-HYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFG

Query:  SEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA
        SE+MVRRRSEEECAICLEEF+ GENCQALPECNHFFHS+CIDVWFSKKFTCPICR+C+AA
Subjt:  SEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA

SwissProt top hitse value%identityAlignment
O64763 E3 ubiquitin-protein ligase ATL95.8e-1140.23Show/hide
Query:  DVEAAMAEERRLKR----AEKLPLPPTVRFGSEKMVR-RRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICR
        D E+ +   RRL      AE +   PT  +   K VR  +   ECA+CL EF   E  + +P C H FH++C+DVW S+  TCP+CR
Subjt:  DVEAAMAEERRLKR----AEKLPLPPTVRFGSEKMVR-RRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICR

P0C034 RING-H2 finger protein ATL101.1e-1233.33Show/hide
Query:  VEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRS------------------EEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRN
        +  A+    R   +E +P   + R  S K +++++                  +EEC ICL +F+ GE  + LP+CNH FH  CID W  +  TCP CRN
Subjt:  VEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRS------------------EEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRN

Query:  CV
        C+
Subjt:  CV

P0C035 RING-H2 finger protein ATL601.2e-1151.02Show/hide
Query:  ECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA
        ECA+CL + + G+  + LP CNH FH +CID+WF    TCP+CRN V +
Subjt:  ECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA

Q9LS99 RING-H2 finger protein ATL778.9e-1254.17Show/hide
Query:  EECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV
        EEC ICL +F+ GE  + LP+CNH FH  CID W ++  TCP CR+C+
Subjt:  EECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV

Q9XF63 RING-H2 finger protein ATL33.1e-1259.57Show/hide
Query:  ECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV
        EC+ICL E + G+  + LP+CNH FH ECID+WF    TCPICRN V
Subjt:  ECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV

Arabidopsis top hitse value%identityAlignment
AT1G49220.1 RING/U-box superfamily protein7.5e-1433.33Show/hide
Query:  VEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRS------------------EEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRN
        +  A+    R   +E +P   + R  S K +++++                  +EEC ICL +F+ GE  + LP+CNH FH  CID W  +  TCP CRN
Subjt:  VEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRS------------------EEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRN

Query:  CV
        C+
Subjt:  CV

AT1G53820.1 RING/U-box superfamily protein8.3e-1351.02Show/hide
Query:  ECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA
        ECA+CL + + G+  + LP CNH FH +CID+WF    TCP+CRN V +
Subjt:  ECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA

AT1G72310.1 RING/U-box superfamily protein2.2e-1359.57Show/hide
Query:  ECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV
        EC+ICL E + G+  + LP+CNH FH ECID+WF    TCPICRN V
Subjt:  ECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV

AT2G35000.1 RING/U-box superfamily protein4.1e-1240.23Show/hide
Query:  DVEAAMAEERRLKR----AEKLPLPPTVRFGSEKMVR-RRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICR
        D E+ +   RRL      AE +   PT  +   K VR  +   ECA+CL EF   E  + +P C H FH++C+DVW S+  TCP+CR
Subjt:  DVEAAMAEERRLKR----AEKLPLPPTVRFGSEKMVR-RRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICR

AT3G18773.1 RING/U-box superfamily protein6.3e-1354.17Show/hide
Query:  EECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV
        EEC ICL +F+ GE  + LP+CNH FH  CID W ++  TCP CR+C+
Subjt:  EECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGATCCATTACTCACACTTCTATTCCCCATGGAAACCATGGTCCCTGAATCTCCATCTCCTCCAGTCCTCCACTACACCGTAACGCTAGACATTCGAACCTCCAT
TATCTTCTCCTTCTCCATAATCCTCTTCTTCCTCTTCCTCTTCCACGTCCTCAGCGGCTTCCTCCAGTGGTTCCTCGACGTCCGGCGAAACGGAGGAGGCGGTGAGGACG
TGGAGGCGGCAATGGCGGAGGAGCGGAGGTTGAAGCGGGCGGAGAAGTTGCCGTTGCCACCGACTGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGTGAGGAG
GAATGCGCGATATGTTTGGAGGAGTTTTTGATCGGAGAAAATTGTCAGGCGTTGCCGGAGTGTAATCATTTTTTTCATTCGGAGTGTATTGATGTTTGGTTTAGCAAGAA
ATTTACGTGCCCCATCTGCCGTAATTGTGTTGCAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGATCCATTACTCACACTTCTATTCCCCATGGAAACCATGGTCCCTGAATCTCCATCTCCTCCAGTCCTCCACTACACCGTAACGCTAGACATTCGAACCTCCAT
TATCTTCTCCTTCTCCATAATCCTCTTCTTCCTCTTCCTCTTCCACGTCCTCAGCGGCTTCCTCCAGTGGTTCCTCGACGTCCGGCGAAACGGAGGAGGCGGTGAGGACG
TGGAGGCGGCAATGGCGGAGGAGCGGAGGTTGAAGCGGGCGGAGAAGTTGCCGTTGCCACCGACTGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGTGAGGAG
GAATGCGCGATATGTTTGGAGGAGTTTTTGATCGGAGAAAATTGTCAGGCGTTGCCGGAGTGTAATCATTTTTTTCATTCGGAGTGTATTGATGTTTGGTTTAGCAAGAA
ATTTACGTGCCCCATCTGCCGTAATTGTGTTGCAGCTTAG
Protein sequenceShow/hide protein sequence
MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEE
ECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA