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CSPI04G24020 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G24020
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptioncalcium-binding protein CML39-like
Genome locationChr4:21942722..21943672
RNA-Seq ExpressionCSPI04G24020
SyntenyCSPI04G24020
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064378.1 putative calcium-binding protein CML10 [Cucumis melo var. makuwa]6.6e-3996.59Show/hide
Query:  KSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV
        KSNS  VSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALC+ADRNRDGKLGEEEIDQFVKYMMSKGYVV
Subjt:  KSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV

KAG6608479.1 hypothetical protein SDJN03_01821, partial [Cucurbita argyrosperma subsp. sororia]1.5e-3076.14Show/hide
Query:  KSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV
        KS +    SES YSAKELR+IFNQMDTNEDGGLGLFEIK ALK+LDAE PVHLA+ ALC +DRNRDGKLG +EID+F+KY+MS+GYVV
Subjt:  KSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV

KAG7024250.1 hypothetical protein SDJN02_13064, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-3275.79Show/hide
Query:  SMFRPKTKSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV
        S FRPK       ++S+SAYS KEL++IF+QMDTNEDGGLGLFEIKNALK+LDAE P+HLAY ALCHADRN DGKLGEEEID+FVKYM+S+GYVV
Subjt:  SMFRPKTKSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV

KAG7037807.1 hypothetical protein SDJN02_01438, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-3076.14Show/hide
Query:  KSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV
        KS +    SES YSAKELR+IFNQMDTNEDGGLGLFEIK ALK+LDAE PVHLA+ ALC +DRNRDGKLG +EID+F+KY+MS+GYVV
Subjt:  KSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV

KGN55187.1 hypothetical protein Csa_012728 [Cucumis sativus]1.1e-46100Show/hide
Query:  MSSMFRPKTKSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV
        MSSMFRPKTKSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV
Subjt:  MSSMFRPKTKSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV

TrEMBL top hitse value%identityAlignment
A0A0A0L3J7 Uncharacterized protein5.4e-47100Show/hide
Query:  MSSMFRPKTKSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV
        MSSMFRPKTKSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV
Subjt:  MSSMFRPKTKSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV

A0A5D3D9N2 Putative calcium-binding protein CML103.2e-3996.59Show/hide
Query:  KSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV
        KSNS  VSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALC+ADRNRDGKLGEEEIDQFVKYMMSKGYVV
Subjt:  KSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV

A0A6A1UYX3 Putative calcium-binding protein CML101.5e-0943.42Show/hide
Query:  YSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV
        Y+ ++LR +F + DTN DG L   E++NA + L +  P   A+ AL HADRN DG++ E E+D  V Y +  GY V
Subjt:  YSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV

A0A6J1AEM7 probable calcium-binding protein CML157.7e-0942.53Show/hide
Query:  PVSSE-----SAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYV
        PVSS+        S  ++R IFN+ D N+DG L   E+K+A   L + MP   A+ AL HAD N DG + E E D+ VKY + +GY+
Subjt:  PVSSE-----SAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYV

W9S022 Putative calcium-binding protein CML104.5e-0940Show/hide
Query:  KTKSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV
        K+  N  P    + Y  ++L+ +  + DT+ DG L   E+K A K+L A  P   A  ALCHAD+NRDG + EEE+   V Y   +GYV+
Subjt:  KTKSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G50770.1 calmodulin-like 419.6e-0427.16Show/hide
Query:  SSMFRPKTKSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEE
        S++  P++ S+          S +ELRQ+F+  D++ DG +  FE+++    +   +    A  A+   D + DG LG E+
Subjt:  SSMFRPKTKSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCGATGTTCCGTCCAAAAACGAAATCGAATTCACCGCCCGTCTCGTCGGAAAGCGCCTACTCTGCCAAAGAACTGAGACAGATCTTTAACCAAATGGATACGAA
TGAAGACGGAGGATTAGGATTGTTCGAGATCAAGAACGCATTGAAGAAACTGGACGCTGAAATGCCAGTTCATCTCGCTTACAGTGCTCTGTGTCACGCAGATCGAAACA
GAGATGGAAAGCTTGGCGAGGAAGAGATCGATCAGTTCGTAAAGTACATGATGAGCAAAGGTTATGTTGTCTGA
mRNA sequenceShow/hide mRNA sequence
AATTCTTTTAAATCATATACTTAAATAATCACCGTCTTACTCTAGACGTCAAAATCCGATGACATTTCATCAACATACTAACGTGTTTTTGAATGTTTAAACTTCAAACT
AAAAACAGAGTCAGCCGTTGAAATCCATCACAAAGCACAGTTCCTAAATTGTACGACACTCTAAAGCCGAATTGGATTCCAATTTTGTAGCCGCACCAATCCCAATACAG
AACACAAAGATAACTCCGCATCTCAATTCTCTAATCACCGCCATTAATTTCCATTTTTCTCTATAAATTCCCCTATTCCCCCACTTTCCATTTTCAACAACAAATCAAAT
CAAATCCAACTCCCCAATTTCCCAAACCACAATCAACTACAGAACCATGTCGTCGATGTTCCGTCCAAAAACGAAATCGAATTCACCGCCCGTCTCGTCGGAAAGCGCCT
ACTCTGCCAAAGAACTGAGACAGATCTTTAACCAAATGGATACGAATGAAGACGGAGGATTAGGATTGTTCGAGATCAAGAACGCATTGAAGAAACTGGACGCTGAAATG
CCAGTTCATCTCGCTTACAGTGCTCTGTGTCACGCAGATCGAAACAGAGATGGAAAGCTTGGCGAGGAAGAGATCGATCAGTTCGTAAAGTACATGATGAGCAAAGGTTA
TGTTGTCTGATTTTTATTTACTGCCCCGCCGCCTCCCACGACGGCTTGTTGATCATATCGTCGGTTTCTATAAACTTGTCCAATAAATGGCGGCTGCTTCTTATGTGTAT
TTTTCTTTTATTTTACTTTCGAACCTCTGTTGCCTTTAATTTATTGACAATATATATCTCAATCAGTTGTATTTTAATTGTATATATCTTCATAAATTTAAGTTCGTATG
TGTTGTTATGTTTAGCTAATTACTCATTTTGTGTTCATCACACTTTCAAAAATTGATAGCACCATGGCAAG
Protein sequenceShow/hide protein sequence
MSSMFRPKTKSNSPPVSSESAYSAKELRQIFNQMDTNEDGGLGLFEIKNALKKLDAEMPVHLAYSALCHADRNRDGKLGEEEIDQFVKYMMSKGYVV