; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G24100 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G24100
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionprotein DCL, chloroplastic
Genome locationChr4:21997421..21999999
RNA-Seq ExpressionCSPI04G24100
SyntenyCSPI04G24100
Gene Ontology termsGO:0009658 - chloroplast organization (biological process)
GO:1901259 - chloroplast rRNA processing (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR044673 - Protein DCL-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064386.1 protein DCL [Cucumis melo var. makuwa]8.7e-11994.22Show/hide
Query:  MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEEEVE
        MAMASIL   PFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEG RIRSHQEYSSDLLRKPV P AKDLAGPSEDD SSEESGN++EEEV+
Subjt:  MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEEEVE

Query:  WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI
        WVDWEDKILEDTVPLVGFVRMVLHTGKYE+GDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGE+VDFSYWKCIKGLI
Subjt:  WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI

Query:  RKNYPLYAESFILRHFRRRRRNSRR
        RKNYPLYAESFILRHFRRRRRN RR
Subjt:  RKNYPLYAESFILRHFRRRRRNSRR

XP_004141259.1 protein DCL homolog, chloroplastic [Cucumis sativus]1.1e-12699.11Show/hide
Query:  MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEEEVE
        MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIR+RSHQEYSSDLLRKPVGPSAKDLAGPSEDD SSEESGNEDEEEVE
Subjt:  MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEEEVE

Query:  WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI
        WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI
Subjt:  WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI

Query:  RKNYPLYAESFILRHFRRRRRNSRR
        RKNYPLYAESFILRHFRRRRRNSRR
Subjt:  RKNYPLYAESFILRHFRRRRRNSRR

XP_008452556.1 PREDICTED: protein DCL, chloroplastic [Cucumis melo]8.7e-11994.22Show/hide
Query:  MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEEEVE
        MAMASIL   PFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEG RIRSHQEYSSDLLRKPV P AKDLAGPSEDD SSEESGN++EEEV+
Subjt:  MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEEEVE

Query:  WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI
        WVDWEDKILEDTVPLVGFVRMVLHTGKYE+GDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGE+VDFSYWKCIKGLI
Subjt:  WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI

Query:  RKNYPLYAESFILRHFRRRRRNSRR
        RKNYPLYAESFILRHFRRRRRN RR
Subjt:  RKNYPLYAESFILRHFRRRRRNSRR

XP_022133006.1 protein DCL homolog, chloroplastic [Momordica charantia]1.1e-10583.93Show/hide
Query:  MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEEEVE
        MAMAS+ KPPPFPPFHSLNP+F NSSP+ILCFP HP+ S HPS RALKTGPEG RIRSH+EYSSDLLRKPV P AKD A  SEDD  SEESG + EEE +
Subjt:  MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEEEVE

Query:  WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI
        WVDWEDKILEDTVPLVGFVRMVLH+GKY +GDRL  EHEKTIL+RLLPYHPE EKKIGCG+DYIT+GYHPDFESSRCLFIVRKDGE+VDFSYWKCIKGLI
Subjt:  WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI

Query:  RKNYPLYAESFILRHFRRRRRNSR
        RKNYPL+AESFILRHFRRRRRN R
Subjt:  RKNYPLYAESFILRHFRRRRRNSR

XP_038897137.1 protein DCL homolog, chloroplastic [Benincasa hispida]1.3e-10987.11Show/hide
Query:  MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEEEVE
        MAMASILKPPPF P HSLNPNFFNSSP+ILCFPT P+ SFH STRALKTGPEG RIRSH+EYSSDLLRKPV P A+DLA  SEDD SSEESGN+DEEE +
Subjt:  MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEEEVE

Query:  WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI
        WVDWEDKILEDTVPLVGFVRMVLH+GKY +GDRL PEHEKTIL+RLLPYHPESEKKIGCG+DYIT+GYHPDFESSRCLFIVRKDGE+VDFSYWKCIKGLI
Subjt:  WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI

Query:  RKNYPLYAESFILRHFRRRRRNSRR
        RK YPL+AESFILRHFRRRRRN RR
Subjt:  RKNYPLYAESFILRHFRRRRRNSRR

TrEMBL top hitse value%identityAlignment
A0A0A0L2D0 Uncharacterized protein5.5e-12799.11Show/hide
Query:  MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEEEVE
        MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIR+RSHQEYSSDLLRKPVGPSAKDLAGPSEDD SSEESGNEDEEEVE
Subjt:  MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEEEVE

Query:  WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI
        WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI
Subjt:  WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI

Query:  RKNYPLYAESFILRHFRRRRRNSRR
        RKNYPLYAESFILRHFRRRRRNSRR
Subjt:  RKNYPLYAESFILRHFRRRRRNSRR

A0A1S3BVA4 protein DCL, chloroplastic4.2e-11994.22Show/hide
Query:  MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEEEVE
        MAMASIL   PFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEG RIRSHQEYSSDLLRKPV P AKDLAGPSEDD SSEESGN++EEEV+
Subjt:  MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEEEVE

Query:  WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI
        WVDWEDKILEDTVPLVGFVRMVLHTGKYE+GDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGE+VDFSYWKCIKGLI
Subjt:  WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI

Query:  RKNYPLYAESFILRHFRRRRRNSRR
        RKNYPLYAESFILRHFRRRRRN RR
Subjt:  RKNYPLYAESFILRHFRRRRRNSRR

A0A5A7VDC9 Protein DCL4.2e-11994.22Show/hide
Query:  MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEEEVE
        MAMASIL   PFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEG RIRSHQEYSSDLLRKPV P AKDLAGPSEDD SSEESGN++EEEV+
Subjt:  MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEEEVE

Query:  WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI
        WVDWEDKILEDTVPLVGFVRMVLHTGKYE+GDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGE+VDFSYWKCIKGLI
Subjt:  WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI

Query:  RKNYPLYAESFILRHFRRRRRNSRR
        RKNYPLYAESFILRHFRRRRRN RR
Subjt:  RKNYPLYAESFILRHFRRRRRNSRR

A0A6J1BTU2 protein DCL homolog, chloroplastic5.3e-10683.93Show/hide
Query:  MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEEEVE
        MAMAS+ KPPPFPPFHSLNP+F NSSP+ILCFP HP+ S HPS RALKTGPEG RIRSH+EYSSDLLRKPV P AKD A  SEDD  SEESG + EEE +
Subjt:  MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEEEVE

Query:  WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI
        WVDWEDKILEDTVPLVGFVRMVLH+GKY +GDRL  EHEKTIL+RLLPYHPE EKKIGCG+DYIT+GYHPDFESSRCLFIVRKDGE+VDFSYWKCIKGLI
Subjt:  WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI

Query:  RKNYPLYAESFILRHFRRRRRNSR
        RKNYPL+AESFILRHFRRRRRN R
Subjt:  RKNYPLYAESFILRHFRRRRRNSR

A0A6J1FFU9 protein DCL homolog, chloroplastic-like1.6e-10281.53Show/hide
Query:  MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEEEVE
        +AMASILKPPP  P HSLNPN  N+SP+I+CF THP+ SFHPS RALKTGPEG RIRSH+EYSSDLLRKPV P A DLA PSED  SSEESGN DEEE E
Subjt:  MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEEEVE

Query:  WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI
        WVDWED+ILE+TVPLVGFVRMVLH+GKYE+GDRL PEHEKTIL+RLL YHPE EKKIGCG+DYIT+GYHP+FE SRCLFIVRKDGE+VDFSYWKC++GLI
Subjt:  WVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLI

Query:  RKNYPLYAESFILRHFRRRRRN
        RKNYPL+AESFILRHF+RRRR+
Subjt:  RKNYPLYAESFILRHFRRRRRN

SwissProt top hitse value%identityAlignment
P85936 Protein DCL, chloroplastic (Fragment)7.4e-0481.82Show/hide
Query:  WVDWEDKILEDTVPLVGFVRMV
        WVDWED+IL+DTVPLV FVRM+
Subjt:  WVDWEDKILEDTVPLVGFVRMV

Q42463 Protein DCL, chloroplastic1.5e-6569.44Show/hide
Query:  ALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSED---DGSSEESGNEDEEEVEWVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTI
        A+KTG EG  IRS    +++LLRKPV  +  +    SE+   + S +E G +  +   WVDWED+ILEDTVPLVGFVRM+LH+GKY  GDRL P+H++TI
Subjt:  ALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSED---DGSSEESGNEDEEEVEWVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTI

Query:  LERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLIRKNYPLYAESFILRHFRRRRRN
        L+RLLPYHPE +KKIG GVDYITVGYHPDFE+SRCLFIVRKDGE VDFSYWKCIKGLIRKNYPLYA+SFILRHFR+RRRN
Subjt:  LERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLIRKNYPLYAESFILRHFRRRRRN

Q5D869 DNA-directed RNA polymerase V subunit 13.9e-2138.84Show/hide
Query:  EDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLIRKNY
        E ++L D  P++  +R ++H   Y +GD +  + +  +LE++L +HP+ E K+G GVD+ITV  H  F  SRC F+V  DG   DFSY K +   + K Y
Subjt:  EDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLIRKNY

Query:  PLYAESFILRHFRRRRRNSRR
        P  AE FI ++F + R +  R
Subjt:  PLYAESFILRHFRRRRRNSRR

Q8L557 Protein EMBRYO DEFECTIVE 5141.9e-0431.01Show/hide
Query:  GPSAKDLAGPSEDDGSSEESGNEDEEEVEWVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPD
        G S K   G  E  G  +    E    V   D+  K L        F    L   KYE+           +L+ +   H E EKKIG G+    V  HP 
Subjt:  GPSAKDLAGPSEDDGSSEESGNEDEEEVEWVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPD

Query:  FESSRCLFIVRKDGEMVDFSYWKCIKGLI
        ++ SRC F+VR+D    DFS+ KC+  ++
Subjt:  FESSRCLFIVRKDGEMVDFSYWKCIKGLI

Q9C642 Protein DCL homolog, chloroplastic2.9e-6960.89Show/hide
Query:  MAMASILKPPPF--PPFHSLNPNF-FNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEE
        M++ASI    P   P F      F F+SSPL L FP     S  P  RAL+T  +G +I + + Y S+LLR+P            E     EE   E+ E
Subjt:  MAMASILKPPPF--PPFHSLNPNF-FNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEE

Query:  EVEWVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIK
          E+VDWEDKILE TVPLVGFVRM+LH+GKY N DRL PEHE+TI+E LLPYHPE EKKIGCG+DYI VG+HPDFESSRC+FIVRKDGE+VDFSYWKCIK
Subjt:  EVEWVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIK

Query:  GLIRKNYPLYAESFILRHFRRRRRN
        GLI+K YPLYA+SFILRHFR+RR+N
Subjt:  GLIRKNYPLYAESFILRHFRRRRRN

Arabidopsis top hitse value%identityAlignment
AT1G45230.1 Protein of unknown function (DUF3223)2.1e-7060.89Show/hide
Query:  MAMASILKPPPF--PPFHSLNPNF-FNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEE
        M++ASI    P   P F      F F+SSPL L FP     S  P  RAL+T  +G +I + + Y S+LLR+P            E     EE   E+ E
Subjt:  MAMASILKPPPF--PPFHSLNPNF-FNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEE

Query:  EVEWVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIK
          E+VDWEDKILE TVPLVGFVRM+LH+GKY N DRL PEHE+TI+E LLPYHPE EKKIGCG+DYI VG+HPDFESSRC+FIVRKDGE+VDFSYWKCIK
Subjt:  EVEWVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIK

Query:  GLIRKNYPLYAESFILRHFRRRRRN
        GLI+K YPLYA+SFILRHFR+RR+N
Subjt:  GLIRKNYPLYAESFILRHFRRRRRN

AT1G45230.2 Protein of unknown function (DUF3223)1.8e-6960.44Show/hide
Query:  MAMASILKPPPF--PPFHSLNPNF-FNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEE
        M++ASI    P   P F      F F+SSPL L FP     S  P  RAL+T  +G +I + + Y S+LLR+P            E     EE   E+ E
Subjt:  MAMASILKPPPF--PPFHSLNPNF-FNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEE

Query:  EVEWVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIK
          E+VDWEDKILE TVPLVGFVRM+LH+GKY N DRL PEHE+TI+E LLPYHPE EKKIGCG+DYI V +HPDFESSRC+FIVRKDGE+VDFSYWKCIK
Subjt:  EVEWVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIK

Query:  GLIRKNYPLYAESFILRHFRRRRRN
        GLI+K YPLYA+SFILRHFR+RR+N
Subjt:  GLIRKNYPLYAESFILRHFRRRRRN

AT2G40030.1 nuclear RNA polymerase D1B2.8e-2238.84Show/hide
Query:  EDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLIRKNY
        E ++L D  P++  +R ++H   Y +GD +  + +  +LE++L +HP+ E K+G GVD+ITV  H  F  SRC F+V  DG   DFSY K +   + K Y
Subjt:  EDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLIRKNY

Query:  PLYAESFILRHFRRRRRNSRR
        P  AE FI ++F + R +  R
Subjt:  PLYAESFILRHFRRRRRNSRR

AT3G46630.1 Protein of unknown function (DUF3223)3.0e-3248.8Show/hide
Query:  EDEEEVEWVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYW
        ED +  +W + E +IL D  P+    + +LH+ +Y +G+RL  E EK ++E+LLPYHP S+ KIGCG+D+I V  HP F  SRCLF+VR DG  +DFSY 
Subjt:  EDEEEVEWVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYW

Query:  KCIKGLIRKNYPLYAESFILRHFRR
        KC++  +R  YP +AE FI  HF+R
Subjt:  KCIKGLIRKNYPLYAESFILRHFRR

AT5G62440.1 Protein of unknown function (DUF3223)1.4e-0531.01Show/hide
Query:  GPSAKDLAGPSEDDGSSEESGNEDEEEVEWVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPD
        G S K   G  E  G  +    E    V   D+  K L        F    L   KYE+           +L+ +   H E EKKIG G+    V  HP 
Subjt:  GPSAKDLAGPSEDDGSSEESGNEDEEEVEWVDWEDKILEDTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPD

Query:  FESSRCLFIVRKDGEMVDFSYWKCIKGLI
        ++ SRC F+VR+D    DFS+ KC+  ++
Subjt:  FESSRCLFIVRKDGEMVDFSYWKCIKGLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATGGCGTCCATTTTGAAACCACCGCCATTTCCGCCCTTTCACTCTCTAAATCCAAACTTCTTCAACTCTTCACCACTGATCTTATGTTTTCCTACACACCCAAT
CAATTCGTTTCACCCATCTACTCGTGCCCTCAAAACTGGCCCTGAAGGCATTAGAATTCGAAGCCATCAAGAATATAGTTCCGATTTGCTGCGGAAACCGGTTGGTCCAT
CGGCGAAGGACTTGGCTGGACCATCGGAGGATGACGGCAGCAGTGAGGAGAGTGGAAATGAAGACGAGGAGGAAGTGGAGTGGGTTGATTGGGAGGACAAGATTTTGGAG
GATACTGTTCCTCTAGTTGGCTTTGTTAGGATGGTTCTTCACACTGGAAAATATGAAAATGGGGATAGGTTGAGACCAGAGCACGAGAAAACAATTCTTGAGAGGTTGCT
TCCATATCATCCTGAGAGTGAGAAGAAGATTGGATGTGGGGTTGATTATATCACGGTTGGATATCATCCTGATTTTGAAAGCTCAAGATGTTTATTCATAGTCAGAAAAG
ATGGAGAGATGGTTGACTTTTCATATTGGAAGTGCATCAAGGGTCTGATCAGAAAGAATTATCCTCTTTACGCAGAAAGCTTCATTCTTAGGCATTTTCGGCGACGTAGA
CGCAATTCCCGTCGGTAA
mRNA sequenceShow/hide mRNA sequence
TGCGGATTGAAGAGAAATCCTGTAGAATCTCCAATCCATGAGATTGATGATAATGTGAGCGACCGTTAACTGTTCTTCTTCCTCCGTCTTCTCTAACAATTTGGGAGAAA
AGCCATGCTCCGAAATCGCACACTACCATTTCATTCTCAGTAGTTGCAAATTCAAGCTCCTTGTTTCGATTGATCAAGGGCATGGCCATGGCGTCCATTTTGAAACCACC
GCCATTTCCGCCCTTTCACTCTCTAAATCCAAACTTCTTCAACTCTTCACCACTGATCTTATGTTTTCCTACACACCCAATCAATTCGTTTCACCCATCTACTCGTGCCC
TCAAAACTGGCCCTGAAGGCATTAGAATTCGAAGCCATCAAGAATATAGTTCCGATTTGCTGCGGAAACCGGTTGGTCCATCGGCGAAGGACTTGGCTGGACCATCGGAG
GATGACGGCAGCAGTGAGGAGAGTGGAAATGAAGACGAGGAGGAAGTGGAGTGGGTTGATTGGGAGGACAAGATTTTGGAGGATACTGTTCCTCTAGTTGGCTTTGTTAG
GATGGTTCTTCACACTGGAAAATATGAAAATGGGGATAGGTTGAGACCAGAGCACGAGAAAACAATTCTTGAGAGGTTGCTTCCATATCATCCTGAGAGTGAGAAGAAGA
TTGGATGTGGGGTTGATTATATCACGGTTGGATATCATCCTGATTTTGAAAGCTCAAGATGTTTATTCATAGTCAGAAAAGATGGAGAGATGGTTGACTTTTCATATTGG
AAGTGCATCAAGGGTCTGATCAGAAAGAATTATCCTCTTTACGCAGAAAGCTTCATTCTTAGGCATTTTCGGCGACGTAGACGCAATTCCCGTCGGTAACAAATGTAAGA
TCTGTTAATCATACTCTTGTATCATTCAATTTCAGGAATTCTTTGAATATCAAAGCTTGAGATTGGACCAGCCACGCTTGTGTGGTTCTCTTGTGTTTAATGACTTGAAA
TTAACAAATCAAGATGGATATGGGGTGAATATAGACTCTTGCTTAGTAAAATTCAATTTTGTAAATTCCAACAGTTGCCTCCAGTTTTCCTTGATCCAATTCATGCTTAG
TCTCTCCC
Protein sequenceShow/hide protein sequence
MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRIRSHQEYSSDLLRKPVGPSAKDLAGPSEDDGSSEESGNEDEEEVEWVDWEDKILE
DTVPLVGFVRMVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFIVRKDGEMVDFSYWKCIKGLIRKNYPLYAESFILRHFRRRR
RNSRR