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CSPI04G24980 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G24980
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPre-mRNA-processing protein 40A isoform X1
Genome locationChr4:22538994..22539413
RNA-Seq ExpressionCSPI04G24980
SyntenyCSPI04G24980
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064468.1 hypothetical protein E6C27_scaffold255G001830 [Cucumis melo var. makuwa]2.8e-6189.47Show/hide
Query:  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCD--GDDPLKKQLQPPPCTPARKGNKK-LQKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGG
        MACNNKTHSRGRVAFSWEN+PGVCKAAVAPP+ FCD   DDPLKK+LQPPPCTPARKGNKK LQKDGGAEDPFLAAY+ECTSEDDEK CKLKKNK GFGG
Subjt:  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCD--GDDPLKKQLQPPPCTPARKGNKK-LQKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGG

Query:  WMTTNFFCNLSCKQLTAVRDDSLISSPDSKRTV
        WMT NFF NLSCKQLTAVRDDSLISSP SKRTV
Subjt:  WMTTNFFCNLSCKQLTAVRDDSLISSPDSKRTV

KAE8649893.1 hypothetical protein Csa_012691 [Cucumis sativus]2.8e-4598.86Show/hide
Query:  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKLQKDGGAEDPFLAAYKECTSEDDEKTCKL
        MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKLQKDGGAEDPFLAAYKECTSEDDEKTC L
Subjt:  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKLQKDGGAEDPFLAAYKECTSEDDEKTCKL

KAG6591440.1 Pre-mRNA-processing protein 40A, partial [Cucurbita argyrosperma subsp. sororia]4.4e-3068.42Show/hide
Query:  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKLQKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGF
        M C+N+ HSRGRVAFSWENKPG CKAAVAPP      DD  +K+L+PPPCT ARKG KK+QKDG  EDPFLAA++EC++ +DEK CKLK+NK+GF
Subjt:  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKLQKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGF

KAG7024319.1 hypothetical protein SDJN02_13133, partial [Cucurbita argyrosperma subsp. argyrosperma]4.4e-3068.42Show/hide
Query:  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKLQKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGF
        M C+N+ HSRGRVAFSWENKPG CKAAVAPP      DD  +K+L+PPPCT ARKG KK+QKDG  EDPFLAA++EC++ +DEK CKLK+NK+GF
Subjt:  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKLQKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGF

OMO70852.1 hypothetical protein COLO4_28461 [Corchorus olitorius]7.0e-1236.99Show/hide
Query:  KTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTP------------------------------ARKGNKKLQKDGGAEDPFLAAYK
        K HS+G V FSWENKPGVCK         C  +D   ++L PPPC P                              +R+G KK      ++DPFLAAYK
Subjt:  KTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTP------------------------------ARKGNKKLQKDGGAEDPFLAAYK

Query:  ECTSEDDEKTCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRDDSLI
        ECT   ++   KL KN +G G         + SCKQ  +VRDD+L+
Subjt:  ECTSEDDEKTCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRDDSLI

TrEMBL top hitse value%identityAlignment
A0A0A0L2M9 Uncharacterized protein1.3e-72100Show/hide
Query:  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKLQKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGGWMT
        MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKLQKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGGWMT
Subjt:  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKLQKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGGWMT

Query:  TNFFCNLSCKQLTAVRDDSLISSPDSKRTV
        TNFFCNLSCKQLTAVRDDSLISSPDSKRTV
Subjt:  TNFFCNLSCKQLTAVRDDSLISSPDSKRTV

A0A0D2U7X0 Uncharacterized protein1.3e-1138.69Show/hide
Query:  SRGRVAFSWENKPGVCKAAVAPPHGFCDGDD--PLKKQLQPPPC----------------------TPARKGNKKLQKDGGAEDPFLAAYKECTSEDDEK
        S+G V FSWENKPG+ K        F +GDD   L+K+L PPPC                       P R  +K    DGG +DPFLAAYKECT   +  
Subjt:  SRGRVAFSWENKPGVCKAAVAPPHGFCDGDD--PLKKQLQPPPC----------------------TPARKGNKKLQKDGGAEDPFLAAYKECTSEDDEK

Query:  TCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRDDSLI
             K K G G ++    F + +CK    VRDDSL+
Subjt:  TCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRDDSLI

A0A1R3HKK6 Uncharacterized protein3.4e-1236.99Show/hide
Query:  KTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTP------------------------------ARKGNKKLQKDGGAEDPFLAAYK
        K HS+G V FSWENKPGVCK         C  +D   ++L PPPC P                              +R+G KK      ++DPFLAAYK
Subjt:  KTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTP------------------------------ARKGNKKLQKDGGAEDPFLAAYK

Query:  ECTSEDDEKTCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRDDSLI
        ECT   ++   KL KN +G G         + SCKQ  +VRDD+L+
Subjt:  ECTSEDDEKTCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRDDSLI

A0A5A7VA56 Uncharacterized protein1.4e-6189.47Show/hide
Query:  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCD--GDDPLKKQLQPPPCTPARKGNKK-LQKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGG
        MACNNKTHSRGRVAFSWEN+PGVCKAAVAPP+ FCD   DDPLKK+LQPPPCTPARKGNKK LQKDGGAEDPFLAAY+ECTSEDDEK CKLKKNK GFGG
Subjt:  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCD--GDDPLKKQLQPPPCTPARKGNKK-LQKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGG

Query:  WMTTNFFCNLSCKQLTAVRDDSLISSPDSKRTV
        WMT NFF NLSCKQLTAVRDDSLISSP SKRTV
Subjt:  WMTTNFFCNLSCKQLTAVRDDSLISSPDSKRTV

A0A5B7BYG1 Uncharacterized protein4.4e-1238.3Show/hide
Query:  NNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPC----------------------TPARKGNKK-LQKDGGAEDPFLAAYKECTSE
        NNK HS+G V FSWENKPGV K      H     +   K +L PPPC                       P+R  +K+ L+K+   +DPFL AYKECT  
Subjt:  NNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPC----------------------TPARKGNKK-LQKDGGAEDPFLAAYKECTSE

Query:  DDEKTCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRDDSLI
          +     KK+  GFG     + F   SCKQ  +VRDD++I
Subjt:  DDEKTCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRDDSLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTGCAACAACAAAACCCATTCAAGAGGTAGAGTGGCTTTCTCGTGGGAAAATAAGCCCGGGGTGTGCAAAGCAGCGGTGGCGCCACCCCACGGCTTCTGTGACGG
CGACGATCCGTTGAAGAAGCAGCTGCAGCCACCGCCATGTACTCCGGCGAGAAAGGGCAACAAGAAGCTGCAGAAAGATGGGGGCGCTGAAGACCCTTTTCTTGCGGCGT
ACAAAGAGTGCACGAGTGAAGATGATGAGAAGACTTGTAAGTTGAAGAAGAATAAATCTGGGTTTGGAGGGTGGATGACGACGAACTTTTTTTGTAATTTGTCTTGTAAG
CAATTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGATTCTAAACGAACAGTGTAA
mRNA sequenceShow/hide mRNA sequence
CAAAATTAATCCGATCAACATTGAGCAATGGCCTGCAACAACAAAACCCATTCAAGAGGTAGAGTGGCTTTCTCGTGGGAAAATAAGCCCGGGGTGTGCAAAGCAGCGGT
GGCGCCACCCCACGGCTTCTGTGACGGCGACGATCCGTTGAAGAAGCAGCTGCAGCCACCGCCATGTACTCCGGCGAGAAAGGGCAACAAGAAGCTGCAGAAAGATGGGG
GCGCTGAAGACCCTTTTCTTGCGGCGTACAAAGAGTGCACGAGTGAAGATGATGAGAAGACTTGTAAGTTGAAGAAGAATAAATCTGGGTTTGGAGGGTGGATGACGACG
AACTTTTTTTGTAATTTGTCTTGTAAGCAATTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGATTCTAAACGAACAGTGTAA
Protein sequenceShow/hide protein sequence
MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKLQKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGGWMTTNFFCNLSCK
QLTAVRDDSLISSPDSKRTV