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CSPI04G25470 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G25470
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionleucine-rich repeat extensin-like protein 2
Genome locationChr4:22869527..22870079
RNA-Seq ExpressionCSPI04G25470
SyntenyCSPI04G25470
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649911.1 hypothetical protein Csa_012510 [Cucumis sativus]2.0e-6897.67Show/hide
Query:  MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSYIPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARP
        MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSYIPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARP
Subjt:  MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSYIPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARP

Query:  SGEMPQTVGPRDYSYPYYYFYSSNSAVHQ
        SGEMPQTVGPRDYSYPYYYFYSSNS V +
Subjt:  SGEMPQTVGPRDYSYPYYYFYSSNSAVHQ

KAG6608366.1 Conserved oligomeric Golgi complex subunit 8, partial [Cucurbita argyrosperma subsp. sororia]5.7e-3967.72Show/hide
Query:  MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL--SYIPPPPPNFYGGFNMAPPA-TPSYYLWGPPPPVANYFLG
        MPF G      S GLW++A  LF   S AQ+ VPSTGQLCIS C TCPV+CT P P    +YIPPPPP FYGG+   PPA T SY+L GPPPPVANY  G
Subjt:  MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL--SYIPPPPPNFYGGFNMAPPA-TPSYYLWGPPPPVANYFLG

Query:  ARPSGEMPQTVGPRDYSYPYYYFYSSN
        A+PSG+MPQTVGPRDYSYPYYYFYSSN
Subjt:  ARPSGEMPQTVGPRDYSYPYYYFYSSN

XP_022940707.1 leucine-rich repeat extensin-like protein 2 [Cucurbita moschata]7.5e-3967.72Show/hide
Query:  MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL--SYIPPPPPNFYGGFNMAPPA-TPSYYLWGPPPPVANYFLG
        MPF G  R   S GLW++A  LF   S AQ+ VPSTGQLCIS C TCPV+CT P P    +YIPPPPP FYGG+   PPA T SY+L GP PPVANY  G
Subjt:  MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL--SYIPPPPPNFYGGFNMAPPA-TPSYYLWGPPPPVANYFLG

Query:  ARPSGEMPQTVGPRDYSYPYYYFYSSN
        A+PSG+MPQTVGPRDYSYPYYYFYSSN
Subjt:  ARPSGEMPQTVGPRDYSYPYYYFYSSN

XP_022981722.1 leucine-rich repeat extensin-like protein 1 [Cucurbita maxima]1.7e-3563.43Show/hide
Query:  MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAP---PPPLSYI------PPPPPNFYGGFNMAPPA-TPSYYLWGPPPP
        MPF G  R   S GL ++A  LF   S AQ+ VPST QLCIS C TCPV+CT P   P P SY       PPPPP FYGG+   PPA T SY+  GPPPP
Subjt:  MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAP---PPPLSYI------PPPPPNFYGGFNMAPPA-TPSYYLWGPPPP

Query:  VANYFLGARPSGEMPQTVGPRDYSYPYYYFYSSN
        VANY  GA+PSG+MPQTVGPRDYSYPYYYFYSSN
Subjt:  VANYFLGARPSGEMPQTVGPRDYSYPYYYFYSSN

XP_023523402.1 leucine-rich repeat extensin-like protein 2 [Cucurbita pepo subsp. pepo]2.3e-3269.64Show/hide
Query:  VAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL--SYI--PPPPPNFYGGFNMAPPA-TPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRD
        +A  LF   S AQ+ VPSTGQLCIS C TCPV+CT P P    +YI  PPPPP FYGG+   PPA T SY+L GPPPPVANY  GA+PSG+MPQTVGPRD
Subjt:  VAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL--SYI--PPPPPNFYGGFNMAPPA-TPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRD

Query:  YSYPYYYFYSSN
        YSYPYYYFYSSN
Subjt:  YSYPYYYFYSSN

TrEMBL top hitse value%identityAlignment
A0A0A0L054 Microtubule associated protein (Ase1)4.8e-68100Show/hide
Query:  MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSYIPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARP
        MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSYIPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARP
Subjt:  MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSYIPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARP

Query:  SGEMPQTVGPRDYSYPYYYFYSSNS
        SGEMPQTVGPRDYSYPYYYFYSSNS
Subjt:  SGEMPQTVGPRDYSYPYYYFYSSNS

A0A2N9HA71 Uncharacterized protein7.8e-1843.88Show/hide
Query:  LWIVA-FTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPP-----------------PPLSYI--PPPPPNFYGGFN---MAPPATPSYYLWGPPPPV
        +WI+    L + +S+ Q+  PS+G LCISDC+TCPVIC+ PP                 PP SY   PPPPP+          +PP   SY  WG PPP 
Subjt:  LWIVA-FTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPP-----------------PPLSYI--PPPPPNFYGGFN---MAPPATPSYYLWGPPPPV

Query:  ANYFLGARPSG----EMPQTVGPRDYSYPYYYFYSSNSA
          YF    PSG     MP   GP DY YPYYYFYSS +A
Subjt:  ANYFLGARPSG----EMPQTVGPRDYSYPYYYFYSSNSA

A0A5B7BE41 Putative extensin (Fragment)1.5e-1645.54Show/hide
Query:  SSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL-SYIPPPPP----------NFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYS
        +S  Q ++P+ G LCISDC+TCPVIC+ PPPP+ S +PPP P          ++Y      PP  PSY  WG  PP  + ++   PS +MP  +  R+YS
Subjt:  SSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL-SYIPPPPP----------NFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYS

Query:  YPYYYFYSSNSA
        YPYYYFY+SN +
Subjt:  YPYYYFYSSNSA

A0A6J1FKD3 leucine-rich repeat extensin-like protein 23.6e-3967.72Show/hide
Query:  MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL--SYIPPPPPNFYGGFNMAPPA-TPSYYLWGPPPPVANYFLG
        MPF G  R   S GLW++A  LF   S AQ+ VPSTGQLCIS C TCPV+CT P P    +YIPPPPP FYGG+   PPA T SY+L GP PPVANY  G
Subjt:  MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL--SYIPPPPPNFYGGFNMAPPA-TPSYYLWGPPPPVANYFLG

Query:  ARPSGEMPQTVGPRDYSYPYYYFYSSN
        A+PSG+MPQTVGPRDYSYPYYYFYSSN
Subjt:  ARPSGEMPQTVGPRDYSYPYYYFYSSN

A0A6J1IUS7 leucine-rich repeat extensin-like protein 18.3e-3663.43Show/hide
Query:  MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAP---PPPLSYI------PPPPPNFYGGFNMAPPA-TPSYYLWGPPPP
        MPF G  R   S GL ++A  LF   S AQ+ VPST QLCIS C TCPV+CT P   P P SY       PPPPP FYGG+   PPA T SY+  GPPPP
Subjt:  MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAP---PPPLSYI------PPPPPNFYGGFNMAPPA-TPSYYLWGPPPP

Query:  VANYFLGARPSGEMPQTVGPRDYSYPYYYFYSSN
        VANY  GA+PSG+MPQTVGPRDYSYPYYYFYSSN
Subjt:  VANYFLGARPSGEMPQTVGPRDYSYPYYYFYSSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G11990.1 proline-rich family protein1.8e-0628.31Show/hide
Query:  LWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPP--------------PLSYIPPPPPNFYGG-------------FNMAPPATPSYYLW--
        L +V     S S +  +  P    LCIS+CSTCP IC+ PP               PLS  PPPPP                    +  P  P +Y +  
Subjt:  LWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPP--------------PLSYIPPPPPNFYGG-------------FNMAPPATPSYYLW--

Query:  -GPPPPVANYFLGARPS------GEMPQTVGPRD--YSYPYYYFYSSNSAVHQIRDKITVSSVGNS
          PPPP++    G+ PS          Q+ G +   Y +PY+YFY++++A         ++ V +S
Subjt:  -GPPPPVANYFLGARPS------GEMPQTVGPRD--YSYPYYYFYSSNSAVHQIRDKITVSSVGNS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGTTTCCAGGAACAAGGCGAATTCTCGGCTCTTTCGGGCTATGGATTGTCGCATTCACTTTGTTTTCAGCATCATCCAAAGCCCAGATGGCTGTCCCCTCCACCGG
ACAGCTCTGCATCAGCGATTGCTCCACCTGTCCCGTGATTTGCACGGCGCCGCCTCCTCCACTCTCTTACATTCCGCCTCCGCCGCCCAACTTTTACGGTGGGTTCAATA
TGGCACCACCGGCTACTCCGTCGTACTATTTATGGGGTCCGCCGCCTCCGGTTGCGAATTATTTTTTGGGCGCTCGGCCTTCCGGTGAGATGCCCCAAACGGTGGGGCCT
CGGGATTATTCTTACCCTTATTATTATTTCTACAGTTCAAATTCGGCGGTTCATCAAATCCGTGATAAGATAACAGTGTCGAGTGTAGGTAACAGTGGAGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCGTTTCCAGGAACAAGGCGAATTCTCGGCTCTTTCGGGCTATGGATTGTCGCATTCACTTTGTTTTCAGCATCATCCAAAGCCCAGATGGCTGTCCCCTCCACCGG
ACAGCTCTGCATCAGCGATTGCTCCACCTGTCCCGTGATTTGCACGGCGCCGCCTCCTCCACTCTCTTACATTCCGCCTCCGCCGCCCAACTTTTACGGTGGGTTCAATA
TGGCACCACCGGCTACTCCGTCGTACTATTTATGGGGTCCGCCGCCTCCGGTTGCGAATTATTTTTTGGGCGCTCGGCCTTCCGGTGAGATGCCCCAAACGGTGGGGCCT
CGGGATTATTCTTACCCTTATTATTATTTCTACAGTTCAAATTCGGCGGTTCATCAAATCCGTGATAAGATAACAGTGTCGAGTGTAGGTAACAGTGGAGTGTAG
Protein sequenceShow/hide protein sequence
MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSYIPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGP
RDYSYPYYYFYSSNSAVHQIRDKITVSSVGNSGV