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CSPI04G25630 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G25630
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionProtein RKD2-like isoform X1
Genome locationChr4:22943915..22944939
RNA-Seq ExpressionCSPI04G25630
SyntenyCSPI04G25630
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR044607 - Transcription factor RKD-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064525.1 protein RKD2-like isoform X1 [Cucumis melo var. makuwa]1.5e-9589.01Show/hide
Query:  MADSGDGEFPSWQFHRNYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPTFTSGEATSAADVEYWNSTVEPSGSSNYYFFPGEISRWECQEPQNFQ
        MADSGDGEFP W+FH+NYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPT TSGEATSAADV+YWNSTV PS SSNYYFFPGE SRWECQE QNFQ
Subjt:  MADSGDGEFPSWQFHRNYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPTFTSGEATSAADVEYWNSTVEPSGSSNYYFFPGEISRWECQEPQNFQ

Query:  TPGYY----GGDDGGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSFTQYKMFE
         PGYY    G DD GVYNMQLPI PESNTFQPI CSCCLVLREI+HTNGINTRKLEIHGRFGILWHAILEENFP LGGTNSSSFTQYKMF+
Subjt:  TPGYY----GGDDGGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSFTQYKMFE

KAG6608345.1 Protein RKD4, partial [Cucurbita argyrosperma subsp. sororia]6.7e-5663.83Show/hide
Query:  MADSGDGEFPSWQFHRNYPLFTDD-ILNFMAQIKPTAAELMAKSPAADQSLLPPTFTSGEATSAADVEYWNSTVEPSGSSNYYFFPGEISRWECQEPQNF
        MADSGD EFP W FH+N PLFTDD IL+FMA IKPTAAEL+A S A DQ   PP+ TSGE    A++EYW+STV     S+Y+ FPGE          +F
Subjt:  MADSGDGEFPSWQFHRNYPLFTDD-ILNFMAQIKPTAAELMAKSPAADQSLLPPTFTSGEATSAADVEYWNSTVEPSGSSNYYFFPGEISRWECQEPQNF

Query:  QTPGYYGGDDGGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSFTQYKMFE
          PG YGGD GG  + Q  ITPE +TFQPI CSCCL+LREIVHTNGINTRKLEIHGRFGILWHAIL+E FP    TN S+  QYKMF+
Subjt:  QTPGYYGGDDGGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSFTQYKMFE

KAG7037698.1 Protein RKD3, partial [Cucurbita argyrosperma subsp. argyrosperma]3.3e-5563.64Show/hide
Query:  MADSGDGEFPSWQFHRNYPLFTDD-ILNFMAQIKPTAAELMAKSPAADQSLLPPTFTSGEATSAADVEYWNSTVEPSGSSNYYFFPGEISRWECQEPQNF
        MADSGD EFP W FH+N PLFTDD IL+FMA IKPTAAEL+A S A DQ   PP+ TSGE    A++EYW+STV     S+Y+ FPGE          +F
Subjt:  MADSGDGEFPSWQFHRNYPLFTDD-ILNFMAQIKPTAAELMAKSPAADQSLLPPTFTSGEATSAADVEYWNSTVEPSGSSNYYFFPGEISRWECQEPQNF

Query:  QTPGYYGGDDGGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSFTQYKMF
          PG YGGD GG  + Q  ITPE +TFQPI CSCCL+LREIVHTNGINTRKLEIHGRFGILWHAIL+E FP    TN S+  QYK+F
Subjt:  QTPGYYGGDDGGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSFTQYKMF

KGN55365.1 hypothetical protein Csa_012027 [Cucumis sativus]1.2e-10598.4Show/hide
Query:  MADSGDGEFPSWQFHRNYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPTFTSGEATSAADVEYWNSTVEPSGSSNYYFFPGEISRWECQEPQNFQ
        MADSGDGEFPSWQFHRNYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPTFTSGEATSAADVEYWNSTVEPSGSSNYYFFPGE SRWECQEPQNFQ
Subjt:  MADSGDGEFPSWQFHRNYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPTFTSGEATSAADVEYWNSTVEPSGSSNYYFFPGEISRWECQEPQNFQ

Query:  TPGYYGGDDGGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSFTQYKMFE
        TPGYYG D GGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSFTQYKMFE
Subjt:  TPGYYGGDDGGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSFTQYKMFE

TYK20065.1 protein RKD2-like isoform X1 [Cucumis melo var. makuwa]1.5e-9589.01Show/hide
Query:  MADSGDGEFPSWQFHRNYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPTFTSGEATSAADVEYWNSTVEPSGSSNYYFFPGEISRWECQEPQNFQ
        MADSGDGEFP W+FH+NYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPT TSGEATSAADV+YWNSTV PS SSNYYFFPGE SRWECQE QNFQ
Subjt:  MADSGDGEFPSWQFHRNYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPTFTSGEATSAADVEYWNSTVEPSGSSNYYFFPGEISRWECQEPQNFQ

Query:  TPGYY----GGDDGGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSFTQYKMFE
         PGYY    G DD GVYNMQLPI PESNTFQPI CSCCLVLREI+HTNGINTRKLEIHGRFGILWHAILEENFP LGGTNSSSFTQYKMF+
Subjt:  TPGYY----GGDDGGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSFTQYKMFE

TrEMBL top hitse value%identityAlignment
A0A0A0L065 Uncharacterized protein5.8e-10698.4Show/hide
Query:  MADSGDGEFPSWQFHRNYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPTFTSGEATSAADVEYWNSTVEPSGSSNYYFFPGEISRWECQEPQNFQ
        MADSGDGEFPSWQFHRNYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPTFTSGEATSAADVEYWNSTVEPSGSSNYYFFPGE SRWECQEPQNFQ
Subjt:  MADSGDGEFPSWQFHRNYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPTFTSGEATSAADVEYWNSTVEPSGSSNYYFFPGEISRWECQEPQNFQ

Query:  TPGYYGGDDGGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSFTQYKMFE
        TPGYYG D GGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSFTQYKMFE
Subjt:  TPGYYGGDDGGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSFTQYKMFE

A0A4S4EM60 RWP-RK domain-containing protein1.9e-1143.9Show/hide
Query:  YWNSTVEPSGS-SNYYFFPGEISRWE--CQEPQNFQTPGYYGGDDGGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAI
        Y+ +T  PS S +    F GE SR E   Q PQN +    +G        +QLPI P      P +C+CC VLREI+HTNGI   KLEIHGR G++ HAI
Subjt:  YWNSTVEPSGS-SNYYFFPGEISRWE--CQEPQNFQTPGYYGGDDGGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAI

Query:  LEENFPTLGGTNSSSFTQYKMFE
        LE   P  G   + +  QY MF+
Subjt:  LEENFPTLGGTNSSSFTQYKMFE

A0A5A7V999 Protein RKD2-like isoform X14.1e-1147.31Show/hide
Query:  EPQNFQTPGYYGGDDGGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSFTQYKMFE
        E ++ Q    Y      V +  LPI P   T  P  CSCC VLRE +HTNG+N+RKLEIHGR G++ HAILE   P +   N S   QY+MF+
Subjt:  EPQNFQTPGYYGGDDGGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSFTQYKMFE

A0A5A7VF79 Protein RKD2-like isoform X17.1e-9689.01Show/hide
Query:  MADSGDGEFPSWQFHRNYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPTFTSGEATSAADVEYWNSTVEPSGSSNYYFFPGEISRWECQEPQNFQ
        MADSGDGEFP W+FH+NYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPT TSGEATSAADV+YWNSTV PS SSNYYFFPGE SRWECQE QNFQ
Subjt:  MADSGDGEFPSWQFHRNYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPTFTSGEATSAADVEYWNSTVEPSGSSNYYFFPGEISRWECQEPQNFQ

Query:  TPGYY----GGDDGGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSFTQYKMFE
         PGYY    G DD GVYNMQLPI PESNTFQPI CSCCLVLREI+HTNGINTRKLEIHGRFGILWHAILEENFP LGGTNSSSFTQYKMF+
Subjt:  TPGYY----GGDDGGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSFTQYKMFE

A0A5D3D916 Protein RKD2-like isoform X17.1e-9689.01Show/hide
Query:  MADSGDGEFPSWQFHRNYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPTFTSGEATSAADVEYWNSTVEPSGSSNYYFFPGEISRWECQEPQNFQ
        MADSGDGEFP W+FH+NYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPT TSGEATSAADV+YWNSTV PS SSNYYFFPGE SRWECQE QNFQ
Subjt:  MADSGDGEFPSWQFHRNYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPTFTSGEATSAADVEYWNSTVEPSGSSNYYFFPGEISRWECQEPQNFQ

Query:  TPGYY----GGDDGGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSFTQYKMFE
         PGYY    G DD GVYNMQLPI PESNTFQPI CSCCLVLREI+HTNGINTRKLEIHGRFGILWHAILEENFP LGGTNSSSFTQYKMF+
Subjt:  TPGYY----GGDDGGVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSFTQYKMFE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G16100.1 unknown protein7.5e-0542.11Show/hide
Query:  GGVYNMQLPITPESNTFQPIACSCCLVLREIVH-TNGINTRKLEIHGRFGILWHAIL
        GG   M +P+T   +     AC+CC +LRE+VH   G    KL+I+G  G + HAIL
Subjt:  GGVYNMQLPITPESNTFQPIACSCCLVLREIVH-TNGINTRKLEIHGRFGILWHAIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGACTCAGGGGACGGCGAGTTCCCCTCGTGGCAATTCCATCGGAATTACCCTTTATTCACCGACGACATTCTCAATTTTATGGCCCAAATCAAGCCCACCGCCGC
TGAATTAATGGCCAAATCCCCCGCTGCAGACCAAAGTTTACTACCACCCACTTTCACTTCCGGTGAAGCCACCTCCGCCGCTGACGTGGAGTATTGGAATTCTACAGTGG
AACCTTCCGGTAGTAGTAATTACTATTTCTTCCCCGGCGAAATTAGTCGTTGGGAATGTCAAGAACCACAAAATTTTCAAACTCCGGGTTACTACGGCGGCGACGACGGC
GGTGTTTACAATATGCAACTTCCTATTACGCCTGAGAGTAATACGTTTCAACCTATTGCTTGTAGTTGCTGCCTTGTTCTTAGAGAAATCGTTCATACCAATGGTATCAA
CACAAGAAAGCTAGAGATCCATGGAAGATTTGGAATATTGTGGCATGCAATTCTAGAAGAAAATTTCCCCACCCTAGGTGGCACCAACTCTTCGAGCTTCACTCAATACA
AAATGTTCGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGACTCAGGGGACGGCGAGTTCCCCTCGTGGCAATTCCATCGGAATTACCCTTTATTCACCGACGACATTCTCAATTTTATGGCCCAAATCAAGCCCACCGCCGC
TGAATTAATGGCCAAATCCCCCGCTGCAGACCAAAGTTTACTACCACCCACTTTCACTTCCGGTGAAGCCACCTCCGCCGCTGACGTGGAGTATTGGAATTCTACAGTGG
AACCTTCCGGTAGTAGTAATTACTATTTCTTCCCCGGCGAAATTAGTCGTTGGGAATGTCAAGAACCACAAAATTTTCAAACTCCGGGTTACTACGGCGGCGACGACGGC
GGTGTTTACAATATGCAACTTCCTATTACGCCTGAGAGTAATACGTTTCAACCTATTGCTTGTAGTTGCTGCCTTGTTCTTAGAGAAATCGTTCATACCAATGGTATCAA
CACAAGAAAGCTAGAGATCCATGGAAGATTTGGAATATTGTGGCATGCAATTCTAGAAGAAAATTTCCCCACCCTAGGTGGCACCAACTCTTCGAGCTTCACTCAATACA
AAATGTTCGAGTAA
Protein sequenceShow/hide protein sequence
MADSGDGEFPSWQFHRNYPLFTDDILNFMAQIKPTAAELMAKSPAADQSLLPPTFTSGEATSAADVEYWNSTVEPSGSSNYYFFPGEISRWECQEPQNFQTPGYYGGDDG
GVYNMQLPITPESNTFQPIACSCCLVLREIVHTNGINTRKLEIHGRFGILWHAILEENFPTLGGTNSSSFTQYKMFE