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CSPI04G26530 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G26530
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDNA ligase
Genome locationChr4:23623572..23624277
RNA-Seq ExpressionCSPI04G26530
SyntenyCSPI04G26530
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7031776.1 hypothetical protein SDJN02_05817, partial [Cucurbita argyrosperma subsp. argyrosperma]9.2e-3571.55Show/hide
Query:  MFNHYNPFSFTHKLKSPISCFRPDH----DPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDD
        M N Y+PFSFT KLKS I CFR DH    + E   +P +P SP LKSM ++ PELRGMCR+LVARI   SRRRYHHS DFRYDPSSYALNFEDEQ+R DD
Subjt:  MFNHYNPFSFTHKLKSPISCFRPDH----DPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDD

Query:  EFPIRDFTSRLPASPP
        EFPIRDF SRLPASPP
Subjt:  EFPIRDFTSRLPASPP

KGN55462.1 hypothetical protein Csa_012581 [Cucumis sativus]3.6e-6399.16Show/hide
Query:  MFNHYNPFSFTHKLKSPISCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPI
        MFNHYNPFSFTHKLKSPISCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPI
Subjt:  MFNHYNPFSFTHKLKSPISCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPI

Query:  RDFTSRLPASPPPVNLMRF
        RDFTSRLPASPP VNLMRF
Subjt:  RDFTSRLPASPPPVNLMRF

XP_008452891.1 PREDICTED: uncharacterized protein LOC103493778 [Cucumis melo]1.8e-5187.6Show/hide
Query:  MFNHYNPFSFTHKLKSPI-SCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFP
        MFNHYNPFSFTHKLKS I SCFRPDHD ELH+N     +PALKSMTSDLPELRGMCRSLVARISWPSRRRYHHS DFRYDPSSYALNFEDEQ+R D+EFP
Subjt:  MFNHYNPFSFTHKLKSPI-SCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFP

Query:  IRDFTSRLPAS-PPPVNLMRF
        IRDFTSRLPAS PPPVNLMRF
Subjt:  IRDFTSRLPAS-PPPVNLMRF

XP_022940408.1 uncharacterized protein LOC111446022 [Cucurbita moschata]9.2e-3571.55Show/hide
Query:  MFNHYNPFSFTHKLKSPISCFRPDH----DPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDD
        M N Y+PFSFT KLKS I CFR DH    + E   +P +P SP LKSM ++ PELRGMCR+LVARI   SRRRYHHS DFRYDPSSYALNFEDEQ+R DD
Subjt:  MFNHYNPFSFTHKLKSPISCFRPDH----DPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDD

Query:  EFPIRDFTSRLPASPP
        EFPIRDF SRLPASPP
Subjt:  EFPIRDFTSRLPASPP

XP_023523424.1 uncharacterized protein LOC111787637 [Cucurbita pepo subsp. pepo]9.2e-3572.17Show/hide
Query:  MFNHYNPFSFTHKLKSPISCFRPDHDPEL-HDNPSSPTSP--ALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDE
        M N Y+PFSFT KLKS I CFR DH   L +++ SSP +P   LKSM ++ PELRGMCR+LVARI   SRRRYHHS DFRYDPSSYALNFEDEQ+R DDE
Subjt:  MFNHYNPFSFTHKLKSPISCFRPDHDPEL-HDNPSSPTSP--ALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDE

Query:  FPIRDFTSRLPASPP
        FPIRDF SRLPASPP
Subjt:  FPIRDFTSRLPASPP

TrEMBL top hitse value%identityAlignment
A0A0A0L4E2 Uncharacterized protein1.7e-6399.16Show/hide
Query:  MFNHYNPFSFTHKLKSPISCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPI
        MFNHYNPFSFTHKLKSPISCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPI
Subjt:  MFNHYNPFSFTHKLKSPISCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPI

Query:  RDFTSRLPASPPPVNLMRF
        RDFTSRLPASPP VNLMRF
Subjt:  RDFTSRLPASPPPVNLMRF

A0A1S3BVQ9 uncharacterized protein LOC1034937789.0e-5287.6Show/hide
Query:  MFNHYNPFSFTHKLKSPI-SCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFP
        MFNHYNPFSFTHKLKS I SCFRPDHD ELH+N     +PALKSMTSDLPELRGMCRSLVARISWPSRRRYHHS DFRYDPSSYALNFEDEQ+R D+EFP
Subjt:  MFNHYNPFSFTHKLKSPI-SCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFP

Query:  IRDFTSRLPAS-PPPVNLMRF
        IRDFTSRLPAS PPPVNLMRF
Subjt:  IRDFTSRLPAS-PPPVNLMRF

A0A5A7VBS3 DNA ligase9.0e-5287.6Show/hide
Query:  MFNHYNPFSFTHKLKSPI-SCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFP
        MFNHYNPFSFTHKLKS I SCFRPDHD ELH+N     +PALKSMTSDLPELRGMCRSLVARISWPSRRRYHHS DFRYDPSSYALNFEDEQ+R D+EFP
Subjt:  MFNHYNPFSFTHKLKSPI-SCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFP

Query:  IRDFTSRLPAS-PPPVNLMRF
        IRDFTSRLPAS PPPVNLMRF
Subjt:  IRDFTSRLPAS-PPPVNLMRF

A0A6J1FP70 uncharacterized protein LOC1114460224.5e-3571.55Show/hide
Query:  MFNHYNPFSFTHKLKSPISCFRPDH----DPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDD
        M N Y+PFSFT KLKS I CFR DH    + E   +P +P SP LKSM ++ PELRGMCR+LVARI   SRRRYHHS DFRYDPSSYALNFEDEQ+R DD
Subjt:  MFNHYNPFSFTHKLKSPISCFRPDH----DPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDD

Query:  EFPIRDFTSRLPASPP
        EFPIRDF SRLPASPP
Subjt:  EFPIRDFTSRLPASPP

A0A6J1J1H3 uncharacterized protein LOC1114804171.3e-3469.83Show/hide
Query:  MFNHYNPFSFTHKLKSPISCFRPDH----DPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDD
        M N Y+PFSFT KLKS I CFR DH    + E   +P +P SP LKSM ++ PE+RGMCR+LVARI    RRRYHHS DFRYDPSSYALNFEDEQ+R DD
Subjt:  MFNHYNPFSFTHKLKSPISCFRPDH----DPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDD

Query:  EFPIRDFTSRLPASPP
        EFPIRDF SRLPASPP
Subjt:  EFPIRDFTSRLPASPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G01430.1 BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1)1.1e-0450Show/hide
Query:  FRYDPSSYALNFED--EQLRYDDEFPIRDFTSRLPASPPPVN
        FRYD  SY+LNF+D  +   +DDEFP RD++ R  A   PV+
Subjt:  FRYDPSSYALNFED--EQLRYDDEFPIRDFTSRLPASPPPVN

AT5G11070.1 unknown protein3.8e-1039.67Show/hide
Query:  HKLKSPISCFRPDH--DPE---LHDNPSSPTSPA--LKSMTSDLPELRGMCRSLVARISWPSR----------RRYHHST----DFRYDPSSYALNFEDE
        H+++SPI C   +   +PE   +     +P SP   LKS   +L ELR  CR + +RI    R            +HHS     DF YDP SYALNFED 
Subjt:  HKLKSPISCFRPDH--DPE---LHDNPSSPTSPA--LKSMTSDLPELRGMCRSLVARISWPSR----------RRYHHST----DFRYDPSSYALNFEDE

Query:  QLRYDDEFPIRDFTSRLPASP
         +R DD+    +FT+RLP SP
Subjt:  QLRYDDEFPIRDFTSRLPASP

AT5G14890.1 NHL domain-containing protein4.0e-0447.62Show/hide
Query:  FRYDPSSYALNFED--EQLRYDDEFPIRDFTSRLPASPPPVN
        FRYD  SY+LNF+D  +   ++DEFP RD++ R  A   PV+
Subjt:  FRYDPSSYALNFED--EQLRYDDEFPIRDFTSRLPASPPPVN

AT5G35090.1 unknown protein4.2e-0936.03Show/hide
Query:  SFTHKLKSPI---SCFRP----DHDPELHDNPSSP--TSPALKS------------MTSDLPELRGMCRSLVAR-------ISWPSRRRYHHSTDFRYDP
        S   KLKS      CFR      HD    D PSSP  T  + +S            +T  L +    C+SL+ R       +    +    H+ DF YDP
Subjt:  SFTHKLKSPI---SCFRP----DHDPELHDNPSSP--TSPALKS------------MTSDLPELRGMCRSLVAR-------ISWPSRRRYHHSTDFRYDP

Query:  SSYALNF----EDEQLRYDDEFPIRDFTSRLPASPP
        SSYALNF    ED+ +   D FP+R+F++RLP SPP
Subjt:  SSYALNF----EDEQLRYDDEFPIRDFTSRLPASPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCAACCACTACAATCCATTTTCCTTCACCCACAAGCTCAAATCCCCAATCTCTTGTTTCCGCCCCGATCACGATCCCGAATTACACGATAACCCTTCTTCTCCAAC
ATCTCCTGCTCTCAAATCAATGACCTCTGACCTCCCGGAGCTCCGTGGAATGTGCCGGAGTCTTGTCGCTCGGATCAGCTGGCCGAGTCGCCGACGCTACCATCACTCCA
CTGATTTTCGATACGACCCTTCCAGCTATGCCCTTAATTTCGAGGACGAACAACTTCGATATGACGACGAGTTCCCAATTAGGGATTTCACTTCGAGATTGCCGGCGTCA
CCACCGCCCGTAAATCTCATGCGATTTTGA
mRNA sequenceShow/hide mRNA sequence
CTTCTTCATTCCTCTTCTTATTTTGCTCCCAATAATTCTCTATAAATATCTCTTCTATTTCTCTCCCCCATTTCCATCATCACTGCTTAACTCTCACCTCTCATCCATTT
TTCATTACAAAACTTCCCATCTTCGTCACCATGTTCAACCACTACAATCCATTTTCCTTCACCCACAAGCTCAAATCCCCAATCTCTTGTTTCCGCCCCGATCACGATCC
CGAATTACACGATAACCCTTCTTCTCCAACATCTCCTGCTCTCAAATCAATGACCTCTGACCTCCCGGAGCTCCGTGGAATGTGCCGGAGTCTTGTCGCTCGGATCAGCT
GGCCGAGTCGCCGACGCTACCATCACTCCACTGATTTTCGATACGACCCTTCCAGCTATGCCCTTAATTTCGAGGACGAACAACTTCGATATGACGACGAGTTCCCAATT
AGGGATTTCACTTCGAGATTGCCGGCGTCACCACCGCCCGTAAATCTCATGCGATTTTGAAACCATGGGGTTGGGGATCTTCAGGGAGTCTCTACCCATTGATTCTAACT
GTAATTTGCGATTTGCTAAAGGTGTTATTCGTAGAGCTAAATGTATAGATATCTAAAAAGCTCTCTAATTAATTATTAATTGTATATTCTTTCTATTGTTATTACTAATT
TACTGATTATGTTTGCCTCTAATTTCGTTTAATTTCAATCAACCTT
Protein sequenceShow/hide protein sequence
MFNHYNPFSFTHKLKSPISCFRPDHDPELHDNPSSPTSPALKSMTSDLPELRGMCRSLVARISWPSRRRYHHSTDFRYDPSSYALNFEDEQLRYDDEFPIRDFTSRLPAS
PPPVNLMRF