CuGenDBv2

Gene ID	CSPI04G26760
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2
Genome location	Chr4:23750147..23753477
RNA-Seq Expression	CSPI04G26760
Synteny	CSPI04G26760
Gene Ontology terms	GO:0005747 - mitochondrial respiratory chain complex I (cellular component) GO:0005840 - ribosome (cellular component)
InterPro domains	IPR044980 - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, plant/fungi

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004145533.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis sativus]

9.0e-33

100

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Query:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHGHG
        MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHGHG
Subjt:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHGHG

XP_008452937.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucumis melo]

2.6e-32

96.83

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Query:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHGHG
        MGGGGHGAGTT+KGVTIHPPKRWHTVTGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWEGHGHG
Subjt:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHGHG

XP_022936519.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Cucurbita moschata]

4.2e-30

95.31

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Query:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG-HG
        MGGGGHGAGTTFKG+TIH PKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG HG
Subjt:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG-HG

XP_030447060.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Syzygium oleosum]

6.1e-29

85.29

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Query:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEG-----HGHG
        MGGGGHG GTT+KG+T+H PKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEG     HGHG
Subjt:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEG-----HGHG

XP_038897102.1 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Benincasa hispida]

1.6e-29

92.19

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Query:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG-HG
        MGGGGHGAGTT+KG+T+H PKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG HG
Subjt:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG-HG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L0L4 Uncharacterized protein

4.4e-33

100

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Query:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHGHG
        MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHGHG
Subjt:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHGHG

A0A1S3BV22 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2

1.3e-32

96.83

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Query:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHGHG
        MGGGGHGAGTT+KGVTIHPPKRWHTVTGKGLCA+MWFWVLYRAKQDGPVVLGWRHPWEGHGHG
Subjt:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHGHG

A0A6J1BU57 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2

5.0e-29

93.55

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Query:  GGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG-HG
        GGGHGAGTT+KG+TIH PKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG HG
Subjt:  GGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG-HG

A0A6J1F8I8 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2

2.0e-30

95.31

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Query:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG-HG
        MGGGGHGAGTTFKG+TIH PKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG HG
Subjt:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG-HG

A0A6J1ILY9 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2

2.0e-30

95.31

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Query:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG-HG
        MGGGGHGAGTTFKG+TIH PKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG HG
Subjt:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG-HG

SwissProt top hits

e value

%identity

Alignment

Q8LDK3 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2

2.6e-30

84.38

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Query:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG-HG
        MGGGGHG G T+KGVT+H PK WHTVTGKGLCAVMWFW+LYRAKQDGPVV+GWRHPW+GHG HG
Subjt:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG-HG

Arabidopsis top hits

e value

%identity

Alignment

AT1G76200.1 unknown protein

1.8e-31

84.38

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Query:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG-HG
        MGGGGHG G T+KGVT+H PK WHTVTGKGLCAVMWFW+LYRAKQDGPVV+GWRHPW+GHG HG
Subjt:  MGGGGHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHG-HG

Sequences

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CDS sequence

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ATGTCATGGTCGGTGGGAAGGAGGAACACTAACGATGGAGACGTTGAGGTTGAAGTTGAGATGAGGGTGAGAGTTTTGTCTAAGATCTCGGGAGACTTTGTTATGTTTGG
CAGAGCGAAATATAGAAATAAGAATTATGATTCAATTACCTTAGTAATATCGAACGAGATGGAAAGCAAAGAGCAAGTCCAGACAATAAGGTTTAAAGATGCGTTCTTGG
ATCATCTTTGGGTTGTGGCAGATCGAGGTGAAAAAGTAAAGGTTTTAGAAATGGGTATGTCGGAATTCGGTGATCAGTTGAAAGTGCAGAAGCCAATTATGGGAGGCGGT
GGACATGGAGCTGGAACTACTTTCAAGGGCGTGACCATACACCCGCCAAAGCGATGGCACACCGTCACCGGCAAGGGACTGTGCGCCGTTATGTGGTTTTGGGTGCTATA
CAGGGCGAAACAAGATGGACCTGTAGTACTGGGCTGGAGACATCCATGGGAAGGTCATGGTCATGGCTTCCTGCTAATGGTGGGCGAAGGGGAAATGGCAAGGCCTCAGT
TGCAGCGCGAGCAAACATTCTCTTCTTCTTCGTATCTTTCCATTGAGAGACTAAGATCGGTTCTTTTCAGCAAACAGAGCATTGGTGATTGA

mRNA sequence

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Protein sequence

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MSWSVGRRNTNDGDVEVEVEMRVRVLSKISGDFVMFGRAKYRNKNYDSITLVISNEMESKEQVQTIRFKDAFLDHLWVVADRGEKVKVLEMGMSEFGDQLKVQKPIMGGG
GHGAGTTFKGVTIHPPKRWHTVTGKGLCAVMWFWVLYRAKQDGPVVLGWRHPWEGHGHGFLLMVGEGEMARPQLQREQTFSSSSYLSIERLRSVLFSKQSIGD

CSPI04G26760 (gene) of Cucumber (PI 183967) v1 genome