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CSPI04G26800 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G26800
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPentatricopeptide repeat-containing protein, mitochondrial
Genome locationChr4:23767496..23768093
RNA-Seq ExpressionCSPI04G26800
SyntenyCSPI04G26800
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048071.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.7e-4089Show/hide
Query:  ARGFCDLSNPDSDSEIECEKSEEDDNREC----DSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH
        ARG+CDL+N DSDSEIECEKSE+DD REC    DSTEV+RVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFK+ARKPAFRFFCWAAQKPGFAH
Subjt:  ARGFCDLSNPDSDSEIECEKSEEDDNREC----DSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH

XP_004144748.1 pentatricopeptide repeat-containing protein At3g62470, mitochondrial [Cucumis sativus]7.1e-4798.96Show/hide
Query:  ARGFCDLSNPDSDSEIECEKSEEDDNRECDSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH
        ARGFCDLSNPDSDSEIECEKSEE+DNRECDSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH
Subjt:  ARGFCDLSNPDSDSEIECEKSEEDDNRECDSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH

XP_008453445.1 PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucumis melo]1.1e-3987Show/hide
Query:  ARGFCDLSNPDSDSEIECEKSEEDDNREC----DSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH
        ARG+CDL+N DSDSEIECEKSE+DD REC    DSTEV+RVCKVIDELFALDRNMEAVLDECGV+L+HDLVLEVLARFK+ARKPAFRFFCWAAQKPGFAH
Subjt:  ARGFCDLSNPDSDSEIECEKSEEDDNREC----DSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH

XP_022156436.1 pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Momordica charantia]4.8e-3581.73Show/hide
Query:  ARGFCDLSNPD----SDSEIECEKSEEDDNREC----DSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKP
        ARGFC L+N D    SDSEIEC KSE+DD REC    DSTEV+RVCKVIDELFALDRNMEAVLDE   KLSHDLVLEVL RFKQARKPAFRFFCWAAQKP
Subjt:  ARGFCDLSNPD----SDSEIECEKSEEDDNREC----DSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKP

Query:  GFAH
        GFAH
Subjt:  GFAH

XP_038890736.1 pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Benincasa hispida]3.9e-3782.69Show/hide
Query:  ARGFCDLSN----PDSDSEIECEKSEEDDNREC----DSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKP
        ARGFCDL+N     D DSEIEC KS EDD REC    DSTEV+RVCKVIDELFALDRNMEAVLDECG+KLSHDLVLE+LAR+KQARKPAFRFFCWAAQKP
Subjt:  ARGFCDLSN----PDSDSEIECEKSEEDDNREC----DSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKP

Query:  GFAH
        GFAH
Subjt:  GFAH

TrEMBL top hitse value%identityAlignment
A0A0A0LK05 Uncharacterized protein3.4e-4798.96Show/hide
Query:  ARGFCDLSNPDSDSEIECEKSEEDDNRECDSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH
        ARGFCDLSNPDSDSEIECEKSEE+DNRECDSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH
Subjt:  ARGFCDLSNPDSDSEIECEKSEEDDNRECDSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH

A0A1S3BWC0 pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like5.3e-4087Show/hide
Query:  ARGFCDLSNPDSDSEIECEKSEEDDNREC----DSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH
        ARG+CDL+N DSDSEIECEKSE+DD REC    DSTEV+RVCKVIDELFALDRNMEAVLDECGV+L+HDLVLEVLARFK+ARKPAFRFFCWAAQKPGFAH
Subjt:  ARGFCDLSNPDSDSEIECEKSEEDDNREC----DSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH

A0A5D3BDC8 Pentatricopeptide repeat-containing protein8.2e-4189Show/hide
Query:  ARGFCDLSNPDSDSEIECEKSEEDDNREC----DSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH
        ARG+CDL+N DSDSEIECEKSE+DD REC    DSTEV+RVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFK+ARKPAFRFFCWAAQKPGFAH
Subjt:  ARGFCDLSNPDSDSEIECEKSEEDDNREC----DSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH

A0A6J1DUY7 pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like2.3e-3581.73Show/hide
Query:  ARGFCDLSNPD----SDSEIECEKSEEDDNREC----DSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKP
        ARGFC L+N D    SDSEIEC KSE+DD REC    DSTEV+RVCKVIDELFALDRNMEAVLDE   KLSHDLVLEVL RFKQARKPAFRFFCWAAQKP
Subjt:  ARGFCDLSNPD----SDSEIECEKSEEDDNREC----DSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKP

Query:  GFAH
        GFAH
Subjt:  GFAH

A0A6J1FBQ0 pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like4.1e-3279.8Show/hide
Query:  RGFCDLSNPDSDSEIECEKSEEDDNRECDS----TEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH
        RGFCD  N  SDSEIECE SE+DD RE DS     EV+RVCKV+DELFALDRNMEAVLDECGV LSHDLVL VL RFKQARKPAFRFFCWAA KPGF+H
Subjt:  RGFCDLSNPDSDSEIECEKSEEDDNRECDS----TEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH

SwissProt top hitse value%identityAlignment
Q3EAF8 Pentatricopeptide repeat-containing protein At3g62540, mitochondrial3.9e-2464.44Show/hide
Query:  DSDSEIECEKSEEDDNRECDST----EVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH
        D + E EC+  EE      +S+    EV RVCKVIDELFALDRNMEAVLDE  + LSHDL++EVL RF+ ARKPAFRFFCWAA++ GFAH
Subjt:  DSDSEIECEKSEEDDNRECDST----EVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH

Q9LEQ7 Pentatricopeptide repeat-containing protein At5g14820, mitochondrial3.9e-2464.44Show/hide
Query:  DSDSEIECEKSEEDDNRECDST----EVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH
        D + E EC+  EE      +S+    EV RVCKVIDELFALDRNMEAVLDE  + LSHDL++EVL RF+ ARKPAFRFFCWAA++ GFAH
Subjt:  DSDSEIECEKSEEDDNRECDST----EVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH

Q9LFQ4 Pentatricopeptide repeat-containing protein At5g15010, mitochondrial3.1e-0530.95Show/hide
Query:  DSDSEIECEKSEEDDNRECDSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGF
        +SD ++ C  S+     E  S +V ++ K++ +  +  + +   L+EC VK S++LV+E+L+R +   + AF FF WA ++ G+
Subjt:  DSDSEIECEKSEEDDNRECDSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGF

Q9LZP3 Pentatricopeptide repeat-containing protein At3g62470, mitochondrial3.9e-2464.44Show/hide
Query:  DSDSEIECEKSEEDDNRECDST----EVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH
        D + E EC+  EE      +S+    EV RVCKVIDELFALDRNMEAVLDE  + LSHDL++EVL RF+ ARKPAFRFFCWAA++ GFAH
Subjt:  DSDSEIECEKSEEDDNRECDST----EVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH

Arabidopsis top hitse value%identityAlignment
AT3G22670.1 Pentatricopeptide repeat (PPR) superfamily protein7.2e-0529.69Show/hide
Query:  EVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH
        ++++VC  +++      ++   L +C V ++  LVL+VL RF      A+ FF WA  + G+ H
Subjt:  EVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH

AT3G62470.1 Pentatricopeptide repeat (PPR) superfamily protein2.8e-2564.44Show/hide
Query:  DSDSEIECEKSEEDDNRECDST----EVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH
        D + E EC+  EE      +S+    EV RVCKVIDELFALDRNMEAVLDE  + LSHDL++EVL RF+ ARKPAFRFFCWAA++ GFAH
Subjt:  DSDSEIECEKSEEDDNRECDST----EVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH

AT3G62540.1 Pentatricopeptide repeat (PPR) superfamily protein2.8e-2564.44Show/hide
Query:  DSDSEIECEKSEEDDNRECDST----EVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH
        D + E EC+  EE      +S+    EV RVCKVIDELFALDRNMEAVLDE  + LSHDL++EVL RF+ ARKPAFRFFCWAA++ GFAH
Subjt:  DSDSEIECEKSEEDDNRECDST----EVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH

AT5G14820.1 Pentatricopeptide repeat (PPR) superfamily protein2.8e-2564.44Show/hide
Query:  DSDSEIECEKSEEDDNRECDST----EVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH
        D + E EC+  EE      +S+    EV RVCKVIDELFALDRNMEAVLDE  + LSHDL++EVL RF+ ARKPAFRFFCWAA++ GFAH
Subjt:  DSDSEIECEKSEEDDNRECDST----EVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH

AT5G15010.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.2e-0630.95Show/hide
Query:  DSDSEIECEKSEEDDNRECDSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGF
        +SD ++ C  S+     E  S +V ++ K++ +  +  + +   L+EC VK S++LV+E+L+R +   + AF FF WA ++ G+
Subjt:  DSDSEIECEKSEEDDNRECDSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCGAAAATTGCACACATTTTATGCTAGAGGCTTTTGCGATTTGAGTAATCCTGATTCTGATTCTGAAATTGAATGTGAGAAGAGTGAGGAGGATGATAATCGTGA
GTGTGATTCGACTGAAGTCAATCGCGTATGCAAGGTGATCGACGAATTGTTTGCATTAGATAGGAACATGGAGGCAGTTCTTGATGAGTGTGGGGTAAAATTGTCTCATG
ATCTGGTTTTGGAGGTCTTAGCAAGGTTCAAACAAGCTCGAAAACCGGCATTTCGATTCTTCTGTTGGGCTGCTCAGAAGCCAGGATTTGCCCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATCGAAAATTGCACACATTTTATGCTAGAGGCTTTTGCGATTTGAGTAATCCTGATTCTGATTCTGAAATTGAATGTGAGAAGAGTGAGGAGGATGATAATCGTGA
GTGTGATTCGACTGAAGTCAATCGCGTATGCAAGGTGATCGACGAATTGTTTGCATTAGATAGGAACATGGAGGCAGTTCTTGATGAGTGTGGGGTAAAATTGTCTCATG
ATCTGGTTTTGGAGGTCTTAGCAAGGTTCAAACAAGCTCGAAAACCGGCATTTCGATTCTTCTGTTGGGCTGCTCAGAAGCCAGGATTTGCCCATTAA
Protein sequenceShow/hide protein sequence
MNRKLHTFYARGFCDLSNPDSDSEIECEKSEEDDNRECDSTEVNRVCKVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAH