; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G27320 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G27320
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionsplicing factor U2af small subunit B-like
Genome locationChr4:24022258..24024226
RNA-Seq ExpressionCSPI04G27320
SyntenyCSPI04G27320
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0089701 - U2AF (cellular component)
GO:0030628 - pre-mRNA 3'-splice site binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR000571 - Zinc finger, CCCH-type
IPR003954 - RNA recognition motif domain, eukaryote
IPR009145 - U2 auxiliary factor small subunit
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004145565.1 splicing factor U2af small subunit B [Cucumis sativus]6.0e-154100Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS

Query:  LSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ
        LSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ
Subjt:  LSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ

XP_008453027.1 PREDICTED: splicing factor U2af small subunit B-like [Cucumis melo]1.1e-15097.83Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR SRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS

Query:  LSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ
        LSPRNRKE+DRRERDYR+R+YRGNGRSKERHDRDGGRRR GSPRRSRSRSPVI REGSEERRARIEQWNREREEKQ
Subjt:  LSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ

XP_022142994.1 splicing factor U2af small subunit B-like [Momordica charantia]6.2e-14394.6Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR SRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS

Query:  LSPRNRKEHDRRERDYRDRDYRGNGRSKE---RHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEK
        LSPRNRK++DRRERD+RDRD+RGNGRSKE   R+DRDGGRRR GSPRRSRS     VREGSEERRARIEQWNREREEK
Subjt:  LSPRNRKEHDRRERDYRDRDYRGNGRSKE---RHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEK

XP_022941119.1 splicing factor U2af small subunit B-like [Cucurbita moschata]9.0e-14293.93Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRASRSRSR
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG R+RGYR SRSRSR
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRASRSRSR

Query:  SLSPRNRKEHDRRERDYRDRDYRGNGRSKE---RHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ
        SLSPRNRK++DRRERDYRDRD+RGNGRSKE   R+DRDGGRRR GSPRRSRS     VREGSEERRARIEQWNREREEKQ
Subjt:  SLSPRNRKEHDRRERDYRDRDYRGNGRSKE---RHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ

XP_038900064.1 splicing factor U2af small subunit B-like [Benincasa hispida]5.8e-14997.83Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR SRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS

Query:  LSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ
        LSPRNRKEHDRRERDYRDRDYRGNGRSKER DRDGGRRR GSPR  RSRSPV VREGSEERRARIEQWNREREEKQ
Subjt:  LSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ

TrEMBL top hitse value%identityAlignment
A0A0A0L4P8 Uncharacterized protein2.9e-154100Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS

Query:  LSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ
        LSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ
Subjt:  LSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ

A0A1S3BUN6 splicing factor U2af small subunit B-like5.1e-15197.83Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR SRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS

Query:  LSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ
        LSPRNRKE+DRRERDYR+R+YRGNGRSKERHDRDGGRRR GSPRRSRSRSPVI REGSEERRARIEQWNREREEKQ
Subjt:  LSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ

A0A5A7VFL1 Splicing factor U2af small subunit B-like5.1e-15197.83Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR SRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS

Query:  LSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ
        LSPRNRKE+DRRERDYR+R+YRGNGRSKERHDRDGGRRR GSPRRSRSRSPVI REGSEERRARIEQWNREREEKQ
Subjt:  LSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ

A0A6J1CN17 splicing factor U2af small subunit B-like3.0e-14394.6Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYR SRSRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS

Query:  LSPRNRKEHDRRERDYRDRDYRGNGRSKE---RHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEK
        LSPRNRK++DRRERD+RDRD+RGNGRSKE   R+DRDGGRRR GSPRRSRS     VREGSEERRARIEQWNREREEK
Subjt:  LSPRNRKEHDRRERDYRDRDYRGNGRSKE---RHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEK

A0A6J1IV82 splicing factor U2af small subunit B-like4.3e-14293.93Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRASRSRSR
        CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG R+RGYR SRSRSR
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFG-RYRGYRASRSRSR

Query:  SLSPRNRKEHDRRERDYRDRDYRGNGRSKE---RHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ
        SLSPRNRK++DRRERDYRDRD+RGNGRSKE   R+DRDGGRRR GSPRRSRS     VREGSEERRARIEQWNREREEKQ
Subjt:  SLSPRNRKEHDRRERDYRDRDYRGNGRSKE---RHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ

SwissProt top hitse value%identityAlignment
A1A4K8 Splicing factor U2AF 35 kDa subunit3.7e-6652.8Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEEL-GKFGEIESLN
        MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S T+ L N+Y+ P   +   D     +   ++QEH+++F+E+++ E+  K+GE+E +N
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEEL-GKFGEIESLN

Query:  VCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSR
        VCDNL DH++GNVYV+FR E+ A  A+  L  R+++G+PI A+ SPVTDFREA CRQYE   C RGG+CNFMH+K I ++LRR+L+GR R    SRSRSR
Subjt:  VCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSR

Query:  SLSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQGSPRRSRSR
                  +RR R  RDR   G G         GG  R+   RRSR R
Subjt:  SLSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRRQGSPRRSRSR

Q6AUG0 Splicing factor U2af small subunit B3.4e-11272.4Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPT+SPT++L+NMYQRPDMITPGVDAQGQPIDP K+QEHFEDFYEDIYEEL KFGE+E+LNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS
        CDNLADHMIGNVYVQFREE+QA AA  ALQGRFYSGRPII ++SPVTDFREATCRQ+EEN+CNRGGYCNFMHVK IG++LRRKL+G     R S  RSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS

Query:  LSPRNR-----KEHDRRERD--------------------YRDRD-YRGNG-----RSKERHDR--DGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQ
         SPR+R     ++  RRERD                    YR  D YRG G         R+DR  DGGRRR GSP R R+RSP  VRE SEERRA+IEQ
Subjt:  LSPRNR-----KEHDRRERD--------------------YRDRD-YRGNG-----RSKERHDR--DGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQ

Query:  WNREREEK
        WNREREEK
Subjt:  WNREREEK

Q9FMY5 Splicing factor U2af small subunit B6.5e-12784.1Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRG--YRASRSRS
        CDNLADHMIGNVYV F+EED AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++LRRKLFGRYR    R SRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRG--YRASRSRS

Query:  RSLSPRNRKEHDR-RER-DYRDRDYRGNGR----SKERHDRD-GGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREE
        RS+SPR ++EH R RER D RDRD  GNG+      ERHDRD GGRRR GSP+  RSRSP  VREGSEERRARIEQWNRER+E
Subjt:  RSLSPRNRKEHDR-RER-DYRDRDYRGNGR----SKERHDRD-GGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREE

Q9S709 Splicing factor U2af small subunit A1.0e-12480.95Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---ASRS
        CDNLADHMIGNVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++LRRKLFGRY R YR    SRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---ASRS

Query:  RSRSLSPRNRKEHDR-----RERDYRDRD---YR-GNGR----SKERHDRDGGR-RRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ
        RSRS+SPRN++++DR     RE  +RDRD   YR G+G+      ER +RDG R RRQ SP+  R  SP   REGSEERRARIEQWNREREEK+
Subjt:  RSRSLSPRNRKEHDR-----RERDYRDRD---YR-GNGR----SKERHDRDGGR-RRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ

Q9ZQW8 Splicing factor U2af small subunit A8.0e-10972.54Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHN+P++SPTLLLSNMY RPDMITPG+DAQG PIDP KIQ  FEDFYEDI+EEL K+GEIESL+V
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS
        CDN ADHMIGNVYVQFREEDQAA ALQAL GR+YSGRPII +FSPV+DFREATCRQYEEN+CNRGGYCNFMHVK IG+DLR++LFG     R S S  RS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRS

Query:  LSP---RNRKEHDR----RERDYRD------RDY--RGNGRSKERH----DRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ
         SP     R+++DR    R RD+ D       DY   G+ RS ERH    D DG RRR     RSR+RSP  VR+GSEERRA+IEQWNRERE  Q
Subjt:  LSP---RNRKEHDR----RERDYRD------RDY--RGNGRSKERH----DRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ

Arabidopsis top hitse value%identityAlignment
AT1G10320.1 Zinc finger C-x8-C-x5-C-x3-H type family protein3.1e-3134.6Show/hide
Query:  FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHM
        FGTE+D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P  IT   D +G      + +  +E+FYED++ E  K+GE+ +  VC N + H+
Subjt:  FGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHM

Query:  IGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH-VKMIGKDLR----------------RKLFG--
         GNVYV +R  + A  A Q++ GR+++G+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H  +  G D                    LFG  
Subjt:  IGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN---NCNRGGYCNFMH-VKMIGKDLR----------------RKLFG--

Query:  --RYRGYRASRSRSRSLSPRNRKEHDRRERDYRDRDY
          ++  + +S S + S+S  +   H +  R  R RD+
Subjt:  --RYRGYRASRSRSRSLSPRNRKEHDRRERDYRDRDY

AT1G27650.1 U2 snRNP auxiliary factor small subunit, putative7.3e-12680.95Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---ASRS
        CDNLADHMIGNVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVK++ ++LRRKLFGRY R YR    SRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---ASRS

Query:  RSRSLSPRNRKEHDR-----RERDYRDRD---YR-GNGR----SKERHDRDGGR-RRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ
        RSRS+SPRN++++DR     RE  +RDRD   YR G+G+      ER +RDG R RRQ SP+  R  SP   REGSEERRARIEQWNREREEK+
Subjt:  RSRSLSPRNRKEHDR-----RERDYRDRD---YR-GNGR----SKERHDRDGGR-RRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ

AT1G27650.2 U2 snRNP auxiliary factor small subunit, putative3.7e-9377.05Show/hide
Query:  MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFR
        MYQRPDMITPGVDAQGQP+DPRKIQEHFEDF+ED++EELGKFGEIESLN+CDNLADHMIGNVYVQF+EEDQAAAALQALQGRFYSGRPIIADFSPVTDFR
Subjt:  MYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFR

Query:  EATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---ASRSRSRSLSPRNRKEHDR-----RERDYRDRD---YR-GNGR----SKERHDR
        EATCRQYEENNCNRGGYCNFMHVK++ ++LRRKLFGRY R YR    SRSRSRS+SPRN++++DR     RE  +RDRD   YR G+G+      ER +R
Subjt:  EATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRY-RGYR---ASRSRSRSLSPRNRKEHDR-----RERDYRDRD---YR-GNGR----SKERHDR

Query:  DGGR-RRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ
        DG R RRQ SP+  R  SP   REGSEERRARIEQWNREREEK+
Subjt:  DGGR-RRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ

AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein4.6e-12884.1Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRG--YRASRSRS
        CDNLADHMIGNVYV F+EED AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++LRRKLFGRYR    R SRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRG--YRASRSRS

Query:  RSLSPRNRKEHDR-RER-DYRDRDYRGNGR----SKERHDRD-GGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREE
        RS+SPR ++EH R RER D RDRD  GNG+      ERHDRD GGRRR GSP+  RSRSP  VREGSEERRARIEQWNRER+E
Subjt:  RSLSPRNRKEHDR-RER-DYRDRDYRGNGR----SKERHDRD-GGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREE

AT5G42820.2 Zinc finger C-x8-C-x5-C-x3-H type family protein4.6e-12884.1Show/hide
Query:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV
        MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD QGQP+DP KIQ+HFEDFYEDI+EEL KFGE+ESLNV
Subjt:  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNV

Query:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRG--YRASRSRS
        CDNLADHMIGNVYV F+EED AAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEEN+CNRGGYCNFMHVK I ++LRRKLFGRYR    R SRSRS
Subjt:  CDNLADHMIGNVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRG--YRASRSRS

Query:  RSLSPRNRKEHDR-RER-DYRDRDYRGNGR----SKERHDRD-GGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREE
        RS+SPR ++EH R RER D RDRD  GNG+      ERHDRD GGRRR GSP+  RSRSP  VREGSEERRARIEQWNRER+E
Subjt:  RSLSPRNRKEHDR-RER-DYRDRDYRGNGR----SKERHDRD-GGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGCCATGGAGATCGCTGCTCTCGCCTCCA
CAACCGCCCTACTATTTCCCCTACTCTTCTCCTATCCAACATGTACCAGCGCCCCGACATGATCACCCCGGGCGTTGATGCTCAGGGCCAGCCCATAGATCCCCGAAAGA
TTCAGGAACACTTCGAAGATTTCTACGAAGACATTTATGAGGAACTTGGCAAGTTCGGTGAGATCGAGAGCCTTAATGTCTGTGATAATCTCGCCGACCACATGATTGGA
AATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCCGCCGCACTCCAAGCCTTGCAAGGGCGGTTTTACTCAGGTCGACCCATTATCGCAGATTTTTCTCCCGTAAC
TGATTTCCGCGAAGCCACGTGCCGCCAGTACGAGGAGAATAATTGCAACCGAGGGGGATATTGCAATTTTATGCACGTAAAGATGATTGGGAAGGATTTGAGAAGGAAGC
TGTTCGGTAGGTACCGGGGATATAGGGCGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAAGAGCACGATAGGCGTGAAAGGGATTACAGAGACCGTGAC
TATCGCGGAAACGGACGGAGCAAGGAGCGTCATGATAGGGATGGGGGAAGGAGAAGACAAGGTAGCCCCAGACGAAGCCGAAGCCGAAGCCCTGTCATTGTGAGAGAAGG
TAGCGAAGAGCGACGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGA
mRNA sequenceShow/hide mRNA sequence
AAAGAAAATAACATGTCTGCTATGCGAGAACATAAGCAATACCTTTCCGGAGTCCTTGATTTACGAATTACGCATCTGGGATCCATTTCTCCAATTTAGGGTTTCTTTTC
TCCTGGGCTCCAATTGAGCTTTCGCTTCCGTTTTCCCTTTTCATTTTTAATTTCAATTCCACTTCTTCTTCATCCAATTCATTTCAATCAGGTCGACTATTGTTGCTGAA
ATCTCTCTCATCTGATCTCAAATGGCTGAACACTTGGCCTCAATATTTGGCACCGAGAAGGACCGTGTCAACTGCCCTTTCTATTTCAAGATCGGCGCCTGCCGCCATGG
AGATCGCTGCTCTCGCCTCCACAACCGCCCTACTATTTCCCCTACTCTTCTCCTATCCAACATGTACCAGCGCCCCGACATGATCACCCCGGGCGTTGATGCTCAGGGCC
AGCCCATAGATCCCCGAAAGATTCAGGAACACTTCGAAGATTTCTACGAAGACATTTATGAGGAACTTGGCAAGTTCGGTGAGATCGAGAGCCTTAATGTCTGTGATAAT
CTCGCCGACCACATGATTGGAAATGTCTACGTTCAGTTTAGGGAGGAGGACCAGGCTGCCGCCGCACTCCAAGCCTTGCAAGGGCGGTTTTACTCAGGTCGACCCATTAT
CGCAGATTTTTCTCCCGTAACTGATTTCCGCGAAGCCACGTGCCGCCAGTACGAGGAGAATAATTGCAACCGAGGGGGATATTGCAATTTTATGCACGTAAAGATGATTG
GGAAGGATTTGAGAAGGAAGCTGTTCGGTAGGTACCGGGGATATAGGGCGAGCCGGAGCAGGAGTAGAAGTTTGAGTCCGCGGAACCGGAAAGAGCACGATAGGCGTGAA
AGGGATTACAGAGACCGTGACTATCGCGGAAACGGACGGAGCAAGGAGCGTCATGATAGGGATGGGGGAAGGAGAAGACAAGGTAGCCCCAGACGAAGCCGAAGCCGAAG
CCCTGTCATTGTGAGAGAAGGTAGCGAAGAGCGACGTGCCCGTATTGAACAGTGGAACCGAGAAAGGGAGGAGAAGCAGTGACGTCTTCGTATTTTTTCTTTCTTTCTAT
TTTGGTAATTGTTCTGCGCTCTCTCTGTCATTTAATTATGTACCTTACCCTTACTTACACCACATAATTCTGCCTGAATAGGAAGTAGAAATCTTTTCTAGACAAAGCCG
TGGGTGTGATATCAAGTAGAGTAGCCTTTTTGGTTAACTTTCTAGTTGATATTGTCGGATATGATCTCTTAACTATTTCTATCTGCACTTCATCATCCATATGCTTTAAC
TTGTGCCTCATCTTACCCATTTAAAACCCATCATTTCCTATCCACTCTCCTGCTTGAGTTTCTGACCCAGGCAACAACAAGATGGGAAACTCATTGAGTGTGCTATGCAA
ATTGATGATTGTTGAATAAGGCATCTATCTGCGTATGCCCTTGTTACTTCTATATCTAACTATTCTATTTGTACAACTACGCTGACTTGAGGCATTGTGTTAGTTACTAT
AGTGAATGAGTTTTAATAGTTTTTGTTTGGTGTGCAAACTATCTTAGGATAGTCATTATTATTCATGTTTGAGTTGCAAGATCATACACTGAAGCAAAGAGGGGGTTTGA
TTATAATAGTAATGTTATATTTAATTGTAGATTATAATAGTTAAAAATACCTATTACTGTAATTGGATCACTAAACATGGGTGGGTTGTAATAGCCCACCCATGAAGTTC
AAGTTAGTAAGGTTGTACATGATAAATTGATTGGAGTATAGTGGAATTGAACAAATTATGGCCTTGGGTTTTCAAAGTACTAAATAACAAATTAAGGTGAGCATAACTAC
TCATCCGTTTGTTGTACTAAAAAAGAAATGGAGGAAACAGAACAGCGATGGCTTTGTGAATGAGGGAGAGGAAGATTGTTGTACTAAAAAAGAAATGGA
Protein sequenceShow/hide protein sequence
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPIDPRKIQEHFEDFYEDIYEELGKFGEIESLNVCDNLADHMIG
NVYVQFREEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKDLRRKLFGRYRGYRASRSRSRSLSPRNRKEHDRRERDYRDRD
YRGNGRSKERHDRDGGRRRQGSPRRSRSRSPVIVREGSEERRARIEQWNREREEKQ