; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI04G27340 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G27340
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationChr4:24030560..24031112
RNA-Seq ExpressionCSPI04G27340
SyntenyCSPI04G27340
Gene Ontology termsGO:0009765 - photosynthesis, light harvesting (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649969.1 hypothetical protein Csa_012286 [Cucumis sativus]4.6e-50100Show/hide
Query:  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKF
        MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKF
Subjt:  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKF

Query:  KALAEEARKD
        KALAEEARKD
Subjt:  KALAEEARKD
XP_004145567.1 chlorophyll a-b binding protein 7, chloroplastic isoform X1 [Cucumis sativus]4.6e-50100Show/hide
Query:  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKF
        MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKF
Subjt:  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKF

Query:  KALAEEARKD
        KALAEEARKD
Subjt:  KALAEEARKD
XP_008453032.2 PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo]1.0e-4991.6Show/hide
Query:  MMSPSPEIAMALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKN
        M+ PSPEI MAL+QPHTPASSISSSSAS +GTYLQQ RPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSA+PFTAVKAIANSPLG SLQRQLEKKK 
Subjt:  MMSPSPEIAMALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKN

Query:  SAVANSSKFKALAEEARKD
        SAVANSSKFKALAEEARKD
Subjt:  SAVANSSKFKALAEEARKD
XP_011654292.1 chlorophyll a-b binding protein 7, chloroplastic isoform X2 [Cucumis sativus]4.6e-50100Show/hide
Query:  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKF
        MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKF
Subjt:  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKF

Query:  KALAEEARKD
        KALAEEARKD
Subjt:  KALAEEARKD
XP_011654293.1 chlorophyll a-b binding protein 7, chloroplastic isoform X3 [Cucumis sativus]4.6e-50100Show/hide
Query:  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKF
        MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKF
Subjt:  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKF

Query:  KALAEEARKD
        KALAEEARKD
Subjt:  KALAEEARKD
TrEMBL top hitse value%identityAlignment
A0A0A0L3G2 Chlorophyll a-b binding protein, chloroplastic7.6e-51100Show/hide
Query:  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKF
        MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKF
Subjt:  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKF

Query:  KALAEEARKDR
        KALAEEARKDR
Subjt:  KALAEEARKDR
A0A1S3BUP0 Chlorophyll a-b binding protein, chloroplastic5.0e-5091.6Show/hide
Query:  MMSPSPEIAMALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKN
        M+ PSPEI MAL+QPHTPASSISSSSAS +GTYLQQ RPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSA+PFTAVKAIANSPLG SLQRQLEKKK 
Subjt:  MMSPSPEIAMALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKN

Query:  SAVANSSKFKALAEEARKD
        SAVANSSKFKALAEEARKD
Subjt:  SAVANSSKFKALAEEARKD
A0A1S3BVA0 Chlorophyll a-b binding protein, chloroplastic5.0e-5091.6Show/hide
Query:  MMSPSPEIAMALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKN
        M+ PSPEI MAL+QPHTPASSISSSSAS +GTYLQQ RPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSA+PFTAVKAIANSPLG SLQRQLEKKK 
Subjt:  MMSPSPEIAMALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKN

Query:  SAVANSSKFKALAEEARKD
        SAVANSSKFKALAEEARKD
Subjt:  SAVANSSKFKALAEEARKD
A0A1S3BWE1 Chlorophyll a-b binding protein, chloroplastic5.0e-5091.6Show/hide
Query:  MMSPSPEIAMALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKN
        M+ PSPEI MAL+QPHTPASSISSSSAS +GTYLQQ RPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSA+PFTAVKAIANSPLG SLQRQLEKKK 
Subjt:  MMSPSPEIAMALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKN

Query:  SAVANSSKFKALAEEARKD
        SAVANSSKFKALAEEARKD
Subjt:  SAVANSSKFKALAEEARKD
A0A5D3D8N7 Chlorophyll a-b binding protein of LHCII type 1 isoform X25.1e-4793.64Show/hide
Query:  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKF
        MAL+QPHTPASSISSSSAS +GTYLQQ RPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSA+PFTAVKAIANSPLG SLQRQLEKKK SAVANSSKF
Subjt:  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKF

Query:  KALAEEARKD
        KALAEEARKD
Subjt:  KALAEEARKD
SwissProt top hitse value%identityAlignment
Q9C9K1 Chlorophyll a-b binding protein 7, chloroplastic1.3e-1854.95Show/hide
Query:  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSIS-HRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSK
        MAL Q     SS+SSS +S+         P       R+  +++  RS CRASWQELAGVL+FSAIPFTAVKAIANS +G SL+R+LE+KK  AV NSS+
Subjt:  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSIS-HRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSK

Query:  FKALAEEARKD
        FK+ A+EAR D
Subjt:  FKALAEEARKD
Arabidopsis top hitse value%identityAlignment
AT1G76570.1 Chlorophyll A-B binding family protein9.0e-2054.95Show/hide
Query:  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSIS-HRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSK
        MAL Q     SS+SSS +S+         P       R+  +++  RS CRASWQELAGVL+FSAIPFTAVKAIANS +G SL+R+LE+KK  AV NSS+
Subjt:  MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSIS-HRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSK

Query:  FKALAEEARKD
        FK+ A+EAR D
Subjt:  FKALAEEARKD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAGTCCGTCACCAGAGATTGCAATGGCGCTAGTTCAGCCACACACTCCAGCTTCTTCAATTTCATCTTCATCCGCTTCATTGTTCGGAACTTATCTTCAACAATT
CCGTCCGCTCACCACAACCCTTAATCTTCGAAGCAACCACTCTATCTCTCATCGTTCCACCTGCAGAGCTTCCTGGCAGGAGCTTGCAGGTGTTCTAATATTCTCTGCAA
TTCCTTTCACGGCGGTTAAAGCCATTGCTAATAGCCCACTTGGAGGGTCGCTCCAGAGACAATTGGAAAAGAAGAAAAATTCTGCCGTAGCCAACTCTTCCAAGTTCAAG
GCTCTTGCTGAGGAGGCTAGAAAAGATAGGTAA
mRNA sequenceShow/hide mRNA sequence
GCGTAATTGTTCCAATAATCTATGGTTTTTGCGATTTGGCAAAGGAAAGAAAAGGAAAGAAAAAAAAAAAAAAAGAGAAAATCTTAAAACTGGTATTTGATGAGTTTGGC
TCAATGATGAGTCCGTCACCAGAGATTGCAATGGCGCTAGTTCAGCCACACACTCCAGCTTCTTCAATTTCATCTTCATCCGCTTCATTGTTCGGAACTTATCTTCAACA
ATTCCGTCCGCTCACCACAACCCTTAATCTTCGAAGCAACCACTCTATCTCTCATCGTTCCACCTGCAGAGCTTCCTGGCAGGAGCTTGCAGGTGTTCTAATATTCTCTG
CAATTCCTTTCACGGCGGTTAAAGCCATTGCTAATAGCCCACTTGGAGGGTCGCTCCAGAGACAATTGGAAAAGAAGAAAAATTCTGCCGTAGCCAACTCTTCCAAGTTC
AAGGCTCTTGCTGAGGAGGCTAGAAAAGATAGGTAATCGG
Protein sequenceShow/hide protein sequence
MMSPSPEIAMALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKKNSAVANSSKFK
ALAEEARKDR