CuGenDBv2

Gene ID	CSPI04G27530
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3/gypsy retrotransposon protein
Genome location	Chr4:24154970..24155691
RNA-Seq Expression	CSPI04G27530
Synteny	CSPI04G27530
Gene Ontology terms	GO:0005975 - carbohydrate metabolic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0030246 - carbohydrate binding (molecular function) GO:0047938 - glucose-6-phosphate 1-epimerase activity (molecular function)
InterPro domains	IPR021109 - Aspartic peptidase domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039975.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

7.2e-81

69.82

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Query:  ENQGNTIFPIRTVTLRTTA-GEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVVKED-EEYEIVEEAEWDETELNCVEINPE
        +N+ NT+FPIRT+TLR++   E ++EG  KRLPDAEFQARKEKGLCFRCNEKY   HRC+ +EQRELRM+VV E  EEYEIVE+ E +E EL C+EIN  
Subjt:  ENQGNTIFPIRTVTLRTTA-GEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVVKED-EEYEIVEEAEWDETELNCVEINPE

Query:  DQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLEL
           +VELSINSVVGL +PGTMKVRGK+   EV+ILIDCGATHNF+S+K+V++LSLP K TSHYGVILGSGAAV+GKG+CE +E++L+ WK+  +FLPLEL
Subjt:  DQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLEL

Query:  GGVDGVLGMQWLYSLGVTEVDW
        GGVD +LGMQWLYSLGVT VDW
Subjt:  GGVDGVLGMQWLYSLGVTEVDW

KAA0040664.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.2e-81

69.06

Show/hide

Query:  ENQGNTIFPIRTVTLRTTA-GEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVVKED-EEYEIV-EEAEWDETELNCVEINP
        +N+ NT+FPIRT+TLR++   E ++EG  KRLPDAEFQARKEKGLCFRCNEKY   H+C+ +EQRELRM+VV E  EEYEIV EE E  E E  C+E+N 
Subjt:  ENQGNTIFPIRTVTLRTTA-GEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVVKED-EEYEIV-EEAEWDETELNCVEINP

Query:  EDQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLE
            +VELSINSVVGL +PGTMKVRGK+   EV+ILIDCGATHNF+S+K+V++LSLP K TSHYGVILGSGAAV+GKG+CE +E++L+GWK+  +FLPLE
Subjt:  EDQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLE

Query:  LGGVDGVLGMQWLYSLGVTEVDW
        LGGVD +LGMQWLYSLGVT VDW
Subjt:  LGGVDGVLGMQWLYSLGVTEVDW

KAA0044875.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

7.2e-81

69.37

Show/hide

Query:  ENQGNTIFPIRTVTLRTTA-GEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVV-KEDEEYEIVEEAEWDETELNCVEINPE
        +N+ NT+FPIRT+TLR++   E ++EG  KRLPDAEFQARKEKGLCFRCNEKY   H+CK REQRELRM+VV  E +EYEIVEE E + TELNC+E+  +
Subjt:  ENQGNTIFPIRTVTLRTTA-GEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVV-KEDEEYEIVEEAEWDETELNCVEINPE

Query:  DQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLEL
           +VELSINSVVGL +PGTMKVRGK+   EV+ILIDCGATHNF+S+K+V++LSL  K TSHYGVILGSGAAV+GKG+CE +E+++ GWK+  +FLPLEL
Subjt:  DQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLEL

Query:  GGVDGVLGMQWLYSLGVTEVDW
        GGVD +LGMQWLYSLGVT VDW
Subjt:  GGVDGVLGMQWLYSLGVTEVDW

TYK18846.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.2e-80

69.37

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Query:  ENQGNTIFPIRTVTLRTTA-GEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVVKED-EEYEIVEEAEWDETELNCVEINPE
        +N+ NT+FPIRT+TLR++   E ++EG  KRLPDAEFQARKEKGLCFRCNEKY   H+C+ +EQRELRM+VV E  EEYEIVE+ E +E EL C+EIN  
Subjt:  ENQGNTIFPIRTVTLRTTA-GEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVVKED-EEYEIVEEAEWDETELNCVEINPE

Query:  DQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLEL
           +VELSINSVVGL +PGTMKVRGK+   EV+ILIDCGATHNF+S+K+V++LSLP K TSHYGVILGSGAAV+GKG+CE +E++L+ WK+  +FLPLEL
Subjt:  DQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLEL

Query:  GGVDGVLGMQWLYSLGVTEVDW
        GGVD +LGMQWLYSLGVT VDW
Subjt:  GGVDGVLGMQWLYSLGVTEVDW

XP_031745972.1 uncharacterized protein LOC116406393 [Cucumis sativus]

1.0e-119

96.88

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Query:  MNNSENQGNTIFPIRTVTLRTTAGEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVVKEDEEYEIVEEAEWDETELNCVEIN
        MN+SE++GNTIFPIRTVTLRT  GEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVVKEDEEYEIVEEAEWDETELNCVEIN
Subjt:  MNNSENQGNTIFPIRTVTLRTTAGEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVVKEDEEYEIVEEAEWDETELNCVEIN

Query:  PEDQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPL
        PEDQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGS AAVKGKGICEGIELELEGWKVEANFLPL
Subjt:  PEDQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPL

Query:  ELGGVDGVLGMQWLYSLGVTEVDW
        ELGGVDGVL MQWLYSLGVTEVDW
Subjt:  ELGGVDGVLGMQWLYSLGVTEVDW

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TB29 Ty3/gypsy retrotransposon protein

1.6e-81

69.06

Show/hide

Query:  ENQGNTIFPIRTVTLRTTA-GEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVVKED-EEYEIV-EEAEWDETELNCVEINP
        +N+ NT+FPIRT+TLR++   E ++EG  KRLPDAEFQARKEKGLCFRCNEKY   H+C+ +EQRELRM+VV E  EEYEIV EE E  E E  C+E+N 
Subjt:  ENQGNTIFPIRTVTLRTTA-GEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVVKED-EEYEIV-EEAEWDETELNCVEINP

Query:  EDQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLE
            +VELSINSVVGL +PGTMKVRGK+   EV+ILIDCGATHNF+S+K+V++LSLP K TSHYGVILGSGAAV+GKG+CE +E++L+GWK+  +FLPLE
Subjt:  EDQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLE

Query:  LGGVDGVLGMQWLYSLGVTEVDW
        LGGVD +LGMQWLYSLGVT VDW
Subjt:  LGGVDGVLGMQWLYSLGVTEVDW

A0A5A7TET8 Ty3/gypsy retrotransposon protein

3.5e-81

69.82

Show/hide

Query:  ENQGNTIFPIRTVTLRTTA-GEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVVKED-EEYEIVEEAEWDETELNCVEINPE
        +N+ NT+FPIRT+TLR++   E ++EG  KRLPDAEFQARKEKGLCFRCNEKY   HRC+ +EQRELRM+VV E  EEYEIVE+ E +E EL C+EIN  
Subjt:  ENQGNTIFPIRTVTLRTTA-GEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVVKED-EEYEIVEEAEWDETELNCVEINPE

Query:  DQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLEL
           +VELSINSVVGL +PGTMKVRGK+   EV+ILIDCGATHNF+S+K+V++LSLP K TSHYGVILGSGAAV+GKG+CE +E++L+ WK+  +FLPLEL
Subjt:  DQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLEL

Query:  GGVDGVLGMQWLYSLGVTEVDW
        GGVD +LGMQWLYSLGVT VDW
Subjt:  GGVDGVLGMQWLYSLGVTEVDW

A0A5A7TU09 Glucose-6-phosphate 1-epimerase

3.5e-81

69.37

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Query:  ENQGNTIFPIRTVTLRTTA-GEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVV-KEDEEYEIVEEAEWDETELNCVEINPE
        +N+ NT+FPIRT+TLR++   E ++EG  KRLPDAEFQARKEKGLCFRCNEKY   H+CK REQRELRM+VV  E +EYEIVEE E + TELNC+E+  +
Subjt:  ENQGNTIFPIRTVTLRTTA-GEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVV-KEDEEYEIVEEAEWDETELNCVEINPE

Query:  DQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLEL
           +VELSINSVVGL +PGTMKVRGK+   EV+ILIDCGATHNF+S+K+V++LSL  K TSHYGVILGSGAAV+GKG+CE +E+++ GWK+  +FLPLEL
Subjt:  DQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLEL

Query:  GGVDGVLGMQWLYSLGVTEVDW
        GGVD +LGMQWLYSLGVT VDW
Subjt:  GGVDGVLGMQWLYSLGVTEVDW

A0A5D3D5P9 Ty3/gypsy retrotransposon protein

5.9e-81

69.37

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Query:  ENQGNTIFPIRTVTLRTTA-GEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVVKED-EEYEIVEEAEWDETELNCVEINPE
        +N+ NT+FPIRT+TLR++   E ++EG  KRLPDAEFQARKEKGLCFRCNEKY   H+C+ +EQRELRM+VV E  EEYEIVE+ E +E EL C+EIN  
Subjt:  ENQGNTIFPIRTVTLRTTA-GEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVVKED-EEYEIVEEAEWDETELNCVEINPE

Query:  DQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLEL
           +VELSINSVVGL +PGTMKVRGK+   EV+ILIDCGATHNF+S+K+V++LSLP K TSHYGVILGSGAAV+GKG+CE +E++L+ WK+  +FLPLEL
Subjt:  DQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLEL

Query:  GGVDGVLGMQWLYSLGVTEVDW
        GGVD +LGMQWLYSLGVT VDW
Subjt:  GGVDGVLGMQWLYSLGVTEVDW

A0A5D3DLL9 Ty3/gypsy retrotransposon protein

5.9e-81

69.37

Show/hide

Query:  ENQGNTIFPIRTVTLRTTA-GEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVVKED-EEYEIVEEAEWDETELNCVEINPE
        +N+ NT+FPIRT+TLR++   E ++EG  KRLPDAEFQARKEKGLCFRCNEKY   H+C+ +EQRELRM+VV E  EEYEIVE+ E +E EL C+EIN  
Subjt:  ENQGNTIFPIRTVTLRTTA-GEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVVKED-EEYEIVEEAEWDETELNCVEINPE

Query:  DQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLEL
           +VELSINSVVGL +PGTMKVRGK+   EV+ILIDCGATHNF+S+K+V++LSLP K TSHYGVILGSGAAV+GKG+CE +E++L+ WK+  +FLPLEL
Subjt:  DQAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLEL

Query:  GGVDGVLGMQWLYSLGVTEVDW
        GGVD +LGMQWLYSLGVT VDW
Subjt:  GGVDGVLGMQWLYSLGVTEVDW

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G29750.1 Eukaryotic aspartyl protease family protein

3.0e-16

39.82

Show/hide

Query:  VVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLELG--GVDGVLGM
        V+ LT    M+  G I D +V++ ID GAT NFI  ++   L LPT  T+   V+LG    ++  G C GI L ++  ++  NFL L+L    VD +LG 
Subjt:  VVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLELG--GVDGVLGM

Query:  QWLYSLGVTEVDW
        +WL  LG T V+W
Subjt:  QWLYSLGVTEVDW

AT3G30770.1 Eukaryotic aspartyl protease family protein

4.4e-12

36.7

Show/hide

Query:  QAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLEL-
        + I ++   S    T    M+  G I   +V+++ID GAT+NFISD++   L LPT TT+   V+LG    ++  G C GI L ++  ++  NFL L+L 
Subjt:  QAIVELSINSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLEL-

Query:  -GGVDGVLG
           VD +LG
Subjt:  -GGVDGVLG

Sequences

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CDS sequence

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ATGAATAACAGTGAGAACCAGGGAAATACCATATTTCCAATACGGACGGTGACATTAAGAACAACGGCTGGGGAAGTTAAGAAAGAAGGCCCGACGAAGAGACTACCCGA
TGCAGAATTTCAAGCCCGAAAAGAGAAGGGACTTTGCTTTCGCTGTAATGAAAAGTACTTTCATGGACACCGATGTAAAGGAAGGGAGCAAAGGGAACTAAGAATGTATG
TGGTGAAGGAGGATGAGGAATATGAAATTGTGGAGGAAGCGGAATGGGATGAGACAGAATTGAACTGTGTCGAGATAAATCCAGAAGATCAGGCTATCGTTGAACTTTCC
ATAAATTCAGTGGTTGGGCTGACGAATCCCGGAACGATGAAGGTGAGAGGAAAGATTAAGGATAGAGAAGTAATTATCCTAATAGATTGTGGAGCAACCCATAACTTCAT
CTCGGACAAGGTGGTGCAGGAACTGAGTTTACCGACGAAGACTACCTCACACTATGGAGTGATTTTGGGCTCGGGTGCAGCTGTGAAGGGGAAAGGAATTTGTGAAGGCA
TCGAGCTAGAACTGGAGGGATGGAAAGTGGAAGCAAACTTCTTACCACTTGAGTTGGGAGGAGTAGATGGAGTACTAGGAATGCAGTGGTTGTATTCATTGGGCGTGACG
GAAGTGGATTGGTAA

mRNA sequence

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Protein sequence

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MNNSENQGNTIFPIRTVTLRTTAGEVKKEGPTKRLPDAEFQARKEKGLCFRCNEKYFHGHRCKGREQRELRMYVVKEDEEYEIVEEAEWDETELNCVEINPEDQAIVELS
INSVVGLTNPGTMKVRGKIKDREVIILIDCGATHNFISDKVVQELSLPTKTTSHYGVILGSGAAVKGKGICEGIELELEGWKVEANFLPLELGGVDGVLGMQWLYSLGVT
EVDW

CSPI04G27530 (gene) of Cucumber (PI 183967) v1 genome