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CSPI04G27700 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI04G27700
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationChr4:24344046..24344409
RNA-Seq ExpressionCSPI04G27700
SyntenyCSPI04G27700
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025975.1 uncharacterized protein E6C27_scaffold34G002910 [Cucumis melo var. makuwa]3.2e-1361.54Show/hide
Query:  FCDTKRSKFMNLVQGDMTVLEYDKRFTELAKYALDFVTNEVDKCKRFKKGLQTK----FSTTRNW
        FCD KR KFM+L+QGDMTV+EY+K FTELAKY LDFV +EVDKCK+F +GL+ +     + + NW
Subjt:  FCDTKRSKFMNLVQGDMTVLEYDKRFTELAKYALDFVTNEVDKCKRFKKGLQTK----FSTTRNW

KAA0036513.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-1751.43Show/hide
Query:  AQKIGGLFMRPRQARKIPSHGMILRRPLEISATLI--LFCDTKRSKFMNLVQGDMTVLEYDKRFTELAKYALDFVTNEVDKCKRFKKGLQTK----FSTT
        A+  GGL M+ RQ  K    G   RR   IS+TL+   FCD  R++FMNLV+GD+TV EY+KRF ELAKYA  FV +E DKCK+FK GLQT+     +  
Subjt:  AQKIGGLFMRPRQARKIPSHGMILRRPLEISATLI--LFCDTKRSKFMNLVQGDMTVLEYDKRFTELAKYALDFVTNEVDKCKRFKKGLQTK----FSTT

Query:  RNWGY
         NW +
Subjt:  RNWGY

KAE8648186.1 hypothetical protein Csa_018470 [Cucumis sativus]3.5e-1260.94Show/hide
Query:  FCDTKRSKFMNLVQGDMTVLEYDKRFTELAKYALDFVTNEVDKCKRFKKGLQTK----FSTTRN
        FCD KR+ F+NLVQGD T++EY+K FT+LAKYAL FV +E DKCK F+ GL+T+    FS  RN
Subjt:  FCDTKRSKFMNLVQGDMTVLEYDKRFTELAKYALDFVTNEVDKCKRFKKGLQTK----FSTTRN

TYK04211.1 uncharacterized protein E5676_scaffold24967G00130 [Cucumis melo var. makuwa]9.2e-1360Show/hide
Query:  FCDTKRSKFMNLVQGDMTVLEYDKRFTELAKYALDFVTNEVDKCKRFKKGLQTK----FSTTRNW
        FCD KR KFM+L+QGDMTV+EY+K FTELAKY +DFV +EVDKCK+F +GL+ +     + + NW
Subjt:  FCDTKRSKFMNLVQGDMTVLEYDKRFTELAKYALDFVTNEVDKCKRFKKGLQTK----FSTTRNW

TYK04983.1 uncharacterized protein E5676_scaffold143G002070 [Cucumis melo var. makuwa]9.2e-1368.52Show/hide
Query:  FCDTKRSKFMNLVQGDMTVLEYDKRFTELAKYALDFVTNEVDKCKRFKKGLQTK
        FCD KR+K MNLV+G++TV  Y+K+FTELAKYAL FV +E DKCKRF++GLQT+
Subjt:  FCDTKRSKFMNLVQGDMTVLEYDKRFTELAKYALDFVTNEVDKCKRFKKGLQTK

TrEMBL top hitse value%identityAlignment
A0A5A7SND8 Retrotrans_gag domain-containing protein1.5e-1361.54Show/hide
Query:  FCDTKRSKFMNLVQGDMTVLEYDKRFTELAKYALDFVTNEVDKCKRFKKGLQTK----FSTTRNW
        FCD KR KFM+L+QGDMTV+EY+K FTELAKY LDFV +EVDKCK+F +GL+ +     + + NW
Subjt:  FCDTKRSKFMNLVQGDMTVLEYDKRFTELAKYALDFVTNEVDKCKRFKKGLQTK----FSTTRNW

A0A5A7T0V0 DNA/RNA polymerases superfamily protein6.0e-1851.43Show/hide
Query:  AQKIGGLFMRPRQARKIPSHGMILRRPLEISATLI--LFCDTKRSKFMNLVQGDMTVLEYDKRFTELAKYALDFVTNEVDKCKRFKKGLQTK----FSTT
        A+  GGL M+ RQ  K    G   RR   IS+TL+   FCD  R++FMNLV+GD+TV EY+KRF ELAKYA  FV +E DKCK+FK GLQT+     +  
Subjt:  AQKIGGLFMRPRQARKIPSHGMILRRPLEISATLI--LFCDTKRSKFMNLVQGDMTVLEYDKRFTELAKYALDFVTNEVDKCKRFKKGLQTK----FSTT

Query:  RNWGY
         NW +
Subjt:  RNWGY

A0A5D3BWX9 Retrotrans_gag domain-containing protein4.4e-1360Show/hide
Query:  FCDTKRSKFMNLVQGDMTVLEYDKRFTELAKYALDFVTNEVDKCKRFKKGLQTK----FSTTRNW
        FCD KR KFM+L+QGDMTV+EY+K FTELAKY +DFV +EVDKCK+F +GL+ +     + + NW
Subjt:  FCDTKRSKFMNLVQGDMTVLEYDKRFTELAKYALDFVTNEVDKCKRFKKGLQTK----FSTTRNW

A0A5D3BZ05 Retrotrans_gag domain-containing protein4.4e-1368.52Show/hide
Query:  FCDTKRSKFMNLVQGDMTVLEYDKRFTELAKYALDFVTNEVDKCKRFKKGLQTK
        FCD KR+K MNLV+G++TV  Y+K+FTELAKYAL FV +E DKCKRF++GLQT+
Subjt:  FCDTKRSKFMNLVQGDMTVLEYDKRFTELAKYALDFVTNEVDKCKRFKKGLQTK

A0A5D3DE46 Retrotrans_gag domain-containing protein6.0e-1056.9Show/hide
Query:  FCDTKRSKFMNLVQGDMTVLEYDKRFTELAKYALDFVTNEVDKCKRFKKGLQTKFSTT
        FCD KR KFM+ VQG++ V +Y+KRFTEL KYAL FV +E  KCK F+  L+ K  T+
Subjt:  FCDTKRSKFMNLVQGDMTVLEYDKRFTELAKYALDFVTNEVDKCKRFKKGLQTKFSTT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTGCCTCGAAGAGAAGAAGGCGCAAAAGATTGGTGGACTCTTCATGCGGCCAAGACAAGCAAGGAAGATACCATCACATGGGATGATTTTAAGAAGGCCTTTAGA
AATAAGTGCTACCCTCATTCTTTTTTGTGACACAAAGAGAAGCAAATTCATGAATCTGGTCCAAGGTGACATGACTGTTCTAGAGTATGACAAAAGATTTACGGAGTTGG
CGAAGTATGCCTTAGACTTCGTAACTAATGAAGTAGATAAGTGCAAGCGATTTAAAAAGGGCCTGCAAACCAAATTTAGCACTACAAGAAATTGGGGCTATCCCGACGCA
TAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTGCCTCGAAGAGAAGAAGGCGCAAAAGATTGGTGGACTCTTCATGCGGCCAAGACAAGCAAGGAAGATACCATCACATGGGATGATTTTAAGAAGGCCTTTAGA
AATAAGTGCTACCCTCATTCTTTTTTGTGACACAAAGAGAAGCAAATTCATGAATCTGGTCCAAGGTGACATGACTGTTCTAGAGTATGACAAAAGATTTACGGAGTTGG
CGAAGTATGCCTTAGACTTCGTAACTAATGAAGTAGATAAGTGCAAGCGATTTAAAAAGGGCCTGCAAACCAAATTTAGCACTACAAGAAATTGGGGCTATCCCGACGCA
TAA
Protein sequenceShow/hide protein sequence
MDCLEEKKAQKIGGLFMRPRQARKIPSHGMILRRPLEISATLILFCDTKRSKFMNLVQGDMTVLEYDKRFTELAKYALDFVTNEVDKCKRFKKGLQTKFSTTRNWGYPDA