CuGenDBv2

Gene ID	CSPI04G27730
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DNA helicase
Genome location	Chr4:24391787..24393359
RNA-Seq Expression	CSPI04G27730
Synteny	CSPI04G27730
Gene Ontology terms	GO:0006281 - DNA repair (biological process) GO:0006310 - DNA recombination (biological process) GO:0032508 - DNA duplex unwinding (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003678 - DNA helicase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

TYK29006.1 ATP-dependent DNA helicase-like protein RECG [Cucumis melo var. makuwa]

2.4e-63

93.89

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Query:  GIRASYSFSFLEVVVCCEIAERESHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE
        GIRASYSFSFLEVVVCCEIAERES+SGCTVDD+T GKK IYLHLKKFFRGNRFTF PFLR LGEKHKEGEVVCVSGKVRTM SEDHYEMREYNIDVLQDE
Subjt:  GIRASYSFSFLEVVVCCEIAERESHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE

Query:  KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA
        K+VPLYAKERPYPIYPSKRGSSPTFLRDIIA
Subjt:  KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA

XP_008454766.1 PREDICTED: ATP-dependent DNA helicase homolog RECG, chloroplastic [Cucumis melo]

2.4e-63

93.89

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Query:  GIRASYSFSFLEVVVCCEIAERESHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE
        GIRASYSFSFLEVVVCCEIAERES+SGCTVDD+T GKK IYLHLKKFFRGNRFTF PFLR LGEKHKEGEVVCVSGKVRTM SEDHYEMREYNIDVLQDE
Subjt:  GIRASYSFSFLEVVVCCEIAERESHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE

Query:  KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA
        K+VPLYAKERPYPIYPSKRGSSPTFLRDIIA
Subjt:  KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA

XP_011659838.1 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 [Cucumis sativus]

1.6e-67

98.47

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Query:  GIRASYSFSFLEVVVCCEIAERESHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE
        GIRASYSFSFLEVVVCCEIAERESHSGCTVDDST GKKKIYLHLKKFFRGNRFTFKPFL SLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE
Subjt:  GIRASYSFSFLEVVVCCEIAERESHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE

Query:  KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA
        KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA
Subjt:  KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA

XP_022974240.1 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X2 [Cucurbita maxima]

2.0e-57

85.5

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Query:  GIRASYSFSFLEVVVCCEIAERESHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE
        GIRASYSFSFLEVVV CEIAERES+SGC  D++T GKK +YLHLKKFFRG RFTF+PFLRSLG KHKEGE+VCVSGKVRTM SEDHYEMREYNIDVLQDE
Subjt:  GIRASYSFSFLEVVVCCEIAERESHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE

Query:  KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA
        K+VP YAKERPYPIYPSK+G  PTFLRDIIA
Subjt:  KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA

XP_031742292.1 ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X2 [Cucumis sativus]

1.6e-67

98.47

Show/hide

Query:  GIRASYSFSFLEVVVCCEIAERESHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE
        GIRASYSFSFLEVVVCCEIAERESHSGCTVDDST GKKKIYLHLKKFFRGNRFTFKPFL SLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE
Subjt:  GIRASYSFSFLEVVVCCEIAERESHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE

Query:  KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA
        KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA
Subjt:  KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C041 DNA helicase

1.2e-63

93.89

Show/hide

Query:  GIRASYSFSFLEVVVCCEIAERESHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE
        GIRASYSFSFLEVVVCCEIAERES+SGCTVDD+T GKK IYLHLKKFFRGNRFTF PFLR LGEKHKEGEVVCVSGKVRTM SEDHYEMREYNIDVLQDE
Subjt:  GIRASYSFSFLEVVVCCEIAERESHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE

Query:  KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA
        K+VPLYAKERPYPIYPSKRGSSPTFLRDIIA
Subjt:  KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA

A0A5D3DZB1 ATP-dependent DNA helicase-like protein RECG

1.2e-63

93.89

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Query:  GIRASYSFSFLEVVVCCEIAERESHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE
        GIRASYSFSFLEVVVCCEIAERES+SGCTVDD+T GKK IYLHLKKFFRGNRFTF PFLR LGEKHKEGEVVCVSGKVRTM SEDHYEMREYNIDVLQDE
Subjt:  GIRASYSFSFLEVVVCCEIAERESHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE

Query:  KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA
        K+VPLYAKERPYPIYPSKRGSSPTFLRDIIA
Subjt:  KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA

A0A6J1FSV3 DNA helicase

2.8e-57

84.73

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Query:  GIRASYSFSFLEVVVCCEIAERESHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE
        GIRASYSFSFLEVVV CEIAERES+SGC  D++T GKK +YLHLKKFFRG RFTF+PFLRSLG  HKEGE+VCVSGKVRTM SEDHYEMREYNIDVLQDE
Subjt:  GIRASYSFSFLEVVVCCEIAERESHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE

Query:  KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA
        K+VP YAKERPYPIYPSK+G +PTFLRDIIA
Subjt:  KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA

A0A6J1IDF6 DNA helicase

9.7e-58

85.5

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Query:  GIRASYSFSFLEVVVCCEIAERESHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE
        GIRASYSFSFLEVVV CEIAERES+SGC  D++T GKK +YLHLKKFFRG RFTF+PFLRSLG KHKEGE+VCVSGKVRTM SEDHYEMREYNIDVLQDE
Subjt:  GIRASYSFSFLEVVVCCEIAERESHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE

Query:  KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA
        K+VP YAKERPYPIYPSK+G  PTFLRDIIA
Subjt:  KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA

A0A6J1IFJ2 DNA helicase

9.7e-58

85.5

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Query:  GIRASYSFSFLEVVVCCEIAERESHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE
        GIRASYSFSFLEVVV CEIAERES+SGC  D++T GKK +YLHLKKFFRG RFTF+PFLRSLG KHKEGE+VCVSGKVRTM SEDHYEMREYNIDVLQDE
Subjt:  GIRASYSFSFLEVVVCCEIAERESHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDE

Query:  KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA
        K+VP YAKERPYPIYPSK+G  PTFLRDIIA
Subjt:  KNVPLYAKERPYPIYPSKRGSSPTFLRDIIA

SwissProt top hits

e value

%identity

Alignment

F4INA9 ATP-dependent DNA helicase homolog RECG, chloroplastic

4.1e-37

56.82

Show/hide

Query:  GIRASYSFSFLEVVVCCEIAERE-SHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQD
        G+RAS SFSFLEV+V CE++ R+ +    + +      K I+LHLKKFFRG RFT++PFL S+ EKHK G++VC+SGKV+++ +EDH+EMREYNIDVL+D
Subjt:  GIRASYSFSFLEVVVCCEIAERE-SHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQD

Query:  EKNVPLYAKERPYPIYPSKRGSSPTFLRDIIA
        E+     A+ RPYPIYPSK G +P FL D+I+
Subjt:  EKNVPLYAKERPYPIYPSKRGSSPTFLRDIIA

Arabidopsis top hits

e value

%identity

Alignment

AT2G01440.1 DEAD/DEAH box RNA helicase family protein

2.9e-38

56.82

Show/hide

Query:  GIRASYSFSFLEVVVCCEIAERE-SHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQD
        G+RAS SFSFLEV+V CE++ R+ +    + +      K I+LHLKKFFRG RFT++PFL S+ EKHK G++VC+SGKV+++ +EDH+EMREYNIDVL+D
Subjt:  GIRASYSFSFLEVVVCCEIAERE-SHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQD

Query:  EKNVPLYAKERPYPIYPSKRGSSPTFLRDIIA
        E+     A+ RPYPIYPSK G +P FL D+I+
Subjt:  EKNVPLYAKERPYPIYPSKRGSSPTFLRDIIA

Sequences

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CDS sequence

Show/hide CDS sequence

GGAATCAGAGCTAGTTACTCCTTTTCATTTCTTGAGGTAGTTGTGTGCTGTGAAATTGCAGAAAGAGAATCACATTCTGGTTGTACAGTTGATGATAGTACTGTTGGAAA
GAAGAAAATTTATTTGCACTTGAAGAAATTTTTTCGTGGTAATCGGTTTACGTTCAAGCCTTTTCTAAGAAGTCTTGGAGAGAAGCATAAAGAGGGAGAGGTTGTTTGTG
TAAGTGGTAAGGTAAGGACTATGCCATCTGAAGATCACTATGAGATGAGGGAATATAACATTGATGTTCTTCAAGACGAAAAGAATGTGCCACTTTATGCAAAGGAGAGG
CCATATCCTATATATCCTTCTAAAAGGGGATCGAGTCCAACATTTCTTAGAGATATTATAGCCAGTTACCATTTTCTGAATGCAAAGACAAGAAGAAACCTTATTTCAGA
AATGAAGGATGAGAATGGGGCGGTTACAAATTCCTTTCAAGATATAGAAAGACTTGTATTGGGTTTCTTTGAGAACCTTTACACAAAGATCCCAGGAGTCAGATTCATTC
CCCCATTCAATGATTGGCCTTTTGTAACTCCAACTCAGAACACAACCCTCACCTCTCAGTTTACAGTGGAGGAAATTTATTTGGCAGTAAAAGCTCTTGGTAGAAACAAA
GCCCCGAGCCCGGATGGTTTTTACAACGAAATTTCTTGTCAAACATTGGTCTAG

mRNA sequence

Show/hide mRNA sequence

GGGAATCAGAGCTAGTTACTCCTTTTCATTTCTTGAGGTAGTTGTGTGCTGTGAAATTGCAGAAAGAGAATCACATTCTGGTTGTACAGTTGATGATAGTACTGTTGGAA
AGAAGAAAATTTATTTGCACTTGAAGAAATTTTTTCGTGGTAATCGGTTTACGTTCAAGCCTTTTCTAAGAAGTCTTGGAGAGAAGCATAAAGAGGGAGAGGTTGTTTGT
GTAAGTGGTAAGGTAAGGACTATGCCATCTGAAGATCACTATGAGATGAGGGAATATAACATTGATGTTCTTCAAGACGAAAAGAATGTGCCACTTTATGCAAAGGAGAG
GCCATATCCTATATATCCTTCTAAAAGGGGATCGAGTCCAACATTTCTTAGAGATATTATAGCCAGTTACCATTTTCTGAATGCAAAGACAAGAAGAAACCTTATTTCAG
AAATGAAGGATGAGAATGGGGCGGTTACAAATTCCTTTCAAGATATAGAAAGACTTGTATTGGGTTTCTTTGAGAACCTTTACACAAAGATCCCAGGAGTCAGATTCATT
CCCCCATTCAATGATTGGCCTTTTGTAACTCCAACTCAGAACACAACCCTCACCTCTCAGTTTACAGTGGAGGAAATTTATTTGGCAGTAAAAGCTCTTGGTAGAAACAA
AGCCCCGAGCCCGGATGGTTTTTACAACGAAATTTCTTGTCAAACATTGGTCTAG

Protein sequence

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GIRASYSFSFLEVVVCCEIAERESHSGCTVDDSTVGKKKIYLHLKKFFRGNRFTFKPFLRSLGEKHKEGEVVCVSGKVRTMPSEDHYEMREYNIDVLQDEKNVPLYAKER
PYPIYPSKRGSSPTFLRDIIASYHFLNAKTRRNLISEMKDENGAVTNSFQDIERLVLGFFENLYTKIPGVRFIPPFNDWPFVTPTQNTTLTSQFTVEEIYLAVKALGRNK
APSPDGFYNEISCQTLV

CSPI04G27730 (gene) of Cucumber (PI 183967) v1 genome