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CSPI05G00140 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G00140
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationChr5:164392..165768
RNA-Seq ExpressionCSPI05G00140
SyntenyCSPI05G00140
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006468 - protein phosphorylation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004674 - protein serine/threonine kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016853 - isomerase activity (molecular function)
InterPro domainsIPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042076.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]8.4e-6563.3Show/hide
Query:  MVRIAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIA
        M  +  E   V+ELSINS V L+  GT+KVRG++KG E+VVLIDCGATHNFI E LV  +++ TK+TSHYGMILG GTAI+GKGVCE VEL + EW V+A
Subjt:  MVRIAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIA

Query:  NFQPLELGGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHPSLTKTKVSLKNLMKPWENCDHGFLVECRAMEGRVLSMEE
        +F PLELGG D +LGMQWLYSLG+TE DWRN  MTF + G++++IKG PSLTKT++ LK++MK W   D G+LVECRA+EG V+  EE
Subjt:  NFQPLELGGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHPSLTKTKVSLKNLMKPWENCDHGFLVECRAMEGRVLSMEE
KAA0062868.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-6058.59Show/hide
Query:  VRIAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIAN
        V +  +  A +ELSINSVVGL++ GT+KVRG ++G+EVV+LIDCGATHNF+ E LV  LQ+  KET+HYG+ILG GTAI+GKG+CE++E+ M++WTV  +
Subjt:  VRIAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIAN

Query:  FQPLELGGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHPSLTKTKVSLKNLMKPWENCDHGFLVECRAM-----EGRVLSMEEDGFDDE
        F PLELGG DV+LGMQWLYSLG+T  DW+N  +TF    +++ IKG PSLTK +VSLKNL+K WE  DHG+L+ECR+M     E   L  EE G  +E
Subjt:  FQPLELGGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHPSLTKTKVSLKNLMKPWENCDHGFLVECRAM-----EGRVLSMEEDGFDDE
TYJ96875.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-6058.59Show/hide
Query:  VRIAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIAN
        V +  +  A +ELSINSVVGL++ GT+KVRG ++G+EVV+LIDCGATHNF+ E LV  LQ+  KET+HYG+ILG GTAI+GKG+CE++E+ M++WTV  +
Subjt:  VRIAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIAN

Query:  FQPLELGGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHPSLTKTKVSLKNLMKPWENCDHGFLVECRAM-----EGRVLSMEEDGFDDE
        F PLELGG DV+LGMQWLYSLG+T  DW+N  +TF    +++ IKG PSLTK +VSLKNL+K WE  DHG+L+ECR+M     E   L  EE G  +E
Subjt:  FQPLELGGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHPSLTKTKVSLKNLMKPWENCDHGFLVECRAM-----EGRVLSMEEDGFDDE
TYK18018.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]8.4e-6563.3Show/hide
Query:  MVRIAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIA
        M  +  E   V+ELSINS V L+  GT+KVRG++KG E+VVLIDCGATHNFI E LV  +++ TK+TSHYGMILG GTAI+GKGVCE VEL + EW V+A
Subjt:  MVRIAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIA

Query:  NFQPLELGGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHPSLTKTKVSLKNLMKPWENCDHGFLVECRAMEGRVLSMEE
        +F PLELGG D +LGMQWLYSLG+TE DWRN  MTF + G++++IKG PSLTKT++ LK++MK W   D G+LVECRA+EG V+  EE
Subjt:  NFQPLELGGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHPSLTKTKVSLKNLMKPWENCDHGFLVECRAMEGRVLSMEE
XP_031745972.1 uncharacterized protein LOC116406393 [Cucumis sativus]6.4e-6562.12Show/hide
Query:  VRIAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIAN
        V I  EDQA++ELSINSVVGL+N GT+KVRG+IK REV++LIDCGATHNFI + +V  L + TK TSHYG+ILG   A+KGKG+CE +EL +E W V AN
Subjt:  VRIAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIAN

Query:  FQPLELGGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHPSLTKTKVSLKNLMKPWENCDHGFLVECRAMEGRVLSMEEDGFDDELTVEE
        F PLELGG D VL MQWLYSLG+TEVDW+N  MTF + G++V IKG PSLTK  V LKN++K W + D GFL+ECRAME      E++G ++ L V+E
Subjt:  FQPLELGGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHPSLTKTKVSLKNLMKPWENCDHGFLVECRAMEGRVLSMEEDGFDDELTVEE
TrEMBL top hitse value%identityAlignment
A0A5A7TJB8 Retrotransposable element Tf24.0e-6563.3Show/hide
Query:  MVRIAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIA
        M  +  E   V+ELSINS V L+  GT+KVRG++KG E+VVLIDCGATHNFI E LV  +++ TK+TSHYGMILG GTAI+GKGVCE VEL + EW V+A
Subjt:  MVRIAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIA

Query:  NFQPLELGGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHPSLTKTKVSLKNLMKPWENCDHGFLVECRAMEGRVLSMEE
        +F PLELGG D +LGMQWLYSLG+TE DWRN  MTF + G++++IKG PSLTKT++ LK++MK W   D G+LVECRA+EG V+  EE
Subjt:  NFQPLELGGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHPSLTKTKVSLKNLMKPWENCDHGFLVECRAMEGRVLSMEE
A0A5A7V5H5 Ty3/gypsy retrotransposon protein6.0e-6158.59Show/hide
Query:  VRIAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIAN
        V +  +  A +ELSINSVVGL++ GT+KVRG ++G+EVV+LIDCGATHNF+ E LV  LQ+  KET+HYG+ILG GTAI+GKG+CE++E+ M++WTV  +
Subjt:  VRIAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIAN

Query:  FQPLELGGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHPSLTKTKVSLKNLMKPWENCDHGFLVECRAM-----EGRVLSMEEDGFDDE
        F PLELGG DV+LGMQWLYSLG+T  DW+N  +TF    +++ IKG PSLTK +VSLKNL+K WE  DHG+L+ECR+M     E   L  EE G  +E
Subjt:  FQPLELGGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHPSLTKTKVSLKNLMKPWENCDHGFLVECRAM-----EGRVLSMEEDGFDDE
A0A5D3BEL2 Ty3/gypsy retrotransposon protein6.0e-6158.59Show/hide
Query:  VRIAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIAN
        V +  +  A +ELSINSVVGL++ GT+KVRG ++G+EVV+LIDCGATHNF+ E LV  LQ+  KET+HYG+ILG GTAI+GKG+CE++E+ M++WTV  +
Subjt:  VRIAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIAN

Query:  FQPLELGGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHPSLTKTKVSLKNLMKPWENCDHGFLVECRAM-----EGRVLSMEEDGFDDE
        F PLELGG DV+LGMQWLYSLG+T  DW+N  +TF    +++ IKG PSLTK +VSLKNL+K WE  DHG+L+ECR+M     E   L  EE G  +E
Subjt:  FQPLELGGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHPSLTKTKVSLKNLMKPWENCDHGFLVECRAM-----EGRVLSMEEDGFDDE
A0A5D3D331 Retrotransposable element Tf24.0e-6563.3Show/hide
Query:  MVRIAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIA
        M  +  E   V+ELSINS V L+  GT+KVRG++KG E+VVLIDCGATHNFI E LV  +++ TK+TSHYGMILG GTAI+GKGVCE VEL + EW V+A
Subjt:  MVRIAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIA

Query:  NFQPLELGGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHPSLTKTKVSLKNLMKPWENCDHGFLVECRAMEGRVLSMEE
        +F PLELGG D +LGMQWLYSLG+TE DWRN  MTF + G++++IKG PSLTKT++ LK++MK W   D G+LVECRA+EG V+  EE
Subjt:  NFQPLELGGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHPSLTKTKVSLKNLMKPWENCDHGFLVECRAMEGRVLSMEE
A0A5D3DC20 Transposon Tf2-1 polyprotein isoform X16.0e-6158.59Show/hide
Query:  VRIAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIAN
        V +  +  A +ELSINSVVGL++ GT+KVRG ++G+EVV+LIDCGATHNF+ E LV  LQ+  KET+HYG+ILG GTAI+GKG+CE++E+ M++WTV  +
Subjt:  VRIAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIAN

Query:  FQPLELGGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHPSLTKTKVSLKNLMKPWENCDHGFLVECRAM-----EGRVLSMEEDGFDDE
        F PLELGG DV+LGMQWLYSLG+T  DW+N  +TF    +++ IKG PSLTK +VSLKNL+K WE  DHG+L+ECR+M     E   L  EE G  +E
Subjt:  FQPLELGGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHPSLTKTKVSLKNLMKPWENCDHGFLVECRAM-----EGRVLSMEEDGFDDE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G29750.1 Eukaryotic aspartyl protease family protein2.5e-1434.01Show/hide
Query:  VVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIANFQPLELG--GGDVVLGM
        V+ L+    ++  G I   +VVV ID GAT NFIL  L   L++ T  T+   ++LG    I+  G C  + L ++E  +  NF  L+L     DV+LG 
Subjt:  VVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIANFQPLELG--GGDVVLGM

Query:  QWLYSLGITEVDWRNFVMTFDYQGRRVVI-KGHPSLTK--TKVSLKN
        +WL  LG T V+W+N   +F +  + + +   H  L +  TKV +K+
Subjt:  QWLYSLGITEVDWRNFVMTFDYQGRRVVI-KGHPSLTK--TKVSLKN
AT3G30770.1 Eukaryotic aspartyl protease family protein4.1e-0927.91Show/hide
Query:  IAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIANFQ
        + E+ + + ++   S    +    ++  G I   +VVV+ID GAT+NFI + L  VL++ T  T+   ++LG    I+  G C  + LL++E  +  NF 
Subjt:  IAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIANFQ

Query:  PLEL--GGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHP---SLTKTKVSLKNLMKPWENCDH
         L+L     DV+LG     +L    + W N   +F +  + V +           TKV +K+  +  E  DH
Subjt:  PLEL--GGGDVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHP---SLTKTKVSLKNLMKPWENCDH

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAGGATAGCAGAAGAGGATCAAGCTGTAATAGAATTGTCAATTAATTCAGTTGTGGGCTTGTCGAATCTGGGTACTGTGAAGGTGAGAGGGAGAATCAAAGGTAG
AGAAGTGGTGGTCTTAATAGATTGCGGTGCTACCCACAATTTTATTTTAGAAACACTGGTTGATGTATTGCAAGTATCCACAAAGGAGACCTCACATTATGGAATGATTT
TGGGGTTTGGAACAGCCATTAAAGGCAAGGGGGTGTGTGAGGCTGTGGAACTACTTATGGAAGAGTGGACGGTGATAGCCAATTTTCAACCATTGGAGTTAGGAGGAGGG
GATGTGGTGCTAGGGATGCAGTGGTTATACTCACTGGGCATTACCGAAGTGGACTGGCGTAATTTTGTGATGACATTCGACTATCAAGGAAGAAGGGTAGTTATCAAAGG
ACACCCGAGTCTGACCAAGACAAAGGTAAGTTTGAAGAATCTGATGAAGCCGTGGGAAAACTGTGACCATGGGTTTTTAGTAGAATGTCGAGCGATGGAAGGGAGAGTCC
TATCCATGGAAGAAGATGGCTTTGATGATGAATTGACAGTGGAAGAATAA
mRNA sequenceShow/hide mRNA sequence
GTTTTGTCGACCGGTTGGGTTGGCTCAAATGATGCGGTTGGCTCACTCGTAGAGAACTGGGAAGTGATCCATAATGAGTCAAACCTCAAGGGCTATGCCGGTGGTAAGTA
CCCTTCTCCTTCCCCAGCTAATGCTAAGTTGAATTTAGTTATAGCTTCGGGCGATAGCAAGGGTAACACGACCTTTCCAATGAGAACAATCACGTTGAGGGGATAACACC
TGGAGAAAATAAAAGAGAAGGATCTACGAAAAGGCTATTCGACGCCAAGTTTCAGGCTCGAAAAGAGAAAGGTCTCTGTTTTCAATGTAATGAGAAATATTCTCATGATC
ATAAATGTAAGCTAGGGAGCAAAGGGAGTTGTGAATGTACGTGGTAAGGGCAGATGACGAGAACTGGATATTATAGAAGATATTGAGCAAGAAGAGAAGGAACTTAAAAT
GGTGAGGATAGCAGAAGAGGATCAAGCTGTAATAGAATTGTCAATTAATTCAGTTGTGGGCTTGTCGAATCTGGGTACTGTGAAGGTGAGAGGGAGAATCAAAGGTAGAG
AAGTGGTGGTCTTAATAGATTGCGGTGCTACCCACAATTTTATTTTAGAAACACTGGTTGATGTATTGCAAGTATCCACAAAGGAGACCTCACATTATGGAATGATTTTG
GGGTTTGGAACAGCCATTAAAGGCAAGGGGGTGTGTGAGGCTGTGGAACTACTTATGGAAGAGTGGACGGTGATAGCCAATTTTCAACCATTGGAGTTAGGAGGAGGGGA
TGTGGTGCTAGGGATGCAGTGGTTATACTCACTGGGCATTACCGAAGTGGACTGGCGTAATTTTGTGATGACATTCGACTATCAAGGAAGAAGGGTAGTTATCAAAGGAC
ACCCGAGTCTGACCAAGACAAAGGTAAGTTTGAAGAATCTGATGAAGCCGTGGGAAAACTGTGACCATGGGTTTTTAGTAGAATGTCGAGCGATGGAAGGGAGAGTCCTA
TCCATGGAAGAAGATGGCTTTGATGATGAATTGACAGTGGAAGAATAAGTGGCGGTGATCCTCAAGAAATTTGAAGATGTGTTCAATTGGCCAGAAAGGTTGCCGTCACA
GAGGACTATCGAACACCATATACATTTGAAGCAGGGAACAGATCCGGTAAATGTCAGGCCGTACCATTATGCTTTTTAACAGAAGGCGAAAATGGAGAAGTTAGTTGTTG
AAATGCTAGCATCAGGGATTATCCGTCCAAGTAAGAGCCCGTTTTCCAGCCCTGTCCTATTGGTGAGAAAAAAAAATGGAAGTTGGTGCTTTTGCGTTGATTATCGGACC
CTGAATAATGTAACCATTCCGGACAAATTTCCCATATATGTAATTGAAGAGCCCTTT
Protein sequenceShow/hide protein sequence
MVRIAEEDQAVIELSINSVVGLSNLGTVKVRGRIKGREVVVLIDCGATHNFILETLVDVLQVSTKETSHYGMILGFGTAIKGKGVCEAVELLMEEWTVIANFQPLELGGG
DVVLGMQWLYSLGITEVDWRNFVMTFDYQGRRVVIKGHPSLTKTKVSLKNLMKPWENCDHGFLVECRAMEGRVLSMEEDGFDDELTVEE