CuGenDBv2

Gene ID	CSPI05G00360
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	Chr5:500423..501144
RNA-Seq Expression	CSPI05G00360
Synteny	CSPI05G00360
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	IPR007120 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain IPR015712 - DNA-directed RNA polymerase, subunit 2 IPR037033 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAF9825357.1 hypothetical protein H0E87_005079 [Populus deltoides]

4.7e-50

93.52

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Query:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
        +H    IYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQIL DGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
Subjt:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED

Query:  IYTSFHIQ
        IYTSFHI+
Subjt:  IYTSFHIQ

YP_004841775.1 RNA polymerase beta subunit [Cucumis melo subsp. melo]

4.7e-50

93.52

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Query:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
        +H    IYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQIL DGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
Subjt:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED

Query:  IYTSFHIQ
        IYTSFHI+
Subjt:  IYTSFHIQ

YP_009004036.1 RNA polymerase beta subunit [Cucumis hystrix]

4.7e-50

93.52

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Query:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
        +H    IYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQIL DGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
Subjt:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED

Query:  IYTSFHIQ
        IYTSFHI+
Subjt:  IYTSFHIQ

YP_009346477.1 RNA polymerase beta subunit [Cucumis x hytivus]

4.7e-50

93.52

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Query:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
        +H    IYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQIL DGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
Subjt:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED

Query:  IYTSFHIQ
        IYTSFHI+
Subjt:  IYTSFHIQ

YP_247591.1 RNA polymerase beta subunit [Cucumis sativus]

4.7e-50

93.52

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Query:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
        +H    IYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQIL DGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
Subjt:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED

Query:  IYTSFHIQ
        IYTSFHI+
Subjt:  IYTSFHIQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S4ETZ9 DNA-directed RNA polymerase subunit beta

2.3e-50

93.52

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Query:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
        +H    IYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQIL DGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
Subjt:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED

Query:  IYTSFHIQ
        IYTSFHI+
Subjt:  IYTSFHIQ

A0A1X9Q1B9 DNA-directed RNA polymerase subunit beta

2.3e-50

93.52

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Query:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
        +H    IYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQIL DGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
Subjt:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED

Query:  IYTSFHIQ
        IYTSFHI+
Subjt:  IYTSFHIQ

A0A218KG28 DNA-directed RNA polymerase subunit beta

2.3e-50

93.52

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Query:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
        +H    IYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQIL DGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
Subjt:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED

Query:  IYTSFHIQ
        IYTSFHI+
Subjt:  IYTSFHIQ

A0A249RXK2 DNA-directed RNA polymerase subunit beta

2.3e-50

93.52

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Query:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
        +H    IYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQIL DGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
Subjt:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED

Query:  IYTSFHIQ
        IYTSFHI+
Subjt:  IYTSFHIQ

A0A249RZI0 DNA-directed RNA polymerase subunit beta

2.3e-50

93.52

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Query:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
        +H    IYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQIL DGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
Subjt:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED

Query:  IYTSFHIQ
        IYTSFHI+
Subjt:  IYTSFHIQ

SwissProt top hits

e value

%identity

Alignment

A4GYQ0 DNA-directed RNA polymerase subunit beta

3.9e-47

81.48

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Query:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
        +H+   IYTD DKII SGNGYT  IPLVMYQRSNKNTCM QK+QV +GKCIK+GQ+L DGAATVGGELALGKN+LVAYMPWEGYNFEDAVLISERL+YED
Subjt:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED

Query:  IYTSFHIQ
        +YTSFHI+
Subjt:  IYTSFHIQ

Q09FW9 DNA-directed RNA polymerase subunit beta

1.9e-46

84.26

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Query:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
        +H+   IYTDTDKII SGNG T  IPLVMYQRSNKNTCM QK QV +GKCIKKGQIL DGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERL+Y D
Subjt:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED

Query:  IYTSFHIQ
        IYTSFHI+
Subjt:  IYTSFHIQ

Q14FG5 DNA-directed RNA polymerase subunit beta

3.9e-47

81.48

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Query:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
        +H+   IYTD DKII SGNGYT  IPLVMYQRSNKNTCM QK+QV +GKCIK+GQ+L DGAATVGGELALGKN+LVAYMPWEGYNFEDAVLISERL+YED
Subjt:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED

Query:  IYTSFHIQ
        +YTSFHI+
Subjt:  IYTSFHIQ

Q4VZP1 DNA-directed RNA polymerase subunit beta

6.2e-53

93.52

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Query:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
        +H    IYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQIL DGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
Subjt:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED

Query:  IYTSFHIQ
        IYTSFHI+
Subjt:  IYTSFHIQ

Q56P13 DNA-directed RNA polymerase subunit beta

1.1e-46

84.26

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Query:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
        +H+   IYTDTDKI+ SGNG T RIPLVMYQRSNKNTCM QK QV +GKCIKKGQIL  GAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERL+YED
Subjt:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED

Query:  IYTSFHIQ
        IYTSFHI+
Subjt:  IYTSFHIQ

Arabidopsis top hits

e value

%identity

Alignment

ATCG00190.1 RNA polymerase subunit beta

2.6e-46

79.63

Show/hide

Query:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED
        +H+   +YTDT+KI+FSGNG T  IPL+MYQRSNKNTCM QK QV +GKCIKKGQIL DGAATVGGELALGKN+LVAYMPWEGYNFEDAVLISE L+Y D
Subjt:  QHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALGKNVLVAYMPWEGYNFEDAVLISERLIYED

Query:  IYTSFHIQ
        IYTSFHI+
Subjt:  IYTSFHIQ

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATGGCAAAAGTCTTAACTGAAAGGCTTAAAAGGGTTACACCCTCCATCATTGTGCCCTCCCAAAATACCTTGTTGAAAGCAATGAACACAAAACATCAATCAGGCCC
AACTTGCCAACACAAAAAAGTCAAAATTTATACCGATACTGACAAGATCATTTTTTCGGGCAATGGATATACTCGAAGAATTCCATTAGTTATGTATCAACGTTCTAACA
AAAATACTTGTATGCAGCAAAAATCCCAGGTTCACCAGGGTAAATGCATAAAAAAAGGGCAAATTTTAGGGGACGGTGCTGCTACAGTTGGTGGCGAACTTGCTTTGGGA
AAAAACGTATTAGTAGCTTATATGCCATGGGAAGGTTACAATTTTGAAGATGCGGTACTAATTAGCGAGCGTTTGATATATGAAGATATTTATACTTCTTTCCACATACA
GTCTAAGAAGCCCCTTGGTAAGAACATCATCAACCTGTTGGCTTGA

mRNA sequence

Show/hide mRNA sequence

CTATTCTGAAGTTTTGGGCATATATGAAAGAGGATGTCTTCCAATTCTTTGAGAAATTTCATCGAAATGGAAGCTGAATGCGGGTTAGAGAAAATTTCATTTGTTCAATT
CCGAAGGAGGATGCAGTGAAGCCTGAAGGTCAAAGATTTTAGACCAATCAGTTCACATCCCTTACAAAATGATGGCAAAAGTCTTAACTGAAAGGCTTAAAAGGGTTACA
CCCTCCATCATTGTGCCCTCCCAAAATACCTTGTTGAAAGCAATGAACACAAAACATCAATCAGGCCCAACTTGCCAACACAAAAAAGTCAAAATTTATACCGATACTGA
CAAGATCATTTTTTCGGGCAATGGATATACTCGAAGAATTCCATTAGTTATGTATCAACGTTCTAACAAAAATACTTGTATGCAGCAAAAATCCCAGGTTCACCAGGGTA
AATGCATAAAAAAAGGGCAAATTTTAGGGGACGGTGCTGCTACAGTTGGTGGCGAACTTGCTTTGGGAAAAAACGTATTAGTAGCTTATATGCCATGGGAAGGTTACAAT
TTTGAAGATGCGGTACTAATTAGCGAGCGTTTGATATATGAAGATATTTATACTTCTTTCCACATACAGTCTAAGAAGCCCCTTGGTAAGAACATCATCAACCTGTTGGC
TTGAAGGGATACACAGAATGCATATGCTTCCACTGTCAAGTCTTTCTTTAGTGAAATGCCAG

Protein sequence

Show/hide protein sequence

MMAKVLTERLKRVTPSIIVPSQNTLLKAMNTKHQSGPTCQHKKVKIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILGDGAATVGGELALG
KNVLVAYMPWEGYNFEDAVLISERLIYEDIYTSFHIQSKKPLGKNIINLLA

CSPI05G00360 (gene) of Cucumber (PI 183967) v1 genome