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CSPI05G00740 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G00740
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase
Genome locationChr5:972255..972671
RNA-Seq ExpressionCSPI05G00740
SyntenyCSPI05G00740
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049994.1 uncharacterized protein E6C27_scaffold13G001700 [Cucumis melo var. makuwa]2.2e-1946.09Show/hide
Query:  EGPSGI--KG-LRRPKSQGKVCTMTLIKAKNRLHVITGSLLFCNSPNLVLFDLGAMHSFISISHAKSLDHEIEPLEGGILVSTTSDEAFMVEFVCRNCEI
        EG SG   KG + RP+ QGKV  MT  +A++ L VITG++L CN P  +LFDLGA HSF+S      L+  +EPL  G+ + T   +  +V  V RNCE+
Subjt:  EGPSGI--KG-LRRPKSQGKVCTMTLIKAKNRLHVITGSLLFCNSPNLVLFDLGAMHSFISISHAKSLDHEIEPLEGGILVSTTSDEAFMVEFVCRNCEI

Query:  RIKNVTLKVDFILFELHELDVILAMDFL
         +++++L VD +  EL  LDVIL M+FL
Subjt:  RIKNVTLKVDFILFELHELDVILAMDFL

KAA0059506.1 uncharacterized protein E6C27_scaffold518G00110 [Cucumis melo var. makuwa]1.3e-1945.26Show/hide
Query:  QPYHPNEAEEGPSGI--KG-LRRPKSQGKVCTMTLIKAKNRLHVITGSLLFCNSPNLVLFDLGAMHSFISISHAKSLDHEIEPLEGGILVSTTSDEAFMV
        QP H  +  EG SG   KG + RP+ QGKV  MT  +A++   VITG++L CN P  VLFD GA HSF+S      L+  +EPL  G+ + T   +  +V
Subjt:  QPYHPNEAEEGPSGI--KG-LRRPKSQGKVCTMTLIKAKNRLHVITGSLLFCNSPNLVLFDLGAMHSFISISHAKSLDHEIEPLEGGILVSTTSDEAFMV

Query:  EFVCRNCEIRIKNVTLKVDFILFELHELDVILAMDFL
          V RNCE+ ++ ++L VD +  EL  LDVIL MDFL
Subjt:  EFVCRNCEIRIKNVTLKVDFILFELHELDVILAMDFL

KAA0060066.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.8e-1943.85Show/hide
Query:  PNEAEEGPSGIKGLRRPKSQGKVCTMTLIKAKNRLHVITGSLLFCNSPNLVLFDLGAMHSFISISHAKSLDHEIEPLEGGILVSTTSDEAFMVEFVCRNC
        P E   G      + RP+ QGKV  MT  +A++   VITG++L CN P  VLFDLGA HSF+S      L+  +EPL  G+ + T   +  +V  V RNC
Subjt:  PNEAEEGPSGIKGLRRPKSQGKVCTMTLIKAKNRLHVITGSLLFCNSPNLVLFDLGAMHSFISISHAKSLDHEIEPLEGGILVSTTSDEAFMVEFVCRNC

Query:  EIRIKNVTLKVDFILFELHELDVILAMDFL
        E+ ++ ++L VD +  EL  LDVIL MDFL
Subjt:  EIRIKNVTLKVDFILFELHELDVILAMDFL

KAA0066350.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.7e-1943.08Show/hide
Query:  PNEAEEGPSGIKGLRRPKSQGKVCTMTLIKAKNRLHVITGSLLFCNSPNLVLFDLGAMHSFISISHAKSLDHEIEPLEGGILVSTTSDEAFMVEFVCRNC
        P E   G    + + RP+ QGKV  MT  +A++   VITG++L CN P  +LFD GA HSF+S      L+  +EPL  G+ + T   +  +V  V RNC
Subjt:  PNEAEEGPSGIKGLRRPKSQGKVCTMTLIKAKNRLHVITGSLLFCNSPNLVLFDLGAMHSFISISHAKSLDHEIEPLEGGILVSTTSDEAFMVEFVCRNC

Query:  EIRIKNVTLKVDFILFELHELDVILAMDFL
        E+ ++ ++L VDF+  EL  LDVIL MDFL
Subjt:  EIRIKNVTLKVDFILFELHELDVILAMDFL

TYK11035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.2e-1944.62Show/hide
Query:  PNEAEEGPSGIKGLRRPKSQGKVCTMTLIKAKNRLHVITGSLLFCNSPNLVLFDLGAMHSFISISHAKSLDHEIEPLEGGILVSTTSDEAFMVEFVCRNC
        P E   G    + +RRPK QGKV  MT  +A++   VITG++L CN P  VLFD GA HSF+S +    L+  ++PL  G+ + T   +  +V  V RNC
Subjt:  PNEAEEGPSGIKGLRRPKSQGKVCTMTLIKAKNRLHVITGSLLFCNSPNLVLFDLGAMHSFISISHAKSLDHEIEPLEGGILVSTTSDEAFMVEFVCRNC

Query:  EIRIKNVTLKVDFILFELHELDVILAMDFL
        EI ++ ++L VD +  EL  LDVIL MDFL
Subjt:  EIRIKNVTLKVDFILFELHELDVILAMDFL

TrEMBL top hitse value%identityAlignment
A0A5A7U430 CCHC-type domain-containing protein1.0e-1946.09Show/hide
Query:  EGPSGI--KG-LRRPKSQGKVCTMTLIKAKNRLHVITGSLLFCNSPNLVLFDLGAMHSFISISHAKSLDHEIEPLEGGILVSTTSDEAFMVEFVCRNCEI
        EG SG   KG + RP+ QGKV  MT  +A++ L VITG++L CN P  +LFDLGA HSF+S      L+  +EPL  G+ + T   +  +V  V RNCE+
Subjt:  EGPSGI--KG-LRRPKSQGKVCTMTLIKAKNRLHVITGSLLFCNSPNLVLFDLGAMHSFISISHAKSLDHEIEPLEGGILVSTTSDEAFMVEFVCRNCEI

Query:  RIKNVTLKVDFILFELHELDVILAMDFL
         +++++L VD +  EL  LDVIL M+FL
Subjt:  RIKNVTLKVDFILFELHELDVILAMDFL

A0A5A7UZA0 CCHC-type domain-containing protein6.1e-2045.26Show/hide
Query:  QPYHPNEAEEGPSGI--KG-LRRPKSQGKVCTMTLIKAKNRLHVITGSLLFCNSPNLVLFDLGAMHSFISISHAKSLDHEIEPLEGGILVSTTSDEAFMV
        QP H  +  EG SG   KG + RP+ QGKV  MT  +A++   VITG++L CN P  VLFD GA HSF+S      L+  +EPL  G+ + T   +  +V
Subjt:  QPYHPNEAEEGPSGI--KG-LRRPKSQGKVCTMTLIKAKNRLHVITGSLLFCNSPNLVLFDLGAMHSFISISHAKSLDHEIEPLEGGILVSTTSDEAFMV

Query:  EFVCRNCEIRIKNVTLKVDFILFELHELDVILAMDFL
          V RNCE+ ++ ++L VD +  EL  LDVIL MDFL
Subjt:  EFVCRNCEIRIKNVTLKVDFILFELHELDVILAMDFL

A0A5A7V0R0 Reverse transcriptase2.3e-1943.85Show/hide
Query:  PNEAEEGPSGIKGLRRPKSQGKVCTMTLIKAKNRLHVITGSLLFCNSPNLVLFDLGAMHSFISISHAKSLDHEIEPLEGGILVSTTSDEAFMVEFVCRNC
        P E   G      + RP+ QGKV  MT  +A++   VITG++L CN P  VLFDLGA HSF+S      L+  +EPL  G+ + T   +  +V  V RNC
Subjt:  PNEAEEGPSGIKGLRRPKSQGKVCTMTLIKAKNRLHVITGSLLFCNSPNLVLFDLGAMHSFISISHAKSLDHEIEPLEGGILVSTTSDEAFMVEFVCRNC

Query:  EIRIKNVTLKVDFILFELHELDVILAMDFL
        E+ ++ ++L VD +  EL  LDVIL MDFL
Subjt:  EIRIKNVTLKVDFILFELHELDVILAMDFL

A0A5A7VGR2 Reverse transcriptase1.8e-1943.08Show/hide
Query:  PNEAEEGPSGIKGLRRPKSQGKVCTMTLIKAKNRLHVITGSLLFCNSPNLVLFDLGAMHSFISISHAKSLDHEIEPLEGGILVSTTSDEAFMVEFVCRNC
        P E   G    + + RP+ QGKV  MT  +A++   VITG++L CN P  +LFD GA HSF+S      L+  +EPL  G+ + T   +  +V  V RNC
Subjt:  PNEAEEGPSGIKGLRRPKSQGKVCTMTLIKAKNRLHVITGSLLFCNSPNLVLFDLGAMHSFISISHAKSLDHEIEPLEGGILVSTTSDEAFMVEFVCRNC

Query:  EIRIKNVTLKVDFILFELHELDVILAMDFL
        E+ ++ ++L VDF+  EL  LDVIL MDFL
Subjt:  EIRIKNVTLKVDFILFELHELDVILAMDFL

A0A5D3CHM7 DNA/RNA polymerases superfamily protein1.0e-1944.62Show/hide
Query:  PNEAEEGPSGIKGLRRPKSQGKVCTMTLIKAKNRLHVITGSLLFCNSPNLVLFDLGAMHSFISISHAKSLDHEIEPLEGGILVSTTSDEAFMVEFVCRNC
        P E   G    + +RRPK QGKV  MT  +A++   VITG++L CN P  VLFD GA HSF+S +    L+  ++PL  G+ + T   +  +V  V RNC
Subjt:  PNEAEEGPSGIKGLRRPKSQGKVCTMTLIKAKNRLHVITGSLLFCNSPNLVLFDLGAMHSFISISHAKSLDHEIEPLEGGILVSTTSDEAFMVEFVCRNC

Query:  EIRIKNVTLKVDFILFELHELDVILAMDFL
        EI ++ ++L VD +  EL  LDVIL MDFL
Subjt:  EIRIKNVTLKVDFILFELHELDVILAMDFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCAACCCTATCATCCAAATGAAGCTGAAGAAGGACCCAGTGGAATCAAAGGACTTAGGAGACCAAAGTCCCAAGGGAAGGTATGCACGATGACGCTGATTAAGGC
TAAGAACAGACTGCATGTGATTACTGGTTCGTTACTATTTTGTAACTCCCCTAATCTAGTGTTGTTTGATTTAGGAGCTATGCACTCTTTCATTTCTATATCACATGCAA
AGTCTCTAGACCATGAGATAGAACCTTTAGAAGGTGGAATATTGGTTAGCACGACTTCAGATGAGGCGTTTATGGTAGAGTTTGTATGTAGGAATTGCGAGATAAGGATT
AAAAATGTCACGTTGAAGGTGGACTTTATATTATTTGAGCTTCATGAGCTAGATGTGATCTTGGCAATGGATTTCCTTAACAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACCAACCCTATCATCCAAATGAAGCTGAAGAAGGACCCAGTGGAATCAAAGGACTTAGGAGACCAAAGTCCCAAGGGAAGGTATGCACGATGACGCTGATTAAGGC
TAAGAACAGACTGCATGTGATTACTGGTTCGTTACTATTTTGTAACTCCCCTAATCTAGTGTTGTTTGATTTAGGAGCTATGCACTCTTTCATTTCTATATCACATGCAA
AGTCTCTAGACCATGAGATAGAACCTTTAGAAGGTGGAATATTGGTTAGCACGACTTCAGATGAGGCGTTTATGGTAGAGTTTGTATGTAGGAATTGCGAGATAAGGATT
AAAAATGTCACGTTGAAGGTGGACTTTATATTATTTGAGCTTCATGAGCTAGATGTGATCTTGGCAATGGATTTCCTTAACAAGTAA
Protein sequenceShow/hide protein sequence
MNQPYHPNEAEEGPSGIKGLRRPKSQGKVCTMTLIKAKNRLHVITGSLLFCNSPNLVLFDLGAMHSFISISHAKSLDHEIEPLEGGILVSTTSDEAFMVEFVCRNCEIRI
KNVTLKVDFILFELHELDVILAMDFLNK