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CSPI05G01390 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G01390
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationChr5:1915613..1916109
RNA-Seq ExpressionCSPI05G01390
SyntenyCSPI05G01390
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057703.1 putative mitochondrial protein [Cucumis melo var. makuwa]7.4e-2041.98Show/hide
Query:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYLNMELLDKISYWLLHNFT-----------
        M+P+ +LST+SG+ +D+E A+ Y+RL+GRL YL    +RP   ++V   L++ +A+    HL AVH+LL+YL       I  W    F            
Subjt:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYLNMELLDKISYWLLHNFT-----------

Query:  ------SFIG---------ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHIP
              S  G         +SWKTKKQ T SRSS EA+YR L SVS EITWL H+L DL IP
Subjt:  ------SFIG---------ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHIP

KAA0065481.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.8e-1841.98Show/hide
Query:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYLNMELLDKISYWLLHNFT-----------
        M+P+ +LST+SG  +D+E A+ Y RL+GRL YL    +RP   + V   L++ + K    H+ A H+LL+YL       I  W    F            
Subjt:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYLNMELLDKISYWLLHNFT-----------

Query:  ------SFIG---------ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHIP
              S  G         +SWKTKKQ TVSRSS EAEYRALASVS EITWL H+L +  IP
Subjt:  ------SFIG---------ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHIP

XP_016902992.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]7.4e-2041.98Show/hide
Query:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYLNMELLDKISYWLLHNFT-----------
        M+P+ +LST+SG+ +D+E A+ Y+RL+GRL YL    +RP   ++V   L++ +A+    HL AVH+LL+YL       I  W    F            
Subjt:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYLNMELLDKISYWLLHNFT-----------

Query:  ------SFIG---------ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHIP
              S  G         +SWKTKKQ T SRSS EA+YR L SVS EITWL H+L DL IP
Subjt:  ------SFIG---------ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHIP

XP_031744313.1 uncharacterized protein LOC116404977 [Cucumis sativus]3.4e-1742.24Show/hide
Query:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYLN--------MELLDK-------ISYW--
        M PN KL  S G  + EE AT Y+RL+GRL YL    +RP   F V   L++ + K +  HLDA H+LLKYL         ++ +D        ++ W  
Subjt:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYLN--------MELLDK-------ISYW--

Query:  ------LLHNFTSFIG---ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHI
               +  F  F+G   ISWK+KKQPTVSRSS EAEYRALASV+ E+ W+  +L D  +
Subjt:  ------LLHNFTSFIG---ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHI

XP_031745923.1 uncharacterized protein LOC116406346 [Cucumis sativus]4.5e-1742.86Show/hide
Query:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYLNME-----LLDKISYWLLHNFTS-----
        M PN KL  S G  + EE AT Y+RL+GRL YL    +RP   F V   L++ + K +  HLDA H+LLKYL        L+  I  + L  F       
Subjt:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYLNME-----LLDKISYWLLHNFTS-----

Query:  -------------FIG---ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHI
                     F+G   ISWK+KKQPTVSRSS EAEYRAL SV+ E+ W+  +L D  I
Subjt:  -------------FIG---ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHI

TrEMBL top hitse value%identityAlignment
A0A1R3I9P8 No apical meristem (NAM) protein4.1e-1642.24Show/hide
Query:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYL------------NMELL---DKISYW--
        ++P  +LS   G P+  E +T Y++L+G+L YL   +TRP  + FV   LA+ + K +N HL AVH +L+YL            N EL       S W  
Subjt:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYL------------NMELL---DKISYW--

Query:  ------LLHNFTSFIG---ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHI
               +  F  F+G   ISWK+KKQ TVSRSS EAEYRALAS +CEI W+N++L D H+
Subjt:  ------LLHNFTSFIG---ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHI

A0A1S3VFP0 uncharacterized protein LOC1067746489.1e-1643.61Show/hide
Query:  KLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYLNMELLDKISYWLLHNFTSFIG---ISWKTKKQP
        +LSTSSG+P+ + S+  Y+RL+GRL YL   +TRP  + +V  +L+K ++  +  H  A   +L YL               F+ +IG   ISW++KKQP
Subjt:  KLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYLNMELLDKISYWLLHNFTSFIG---ISWKTKKQP

Query:  TVSRSSIEAEYRALASVSCEITWLNHVLNDLHI
        TVSRSS +AEYR LA+ +CE+ WL ++L DLHI
Subjt:  TVSRSSIEAEYRALASVSCEITWLNHVLNDLHI

A0A1S4E444 uncharacterized mitochondrial protein AtMg00810-like3.6e-2041.98Show/hide
Query:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYLNMELLDKISYWLLHNFT-----------
        M+P+ +LST+SG+ +D+E A+ Y+RL+GRL YL    +RP   ++V   L++ +A+    HL AVH+LL+YL       I  W    F            
Subjt:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYLNMELLDKISYWLLHNFT-----------

Query:  ------SFIG---------ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHIP
              S  G         +SWKTKKQ T SRSS EA+YR L SVS EITWL H+L DL IP
Subjt:  ------SFIG---------ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHIP

A0A5D3CBP3 Putative mitochondrial protein8.8e-1941.98Show/hide
Query:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYLNMELLDKISYWLLHNFT-----------
        M+P+ +LST+SG  +D+E A+ Y RL+GRL YL    +RP   + V   L++ + K    H+ A H+LL+YL       I  W    F            
Subjt:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYLNMELLDKISYWLLHNFT-----------

Query:  ------SFIG---------ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHIP
              S  G         +SWKTKKQ TVSRSS EAEYRALASVS EITWL H+L +  IP
Subjt:  ------SFIG---------ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHIP

A0A5D3DVP4 Putative mitochondrial protein3.6e-2041.98Show/hide
Query:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYLNMELLDKISYWLLHNFT-----------
        M+P+ +LST+SG+ +D+E A+ Y+RL+GRL YL    +RP   ++V   L++ +A+    HL AVH+LL+YL       I  W    F            
Subjt:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYLNMELLDKISYWLLHNFT-----------

Query:  ------SFIG---------ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHIP
              S  G         +SWKTKKQ T SRSS EA+YR L SVS EITWL H+L DL IP
Subjt:  ------SFIG---------ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHIP

SwissProt top hitse value%identityAlignment
P92519 Uncharacterized mitochondrial protein AtMg008103.7e-0660.98Show/hide
Query:  FTSFIG---ISWKTKKQPTVSRSSIEAEYRALASVSCEITW
        F +F+G   ISW  K+QPTVSRSS E EYRALA  + E+TW
Subjt:  FTSFIG---ISWKTKKQPTVSRSSIEAEYRALASVSCEITW

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.0e-0732.3Show/hide
Query:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYL-------------NMELL----------
        M P+ KLS  SG+ + +   T Y+ +VG L YL    TRP  + +    L++ +   +  HL A+  +L+YL             N   L          
Subjt:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYL-------------NMELL----------

Query:  DKISYWLLHNFTSFIG---ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHI
        DK  Y   + +  ++G   ISW +KKQ  V RSS EAEYR++A+ S E+ W+  +L +L I
Subjt:  DKISYWLLHNFTSFIG---ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHI

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.6e-0440.98Show/hide
Query:  DKISYWLLHNFTSFIG---ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHI
        D   Y   + +  ++G   ISW +KKQ  V RSS EAEYR++A+ S E+ W+  +L +L I
Subjt:  DKISYWLLHNFTSFIG---ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHI

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 85.3e-0829.59Show/hide
Query:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSN-------VHLDAVHYLLKY----------------LNMELL
        M P+   S  SG   D   A  Y+RL+GRL YL              ++++ +V KLS         H  AV  +L Y                + +++ 
Subjt:  MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSN-------VHLDAVHYLLKY----------------LNMELL

Query:  DKISYW-------LLHNFTSFIG---ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHIP
           S+          + +  F+G   ISWK+KKQ  VS+SS EAEYRAL+  + E+ WL     +L +P
Subjt:  DKISYW-------LLHNFTSFIG---ISWKTKKQPTVSRSSIEAEYRALASVSCEITWLNHVLNDLHIP

ATMG00810.1 DNA/RNA polymerases superfamily protein2.6e-0760.98Show/hide
Query:  FTSFIG---ISWKTKKQPTVSRSSIEAEYRALASVSCEITW
        F +F+G   ISW  K+QPTVSRSS E EYRALA  + E+TW
Subjt:  FTSFIG---ISWKTKKQPTVSRSSIEAEYRALASVSCEITW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACCAAATCAGAAACTGTCCACATCTTCTGGTAGCCCAATTGATGAAGAATCTGCTACTCTTTATCAAAGACTTGTTGGTAGGTTATTCTACTTATACAGATTTTC
CACCCGGCCACGACGTTTGTTTTTTGTGTTCGTAAACTTGGCCAAATCTGTGGCTAAACTGAGCAATGTTCATCTTGATGCTGTTCACTATCTGTTAAAATATTTGAATA
TGGAACTTCTGGATAAGATCAGTTACTGGCTTTTGCATAATTTTACGAGCTTCATTGGTATATCTTGGAAAACAAAGAAACAACCAACTGTTTCACGATCCTCAATTGAA
GCCGAGTATCGAGCTCTTGCATCTGTCTCTTGTGAAATCACTTGGTTGAATCATGTTCTCAATGATCTACATATACCTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATACCAAATCAGAAACTGTCCACATCTTCTGGTAGCCCAATTGATGAAGAATCTGCTACTCTTTATCAAAGACTTGTTGGTAGGTTATTCTACTTATACAGATTTTC
CACCCGGCCACGACGTTTGTTTTTTGTGTTCGTAAACTTGGCCAAATCTGTGGCTAAACTGAGCAATGTTCATCTTGATGCTGTTCACTATCTGTTAAAATATTTGAATA
TGGAACTTCTGGATAAGATCAGTTACTGGCTTTTGCATAATTTTACGAGCTTCATTGGTATATCTTGGAAAACAAAGAAACAACCAACTGTTTCACGATCCTCAATTGAA
GCCGAGTATCGAGCTCTTGCATCTGTCTCTTGTGAAATCACTTGGTTGAATCATGTTCTCAATGATCTACATATACCTTCTTGA
Protein sequenceShow/hide protein sequence
MIPNQKLSTSSGSPIDEESATLYQRLVGRLFYLYRFSTRPRRLFFVFVNLAKSVAKLSNVHLDAVHYLLKYLNMELLDKISYWLLHNFTSFIGISWKTKKQPTVSRSSIE
AEYRALASVSCEITWLNHVLNDLHIPS