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CSPI05G01760 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G01760
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposon protein
Genome locationChr5:2414113..2414439
RNA-Seq ExpressionCSPI05G01760
SyntenyCSPI05G01760
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060319.1 retrotransposon protein [Cucumis melo var. makuwa]5.7e-0737.37Show/hide
Query:  MVKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLASEVISFSK-----------KEKRKI
        +V Q  +  E+ + F  YSA LP +AE+V ++TF+IGL+  +KA+++   P  LE  M++AQ++ D +LALKLA   +   K           KEKR++
Subjt:  MVKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLASEVISFSK-----------KEKRKI

XP_031742100.1 uncharacterized protein LOC116404055 [Cucumis sativus]7.4e-0736.56Show/hide
Query:  VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLASEVISF--SKKEKRKIGFRG
        +KQ  +  E+ + F TYSA LP +AE+V  + F+ GL+ +++A++I+  P  LE  M++AQ+  D ++ALKLA E +     K+ +    F+G
Subjt:  VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLASEVISF--SKKEKRKIGFRG

XP_031745419.1 uncharacterized protein LOC116405630 [Cucumis sativus]7.4e-0736.56Show/hide
Query:  VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLASEVISF--SKKEKRKIGFRG
        +KQ  +  E+ + F TYSA LP +AE+V  + F+ GL+ +++A++I+  P  LE  M++AQ+  D ++ALKLA E +     K+ +    F+G
Subjt:  VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLASEVISF--SKKEKRKIGFRG

XP_031745472.1 uncharacterized protein K02A2.6-like [Cucumis sativus]1.5e-0736.56Show/hide
Query:  VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLASEVISF--SKKEKRKIGFRG
        +KQ  +  E+ + F TYSA LP +AE+V  + F+ GL+ +++A++I+  P  LE  M++AQ++ D ++ALKLA E +     K+ +    F+G
Subjt:  VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLASEVISF--SKKEKRKIGFRG

XP_031745726.1 uncharacterized protein K02A2.6-like [Cucumis sativus]1.5e-0736.56Show/hide
Query:  VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLASEVISF--SKKEKRKIGFRG
        +KQ  +  E+ + F TYSA LP +AE+V  + F+ GL+ +++A++I+  P  LE  M++AQ++ D ++ALKLA E +     K+ +    F+G
Subjt:  VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLASEVISF--SKKEKRKIGFRG

TrEMBL top hitse value%identityAlignment
A0A5A7T8C0 Ty3/gypsy retrotransposon protein4.0e-0639.73Show/hide
Query:  VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLA
        ++Q  +  E+ + F TYSA LP +AE+V  + F+ GL+ +++A++I+  P  LE  M++AQ++ D +LALKL+
Subjt:  VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLA

A0A5A7V689 Retrotransposon protein3.0e-0641.1Show/hide
Query:  VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLA
        ++Q  +  ++ + F TYSA LP +AE+V  + F+ GL+ +++A++I+  P  LE  M++AQ+I D +LALKLA
Subjt:  VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLA

A0A5D3DFL3 Retrotransposon protein2.7e-0737.37Show/hide
Query:  MVKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLASEVISFSK-----------KEKRKI
        +V Q  +  E+ + F  YSA LP +AE+V ++TF+IGL+  +KA+++   P  LE  M++AQ++ D +LALKLA   +   K           KEKR++
Subjt:  MVKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLASEVISFSK-----------KEKRKI

A0A5D3DTH7 Retrotransposon protein3.0e-0639.73Show/hide
Query:  VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLA
        +KQ     ++ + F  YSA LP++AE+V  + F+IGL+ N++A++    P+ LE+ M++AQ++ D  LA+KLA
Subjt:  VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLA

A0A6J1D5H9 uncharacterized protein LOC1110174764.7e-0740Show/hide
Query:  VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLASE
        +KQ  ++ E+++ FE  SA LP+L++ V + TF+ GL   +++K++  EP GLE IM +AQ++ED   A++ A E
Subjt:  VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLASE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAACAAACTGACACCATATTTGAGTTTAGGCAGCTATTCGAAACCTACTCAGCGTCGTTACCGAAGTTGGCTGAAAATGTCCACCAGAATACGTTTATGATTGG
GCTTCAACAAAATATTAAGGCTAAGATTATCACCAATGAACCGATTGGGCTGGAAAGTATCATGCAACAAGCCCAAATTATTGAAGACCATCATTTAGCCCTCAAATTGG
CTTCAGAGGTCATATCCTTTTCAAAAAAAGAAAAAAGAAAAATTGGCTTCAGAGGCATTGGGTACCGAGCCCCAAAAACAATGCATGGAATCTGCCCAATATCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAACAAACTGACACCATATTTGAGTTTAGGCAGCTATTCGAAACCTACTCAGCGTCGTTACCGAAGTTGGCTGAAAATGTCCACCAGAATACGTTTATGATTGG
GCTTCAACAAAATATTAAGGCTAAGATTATCACCAATGAACCGATTGGGCTGGAAAGTATCATGCAACAAGCCCAAATTATTGAAGACCATCATTTAGCCCTCAAATTGG
CTTCAGAGGTCATATCCTTTTCAAAAAAAGAAAAAAGAAAAATTGGCTTCAGAGGCATTGGGTACCGAGCCCCAAAAACAATGCATGGAATCTGCCCAATATCTTAG
Protein sequenceShow/hide protein sequence
MVKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLASEVISFSKKEKRKIGFRGIGYRAPKTMHGICPIS