CuGenDBv2

Gene ID	CSPI05G01790
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	nuclear pore complex protein NUP155
Genome location	Chr5:2461130..2462302
RNA-Seq Expression	CSPI05G01790
Synteny	CSPI05G01790
Gene Ontology terms	GO:0000972 - transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery (biological process) GO:0006405 - RNA export from nucleus (biological process) GO:0006606 - protein import into nucleus (biological process) GO:0036228 - protein localization to nuclear inner membrane (biological process) GO:0044611 - nuclear pore inner ring (cellular component) GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domains	IPR004870 - Nucleoporin, Nup155-like IPR014908 - Nucleoporin, Nup133/Nup155-like, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040978.1 nuclear pore complex protein NUP155 [Cucumis melo var. makuwa]

1.2e-46

97.94

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Query:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS
        MALDEDVVLRDVTNAG+VIT+RIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS
Subjt:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS

TYK20328.1 nuclear pore complex protein NUP155 [Cucumis melo var. makuwa]

1.2e-46

97.94

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Query:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS
        MALDEDVVLRDVTNAG+VIT+RIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS
Subjt:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS

XP_008464720.1 PREDICTED: nuclear pore complex protein NUP155 [Cucumis melo]

1.2e-46

97.94

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Query:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS
        MALDEDVVLRDVTNAG+VIT+RIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS
Subjt:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS

XP_011654516.2 nuclear pore complex protein NUP155 isoform X1 [Cucumis sativus]

2.4e-47

100

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Query:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS
        MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS
Subjt:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS

XP_038892008.1 nuclear pore complex protein NUP155 isoform X1 [Benincasa hispida]

3.4e-46

96.91

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Query:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS
        MALDEDVVLRDVTNAGVVI+DRI+REVATQLDLEE+LEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS
Subjt:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KJ04 Nucleoporin_N domain-containing protein

1.1e-47

100

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Query:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS
        MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS
Subjt:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS

A0A1S3CM39 nuclear pore complex protein NUP155

5.7e-47

97.94

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Query:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS
        MALDEDVVLRDVTNAG+VIT+RIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS
Subjt:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS

A0A5A7TDD9 Nuclear pore complex protein NUP155

5.7e-47

97.94

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Query:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS
        MALDEDVVLRDVTNAG+VIT+RIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS
Subjt:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS

A0A5D3D9Z9 Nuclear pore complex protein NUP155

5.7e-47

97.94

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Query:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS
        MALDEDVVLRDVTNAG+VIT+RIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS
Subjt:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS

A0A6J1DZ63 nuclear pore complex protein NUP155

5.3e-45

94.85

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Query:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS
        MALDEDVVLRDVTNAGVVI+DRIARE ATQLDLEE+LEASRYA+DPYTTHPREWPPLVEVVDTWELP VLIERYNAAGGEGTALCGIFPEIRRAWAS
Subjt:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS

SwissProt top hits

e value

%identity

Alignment

F4HXV6 Nuclear pore complex protein NUP155

1.1e-39

77.32

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Query:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS
        M+ D+++V+RDVT+AG+ I DRI RE A+QLDLEE+LEASRYA+ PY+THPREWPPL+EV +TWELP VLIERYN AGGEGTALCGIFPEIRRAWAS
Subjt:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS

Arabidopsis top hits

e value

%identity

Alignment

AT1G14850.1 nucleoporin 155

7.8e-41

77.32

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Query:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS
        M+ D+++V+RDVT+AG+ I DRI RE A+QLDLEE+LEASRYA+ PY+THPREWPPL+EV +TWELP VLIERYN AGGEGTALCGIFPEIRRAWAS
Subjt:  MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWAS

Sequences

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CDS sequence

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ATGGCATTGGATGAGGACGTCGTCCTGCGCGATGTCACCAATGCTGGTGTTGTCATCACTGACCGCATTGCCAGAGAAGTTGCCACCCAACTTGATCTGGAGGAATCGCT
GGAAGCTTCAAGATACGCTACTGATCCCTATACAACCCACCCCAGGGAGTGGCCTCCTCTAGTGGAAGTGGTGGATACTTGGGAGTTACCTCCAGTGCTCATAGAAAGAT
ATAATGCTGCTGGTGGGGAAGGAACTGCCTTATGTGGAATATTTCCAGAGATACGAAGAGCTTGGGCATCTTCGTTCTTTGGTGCTTTGTTGTCATTTCTTTTGGTGCTT
TTGTTTTCTTCCTCTGTTTGTGTTGGAACTCCAGTATTTAGTATTTCAATAGTAAACTTTATTGATGAATAA

mRNA sequence

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Protein sequence

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MALDEDVVLRDVTNAGVVITDRIAREVATQLDLEESLEASRYATDPYTTHPREWPPLVEVVDTWELPPVLIERYNAAGGEGTALCGIFPEIRRAWASSFFGALLSFLLVL
LFSSSVCVGTPVFSISIVNFIDE

CSPI05G01790 (gene) of Cucumber (PI 183967) v1 genome