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CSPI05G01850 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G01850
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposon protein
Genome locationChr5:2508282..2508596
RNA-Seq ExpressionCSPI05G01850
SyntenyCSPI05G01850
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033487.1 uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]4.4e-2277.27Show/hide
Query:  MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMD
        ++KPFPYFYDL+IVFGRDRAT G+CKTP+EMG Q A+DTEEDDM INLED DI NPHGLE PS  D
Subjt:  MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMD

KAA0060670.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-2276.47Show/hide
Query:  MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMDPL
        ++KPFPYFYDL+I+FGRDRAT GRCKTP+EMG QIA+DTEEDDM+INLE+ DI NPHGLE PS  D L
Subjt:  MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMDPL

KAA0067273.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-2381.82Show/hide
Query:  MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMD
        ++K FPYFYDLKI+FGRDRAT GRCKTPIEMGLQIA+DTEEDDM+INLED DI NPHGLE PS  D
Subjt:  MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMD

TYK10886.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-2380.3Show/hide
Query:  MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMD
        ++K FPYFYDLKI+FGRDRAT GRCKTP+EMGLQIA+DTEEDDM+INLED DI NPHGLE PS  D
Subjt:  MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMD

XP_008460440.1 PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo]1.8e-2381.82Show/hide
Query:  MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMD
        ++K FPYFYDLKI+FGRDRAT GRCKTPIEMGLQIA+DTEEDDM+INLED DI NPHGLE PS  D
Subjt:  MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMD

TrEMBL top hitse value%identityAlignment
A0A1S3CC17 uncharacterized protein LOC1034992488.6e-2481.82Show/hide
Query:  MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMD
        ++K FPYFYDLKI+FGRDRAT GRCKTPIEMGLQIA+DTEEDDM+INLED DI NPHGLE PS  D
Subjt:  MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMD

A0A5A7SW62 Myb_DNA-bind_3 domain-containing protein2.1e-2277.27Show/hide
Query:  MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMD
        ++KPFPYFYDL+IVFGRDRAT G+CKTP+EMG Q A+DTEEDDM INLED DI NPHGLE PS  D
Subjt:  MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMD

A0A5A7VGQ0 Retrotransposon protein8.6e-2481.82Show/hide
Query:  MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMD
        ++K FPYFYDLKI+FGRDRAT GRCKTPIEMGLQIA+DTEEDDM+INLED DI NPHGLE PS  D
Subjt:  MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMD

A0A5D3CKC1 Retrotransposon protein1.1e-2380.3Show/hide
Query:  MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMD
        ++K FPYFYDLKI+FGRDRAT GRCKTP+EMGLQIA+DTEEDDM+INLED DI NPHGLE PS  D
Subjt:  MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMD

A0A5D3DJR9 Retrotransposon protein5.6e-2376.47Show/hide
Query:  MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMDPL
        ++KPFPYFYDL+I+FGRDRAT GRCKTP+EMG QIA+DTEEDDM+INLE+ DI NPHGLE PS  D L
Subjt:  MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMDPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAAACCATTTCCTTATTTCTATGACTTGAAAATTGTGTTTGGAAGAGATAGGGCTACTAGTGGTAGATGTAAGACACCCATTGAAATGGGCTTACAAATTGCAAA
AGATACTGAGGAAGATGACATGAACATTAATCTCGAAGATTTAGATATTTCAAATCCACATGGACTCGAGCGACCATCGTGGATGGATCCACTCCAACAAGTTTGCGAGA
AGCTTCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAAACCATTTCCTTATTTCTATGACTTGAAAATTGTGTTTGGAAGAGATAGGGCTACTAGTGGTAGATGTAAGACACCCATTGAAATGGGCTTACAAATTGCAAA
AGATACTGAGGAAGATGACATGAACATTAATCTCGAAGATTTAGATATTTCAAATCCACATGGACTCGAGCGACCATCGTGGATGGATCCACTCCAACAAGTTTGCGAGA
AGCTTCCATGA
Protein sequenceShow/hide protein sequence
MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMDPLQQVCEKLP