CuGenDBv2

Gene ID	CSPI05G02890
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ubiquitin
Genome location	Chr5:3366124..3367968
RNA-Seq Expression	CSPI05G02890
Synteny	CSPI05G02890
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0016567 - protein ubiquitination (biological process) GO:0019941 - modification-dependent protein catabolic process (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0031386 - protein tag (molecular function) GO:0031625 - ubiquitin protein ligase binding (molecular function) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR038587 - Ribosomal protein L40e superfamily IPR029071 - Ubiquitin-like domain superfamily IPR019956 - Ubiquitin domain IPR000626 - Ubiquitin-like domain IPR001975 - Ribosomal protein L40e IPR011332 - Zinc-binding ribosomal protein IPR019954 - Ubiquitin conserved site

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

EOY23660.1 Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao]

3.5e-64

100

Show/hide

Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK
        ARLHPRAVNCRKKKCGHSNQLRPKKKIK
Subjt:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK

KAG2289585.1 hypothetical protein Bca52824_049189 [Brassica carinata]

3.5e-64

100

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Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK
        ARLHPRAVNCRKKKCGHSNQLRPKKKIK
Subjt:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK

NP_001295699.1 ubiquitin-60S ribosomal protein L40-like [Jatropha curcas]

3.5e-64

100

Show/hide

Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK
        ARLHPRAVNCRKKKCGHSNQLRPKKKIK
Subjt:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK

VDC70205.1 unnamed protein product [Brassica rapa]

3.5e-64

100

Show/hide

Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK
        ARLHPRAVNCRKKKCGHSNQLRPKKKIK
Subjt:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK

XP_022742755.1 ubiquitin-60S ribosomal protein L40-like [Durio zibethinus]

3.5e-64

100

Show/hide

Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK
        ARLHPRAVNCRKKKCGHSNQLRPKKKIK
Subjt:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK

TrEMBL top hits

e value

%identity

Alignment

A0A1U7X7W2 Ubiquitin

1.7e-64

100

Show/hide

Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK
        ARLHPRAVNCRKKKCGHSNQLRPKKKIK
Subjt:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK

A0A1U8NH30 Ubiquitin

1.7e-64

100

Show/hide

Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK
        ARLHPRAVNCRKKKCGHSNQLRPKKKIK
Subjt:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK

A0A2G9GFM2 Ubiquitin

1.7e-64

100

Show/hide

Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK
        ARLHPRAVNCRKKKCGHSNQLRPKKKIK
Subjt:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK

A0A5D2BB53 Ubiquitin

1.7e-64

100

Show/hide

Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK
        ARLHPRAVNCRKKKCGHSNQLRPKKKIK
Subjt:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK

A0A6J1HY41 Ubiquitin

1.7e-64

100

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Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK
        ARLHPRAVNCRKKKCGHSNQLRPKKKIK
Subjt:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK

SwissProt top hits

e value

%identity

Alignment

B9DHA6 Ubiquitin-60S ribosomal protein L40-1

1.7e-66

99.22

Show/hide

Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK
        ARLHPRAVNCRKKKCGHSNQLRPKKKIK
Subjt:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK

P0CH34 Ubiquitin-60S ribosomal protein L40-1

1.7e-66

99.22

Show/hide

Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSL ALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK
        ARLHPRAVNCRKKKCGHSNQLRPKKKIK
Subjt:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK

P0CH35 Ubiquitin-60S ribosomal protein L40-2

1.7e-66

99.22

Show/hide

Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSL ALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK
        ARLHPRAVNCRKKKCGHSNQLRPKKKIK
Subjt:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK

P49636 Ubiquitin-60S ribosomal protein L40

1.0e-66

99.22

Show/hide

Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK
        ARLHPRAVNCR+KKCGHSNQLRPKKKIK
Subjt:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK

Q42202 Ubiquitin-60S ribosomal protein L40-2

1.7e-66

99.22

Show/hide

Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK
        ARLHPRAVNCRKKKCGHSNQLRPKKKIK
Subjt:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK

Arabidopsis top hits

e value

%identity

Alignment

AT1G65350.1 ubiquitin 13

1.1e-36

98.7

Show/hide

Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI

AT2G36170.1 Ubiquitin supergroup;Ribosomal protein L40e

1.2e-67

99.22

Show/hide

Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK
        ARLHPRAVNCRKKKCGHSNQLRPKKKIK
Subjt:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK

AT3G52590.1 ubiquitin extension protein 1

1.2e-67

99.22

Show/hide

Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCY
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCY

Query:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK
        ARLHPRAVNCRKKKCGHSNQLRPKKKIK
Subjt:  ARLHPRAVNCRKKKCGHSNQLRPKKKIK

AT4G02890.1 Ubiquitin family protein

1.1e-36

98.7

Show/hide

Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI

AT4G05320.2 polyubiquitin 10

1.1e-36

98.7

Show/hide

Query:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI
        MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG+
Subjt:  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACCATTACGCTGGAAGTTGAGTCCAGCGACACCATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATTCC
CCCCGATCAGCAACGGCTTATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCACTCTGGCCGACTACAACATCCAGAAAGAGTCAACACTGCATTTGGTTCTAAGGCTTC
GTGGTGGGATTATTGAGCCATCTTTGATGGCATTGGCCAGGAAATATAACCAGGACAAGATGATCTGCCGCAAATGTTATGCACGCCTGCATCCCCGTGCTGTCAACTGC
CGTAAGAAGAAATGTGGTCACAGCAATCAGCTGAGGCCAAAGAAGAAAATCAAGTAG

mRNA sequence

Show/hide mRNA sequence

AAACGTAAAACCCTCAAACTCATCAAGGAGGCGCCGAGGAAAACTAGAGGATCAAGAAAATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACCATTACGCTGGAAGTT
GAGTCCAGCGACACCATTGACAATGTCAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCCGATCAGCAACGGCTTATCTTTGCCGGAAAGCAGCTCGAGGATGGCCG
CACTCTGGCCGACTACAACATCCAGAAAGAGTCAACACTGCATTTGGTTCTAAGGCTTCGTGGTGGGATTATTGAGCCATCTTTGATGGCATTGGCCAGGAAATATAACC
AGGACAAGATGATCTGCCGCAAATGTTATGCACGCCTGCATCCCCGTGCTGTCAACTGCCGTAAGAAGAAATGTGGTCACAGCAATCAGCTGAGGCCAAAGAAGAAAATC
AAGTAGACGGCTGATCTTAAGGATGAAATGTTGTGGTTCCTTATATATCACTTCAATGCGCTCTGTAGAGTCTTAGATTATGTGCCCGTTTGTTAAGGATTCAATTTTGT
AGTTCGGACTTCAGAACTTTTGTTGCATTACATTGATTATGAGATGGTGTTGTTTTCTTTTTGAATCTATTTTATTGATGAAACGTGTTAATTTGTTTTT

Protein sequence

Show/hide protein sequence

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNC
RKKKCGHSNQLRPKKKIK

CSPI05G02890 (gene) of Cucumber (PI 183967) v1 genome