CuGenDBv2

Gene ID	CSPI05G03230
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Succinate dehydrogenase assembly factor 4, mitochondrial
Genome location	Chr5:3552842..3553574
RNA-Seq Expression	CSPI05G03230
Synteny	CSPI05G03230
Gene Ontology terms	GO:0006520 - cellular amino acid metabolic process (biological process) GO:0034553 - mitochondrial respiratory chain complex II assembly (biological process) GO:0005739 - mitochondrion (cellular component) GO:0016638 - oxidoreductase activity, acting on the CH-NH2 group of donors (molecular function) GO:0043167 - ion binding (molecular function)
InterPro domains	IPR012875 - Succinate dehydrogenase assembly factor 4

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0042555.1 succinate dehydrogenase assembly factor 4 [Cucumis melo var. makuwa]

6.2e-41

85.59

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Query:  MSSNLNRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYG
        MSS+L+RLFSSPPTLSALP V RLT NSLSRFVSSSSNQQ SR EQGVSSEEQREA KGSSPN+HEAAGDDRG QD+GVDTEKM  EIGGPKG EPTRYG
Subjt:  MSSNLNRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYG

Query:  DWERKGRCSDF
        DWER GRC DF
Subjt:  DWERKGRCSDF

KGN49871.1 hypothetical protein Csa_000062 [Cucumis sativus]

9.5e-50

97.3

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Query:  MSSNLNRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYG
        MSSNL+RLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQ SRLE+GVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYG
Subjt:  MSSNLNRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYG

Query:  DWERKGRCSDF
        DWERKGRCSDF
Subjt:  DWERKGRCSDF

XP_022957978.1 succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita moschata]

3.6e-33

73.87

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Query:  MSSNLNRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYG
        MSSNL RLF SPP+L+AL AV+R T  S+SR VSSS+NQQ SRLEQGV  EEQREAGKGS P++HEAAGDDR  +DEG D  K T E+GGPKGPEPTRYG
Subjt:  MSSNLNRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYG

Query:  DWERKGRCSDF
        DWER GRC DF
Subjt:  DWERKGRCSDF

XP_022995844.1 succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita maxima]

9.5e-34

73.87

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Query:  MSSNLNRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYG
        MSSNL RLF SPP+L+AL AV+R+T  S+SR VSSS+NQQ SRLEQGV  EEQREAGKGS P++HEAAGDDR  +DEG D  K T E+GGPKGPEPTRYG
Subjt:  MSSNLNRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYG

Query:  DWERKGRCSDF
        DWER GRC DF
Subjt:  DWERKGRCSDF

XP_023532848.1 succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita pepo subsp. pepo]

8.1e-33

72.97

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Query:  MSSNLNRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYG
        MSSNL RLF SPP+L++L AV+R T  S+SR VSSS+NQQ SRLEQGV  EEQREAGKGS P++HEAAGDDR  +DEG D  K T E+GGPKGPEPTRYG
Subjt:  MSSNLNRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYG

Query:  DWERKGRCSDF
        DWER GRC DF
Subjt:  DWERKGRCSDF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQ66 Succinate dehydrogenase assembly factor 4, mitochondrial

4.6e-50

97.3

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Query:  MSSNLNRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYG
        MSSNL+RLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQ SRLE+GVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYG
Subjt:  MSSNLNRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYG

Query:  DWERKGRCSDF
        DWERKGRCSDF
Subjt:  DWERKGRCSDF

A0A540K2K1 Succinate dehydrogenase assembly factor 4, mitochondrial

6.5e-12

46.9

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Query:  MSSNLNRLFSSP--PTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTR
        M+ NL RLFSS   PT+SA   ++R   NS+SR + SS++Q +++ E+   S+EQ E       N+ E   DD G  ++     K T EIGGP+GPEPTR
Subjt:  MSSNLNRLFSSP--PTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTR

Query:  YGDWERKGRCSDF
        +GDWER GRC DF
Subjt:  YGDWERKGRCSDF

A0A5A7TMD3 Succinate dehydrogenase assembly factor 4, mitochondrial

3.0e-41

85.59

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Query:  MSSNLNRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYG
        MSS+L+RLFSSPPTLSALP V RLT NSLSRFVSSSSNQQ SR EQGVSSEEQREA KGSSPN+HEAAGDDRG QD+GVDTEKM  EIGGPKG EPTRYG
Subjt:  MSSNLNRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYG

Query:  DWERKGRCSDF
        DWER GRC DF
Subjt:  DWERKGRCSDF

A0A6J1H1T7 Succinate dehydrogenase assembly factor 4, mitochondrial

1.8e-33

73.87

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Query:  MSSNLNRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYG
        MSSNL RLF SPP+L+AL AV+R T  S+SR VSSS+NQQ SRLEQGV  EEQREAGKGS P++HEAAGDDR  +DEG D  K T E+GGPKGPEPTRYG
Subjt:  MSSNLNRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYG

Query:  DWERKGRCSDF
        DWER GRC DF
Subjt:  DWERKGRCSDF

A0A6J1K722 Succinate dehydrogenase assembly factor 4, mitochondrial

4.6e-34

73.87

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Query:  MSSNLNRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYG
        MSSNL RLF SPP+L+AL AV+R+T  S+SR VSSS+NQQ SRLEQGV  EEQREAGKGS P++HEAAGDDR  +DEG D  K T E+GGPKGPEPTRYG
Subjt:  MSSNLNRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYG

Query:  DWERKGRCSDF
        DWER GRC DF
Subjt:  DWERKGRCSDF

SwissProt top hits

e value

%identity

Alignment

Q54Y25 Succinate dehydrogenase assembly factor 4, mitochondrial

2.8e-04

31.82

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Query:  SNLNRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVD-TEKMTREIGGPKGPEPTRYGD
        +NL   F+    L+A    +++  +  S  +++++N   +     +S+ ++ E  K +     +   ++   +DE       +T+EIGGPKGPEPTRY D
Subjt:  SNLNRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVD-TEKMTREIGGPKGPEPTRYGD

Query:  WERKGRCSDF
        WER GR SDF
Subjt:  WERKGRCSDF

Q5VUM1 Succinate dehydrogenase assembly factor 4, mitochondrial

1.1e-08

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Query:  DTEKMTREIGGPKGPEPTRYGDWERKGRCSDF
        D   +T+E GGP+GPEPTRYGDWERKGRC DF
Subjt:  DTEKMTREIGGPKGPEPTRYGDWERKGRCSDF

Q8BTE0 Succinate dehydrogenase assembly factor 4, mitochondrial

1.9e-05

39.81

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Query:  LSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSS-PNRHEAAGDDRGGQDEGV-----DTEKMTREIGGPKGPEPTRYGDWERKGRC
        +S   +VSR+TF   +   S  ++  R    Q    E  ++A K S  P     + +D   + E +     D   +T+E GGPKGPEPTRYGDWERKGRC
Subjt:  LSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSS-PNRHEAAGDDRGGQDEGV-----DTEKMTREIGGPKGPEPTRYGDWERKGRC

Query:  SDF
         DF
Subjt:  SDF

Q92J60 UPF0369 protein RC0209

2.8e-04

69.23

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Query:  REIGGPKGPEPTRYGDWERKGRCSDF
        +EIGG KG EPTRYGDW+ KG+ +DF
Subjt:  REIGGPKGPEPTRYGDWERKGRCSDF

Q9VLU6 Succinate dehydrogenase assembly factor 4, mitochondrial

7.1e-08

80.65

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Query:  TEKMTREIGGPKGPEPTRYGDWERKGRCSDF
        T   T EIGGP GPEPTRYGDWERKGR SDF
Subjt:  TEKMTREIGGPKGPEPTRYGDWERKGRCSDF

Arabidopsis top hits

e value

%identity

Alignment

AT5G67490.1 unknown protein

4.3e-08

40.37

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Query:  AVSRLTFNSLSRFVSS---------SSNQQRSR-------LEQGVS-SEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDW
        +VS      +SRF+SS         S NQ  +R       L+Q +   +E+ E G+G             GG  E V+ +  T EIGGP+GPEPTRYGDW
Subjt:  AVSRLTFNSLSRFVSS---------SSNQQRSR-------LEQGVS-SEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDW

Query:  ERKGRCSDF
        E++GRCSDF
Subjt:  ERKGRCSDF

Sequences

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CDS sequence

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ATGTCGAGCAATCTCAACCGCCTGTTCTCGTCACCGCCGACTCTCTCAGCCCTGCCGGCGGTGAGTCGCCTAACTTTCAACTCGTTGAGCCGATTCGTTAGCTCCTCGTC
CAATCAACAGCGTTCTCGATTGGAGCAAGGTGTGTCTAGCGAGGAACAACGAGAGGCCGGGAAAGGAAGTTCGCCGAATCGACACGAGGCTGCCGGAGATGACCGAGGTG
GTCAAGATGAAGGAGTTGATACGGAAAAAATGACTCGCGAGATCGGTGGACCAAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAAGGGTCGGTGCTCCGAT
TTTTGA

mRNA sequence

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ACCAACCGCCGGGAGTTCGCGGATCCGATTGAGTAAACAAAGTATGTCGAGCAATCTCAACCGCCTGTTCTCGTCACCGCCGACTCTCTCAGCCCTGCCGGCGGTGAGTC
GCCTAACTTTCAACTCGTTGAGCCGATTCGTTAGCTCCTCGTCCAATCAACAGCGTTCTCGATTGGAGCAAGGTGTGTCTAGCGAGGAACAACGAGAGGCCGGGAAAGGA
AGTTCGCCGAATCGACACGAGGCTGCCGGAGATGACCGAGGTGGTCAAGATGAAGGAGTTGATACGGAAAAAATGACTCGCGAGATCGGTGGACCAAAAGGCCCCGAGCC
CACCCGCTACGGCGATTGGGAACGAAAGGGTCGGTGCTCCGATTTTTGACATTTCGAGGTTAGATTGTGAACGAGATCTTAGGATGATATGATTTCTGTAACTCAATTTC
GTGAGCTTTGTTTTCCTTAATCTGAGTTTTCGTTTTTCTGCAAATTCATTTCCAGAACTGTATGCGTTTCTTTGAGATCGAAGGGAAATTAGAATAATATTATTCATCGT
TTCAATAGTACTTGATTCTGGTAATCTTTTTGCATTACGCTTTTGTTTAGTCAGGATGTATTAAGTTCTGTATGAACTTTGAATTTGTATAGCTTGTTGAACAAAATTTC
CGAGAAATTAGAGGAAGGAGATTAGTTTATTAGGATGGTTCAAATCTGCTTGAACTTTTCTTATCAAATTGTC

Protein sequence

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MSSNLNRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQRSRLEQGVSSEEQREAGKGSSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSD
F

CSPI05G03230 (gene) of Cucumber (PI 183967) v1 genome