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CSPI05G03530 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G03530
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionSerine/arginine repetitive matrix protein 1-like
Genome locationChr5:3705326..3705556
RNA-Seq ExpressionCSPI05G03530
SyntenyCSPI05G03530
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037301.1 serine/arginine repetitive matrix protein 1-like [Cucumis melo var. makuwa]3.5e-1981.03Show/hide
Query:  KAVGVDVDLKNFLVLLAEFSREFPRNGVWRDGLRRMKEKNLKDMNEKWVLLHIEGVEL
        + VGVD+DLKNF VL+AEFS++FP NGVWR+GLRRM+EKNLKDMNEKWVLLHIEG EL
Subjt:  KAVGVDVDLKNFLVLLAEFSREFPRNGVWRDGLRRMKEKNLKDMNEKWVLLHIEGVEL

KAE8637412.1 hypothetical protein CSA_023389, partial [Cucumis sativus]1.6e-2785.71Show/hide
Query:  MTTGQCETSKPNTRIVDKAVG--VDVDLKNFLVLLAEFSREFPRNGVWRDGLRRMKEKNLKDMNEKWVLLHIEGVEL
        MTTGQCETS+PNTRIVDK VG  VDVDLKNF VLLAE SR+F  NGVWRDGLRRM+EKNLKDMNEKWVLLHIEG EL
Subjt:  MTTGQCETSKPNTRIVDKAVG--VDVDLKNFLVLLAEFSREFPRNGVWRDGLRRMKEKNLKDMNEKWVLLHIEGVEL

KAG6570827.1 hypothetical protein SDJN03_29742, partial [Cucurbita argyrosperma subsp. sororia]8.3e-1373.08Show/hide
Query:  VDLKNFLVLLAEFSREFPRNGVWRDGLRRMKEKNLKDMNEKWVLLHIEGVEL
        VDL +F VLL+EFSR FP NGVW++GLR M+EK+L+DMNEKWVLLHIE  EL
Subjt:  VDLKNFLVLLAEFSREFPRNGVWRDGLRRMKEKNLKDMNEKWVLLHIEGVEL

KAG6606028.1 hypothetical protein SDJN03_03345, partial [Cucurbita argyrosperma subsp. sororia]1.9e-1273.08Show/hide
Query:  VDLKNFLVLLAEFSREFPRNGVWRDGLRRMKEKNLKDMNEKWVLLHIEGVEL
        VDLKNF VL++EFSR+FP NGVWR+GL+ M+E +LK MNEKWVLLHIE  EL
Subjt:  VDLKNFLVLLAEFSREFPRNGVWRDGLRRMKEKNLKDMNEKWVLLHIEGVEL

KGN46890.1 hypothetical protein Csa_020607 [Cucumis sativus]4.1e-2086.21Show/hide
Query:  KAVGVDVDLKNFLVLLAEFSREFPRNGVWRDGLRRMKEKNLKDMNEKWVLLHIEGVEL
        + VGVDVDLKNF VL+AEFSR+FP NGVWRDGLRRM EKNLKDMNEKWVLLHIEG EL
Subjt:  KAVGVDVDLKNFLVLLAEFSREFPRNGVWRDGLRRMKEKNLKDMNEKWVLLHIEGVEL

TrEMBL top hitse value%identityAlignment
A0A0A0KAX7 Uncharacterized protein2.0e-2086.21Show/hide
Query:  KAVGVDVDLKNFLVLLAEFSREFPRNGVWRDGLRRMKEKNLKDMNEKWVLLHIEGVEL
        + VGVDVDLKNF VL+AEFSR+FP NGVWRDGLRRM EKNLKDMNEKWVLLHIEG EL
Subjt:  KAVGVDVDLKNFLVLLAEFSREFPRNGVWRDGLRRMKEKNLKDMNEKWVLLHIEGVEL

A0A0A0LBY9 Uncharacterized protein4.7e-3087.34Show/hide
Query:  MTTGQCETSKPNTRIVDKAVG----VDVDLKNFLVLLAEFSREFPRNGVWRDGLRRMKEKNLKDMNEKWVLLHIEGVEL
        MTTGQCETSKPNTRIVDK VG    VDVDLKNF VLLAEFSR+FP NGVWRDGLRRM+EKNLKDMNEKWVLLHIEG EL
Subjt:  MTTGQCETSKPNTRIVDKAVG----VDVDLKNFLVLLAEFSREFPRNGVWRDGLRRMKEKNLKDMNEKWVLLHIEGVEL

A0A5A7T6T1 Serine/arginine repetitive matrix protein 1-like1.7e-1981.03Show/hide
Query:  KAVGVDVDLKNFLVLLAEFSREFPRNGVWRDGLRRMKEKNLKDMNEKWVLLHIEGVEL
        + VGVD+DLKNF VL+AEFS++FP NGVWR+GLRRM+EKNLKDMNEKWVLLHIEG EL
Subjt:  KAVGVDVDLKNFLVLLAEFSREFPRNGVWRDGLRRMKEKNLKDMNEKWVLLHIEGVEL

A0A6P5ZW34 probable transcription factor At1g617307.6e-0443.14Show/hide
Query:  DLKNFLVLLAEFSREFPRNGVWRDGLRRMKEKNLKDMNEKWVLLHIEGVEL
        DL  F  L+AEFSR  P N VW++ ++ ++E+ LK M+++WVL+ +E  +L
Subjt:  DLKNFLVLLAEFSREFPRNGVWRDGLRRMKEKNLKDMNEKWVLLHIEGVEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACTGGTCAGTGTGAAACCAGTAAACCTAATACTCGAATAGTTGACAAAGCGGTTGGGGTTGATGTTGATCTGAAGAACTTTCTTGTTCTTCTAGCTGAATTTTC
TCGGGAGTTTCCAAGGAATGGGGTGTGGAGAGATGGGCTGAGGAGAATGAAAGAGAAGAATTTGAAGGATATGAATGAGAAATGGGTTTTGTTGCATATTGAAGGGGTTG
AGCTTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAACTGGTCAGTGTGAAACCAGTAAACCTAATACTCGAATAGTTGACAAAGCGGTTGGGGTTGATGTTGATCTGAAGAACTTTCTTGTTCTTCTAGCTGAATTTTC
TCGGGAGTTTCCAAGGAATGGGGTGTGGAGAGATGGGCTGAGGAGAATGAAAGAGAAGAATTTGAAGGATATGAATGAGAAATGGGTTTTGTTGCATATTGAAGGGGTTG
AGCTTAATTAA
Protein sequenceShow/hide protein sequence
MTTGQCETSKPNTRIVDKAVGVDVDLKNFLVLLAEFSREFPRNGVWRDGLRRMKEKNLKDMNEKWVLLHIEGVELN