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CSPI05G04790 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G04790
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionarabinogalactan peptide 22-like
Genome locationChr5:4588372..4589528
RNA-Seq ExpressionCSPI05G04790
SyntenyCSPI05G04790
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579545.1 Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia]1.0e-1572.37Show/hide
Query:  MAVVACKVPFG---GILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVS
        MAVVA K+PFG   G++FV+A++L     A AQSL+PAQPPA  DGTSIDQGIAYVLMLLALVLTYIIHSADL +S
Subjt:  MAVVACKVPFG---GILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVS

KAG7017004.1 Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma]6.0e-1673.97Show/hide
Query:  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVS
        MAVVA K+PF G+ F V  VL  +  A AQSL+PAQPPA  DGTSIDQGIAYVLMLLALVLTYIIHSADL +S
Subjt:  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVS

XP_004143956.1 arabinogalactan protein 41 [Cucumis sativus]8.1e-29100Show/hide
Query:  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVSL
        MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVSL
Subjt:  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVSL

XP_008437371.1 PREDICTED: arabinogalactan peptide 22-like [Cucumis melo]1.6e-2490.54Show/hide
Query:  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVSL
        MAVVACK+PF GILFVVALVLTRLS A AQSLSPAQPPAT DGTSIDQGIAY LMLLALVLTYIIHSAD YVSL
Subjt:  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVSL

XP_022996281.1 arabinogalactan peptide 22-like [Cucurbita maxima]5.8e-1166.23Show/hide
Query:  MAVVA-CKVPFGGILFVVALVLTRL--SSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVSL
        M VVA  KVP+ G+L  VA VL  L  +SA   SLSPAQPP   DGTS+DQGIAYVLMLLAL+LTYIIH A+L +SL
Subjt:  MAVVA-CKVPFGGILFVVALVLTRL--SSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVSL

TrEMBL top hitse value%identityAlignment
A0A0A0KK44 Uncharacterized protein3.9e-29100Show/hide
Query:  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVSL
        MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVSL
Subjt:  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVSL

A0A1S3ATI9 arabinogalactan peptide 22-like7.6e-2590.54Show/hide
Query:  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVSL
        MAVVACK+PF GILFVVALVLTRLS A AQSLSPAQPPAT DGTSIDQGIAY LMLLALVLTYIIHSAD YVSL
Subjt:  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVSL

A0A5D3C2F1 Arabinogalactan peptide 22-like7.6e-2590.54Show/hide
Query:  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVSL
        MAVVACK+PF GILFVVALVLTRLS A AQSLSPAQPPAT DGTSIDQGIAY LMLLALVLTYIIHSAD YVSL
Subjt:  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVSL

A0A6J1CXM0 arabinogalactan peptide 22-like2.4e-1067.21Show/hide
Query:  ILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVS
        + FV+   L   + A  +S+SPAQP AT DGTSIDQGIAY LMLLALVLTYIIHSADL +S
Subjt:  ILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVS

A0A6J1K4A3 arabinogalactan peptide 22-like2.8e-1166.23Show/hide
Query:  MAVVA-CKVPFGGILFVVALVLTRL--SSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVSL
        M VVA  KVP+ G+L  VA VL  L  +SA   SLSPAQPP   DGTS+DQGIAYVLMLLAL+LTYIIH A+L +SL
Subjt:  MAVVA-CKVPFGGILFVVALVLTRL--SSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVSL

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 161.3e-0865.45Show/hide
Query:  FVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSAD
        FV A++   LS A AQSL+PA P  T DGTSIDQGIAY+LM++ALVLTY+IH  D
Subjt:  FVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSAD

Q8L9T8 Arabinogalactan protein 414.8e-0858.62Show/hide
Query:  FGGILFVVALVLT-RLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIH
        F G+  +V+++    L  A+AQS +PA P  T DGT+IDQGIAYVLML+ALVLTY+IH
Subjt:  FGGILFVVALVLT-RLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIH

Q9FK16 Arabinogalactan protein 227.6e-0650Show/hide
Query:  VVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIH
        + + K P   +   V + +  L  A + S SPA P  T DGTSIDQGIAYVLM++AL LTY IH
Subjt:  VVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIH

Q9M373 Arabinogalactan protein 201.8e-0758.62Show/hide
Query:  ILFVVALVLTRLSS-AYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSAD
        ++ + A V   +S  A AQSL+PA P  T DGTSIDQGIAY+LM++ALVLTY+IH  D
Subjt:  ILFVVALVLTRLSS-AYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSAD

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 168.9e-1065.45Show/hide
Query:  FVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSAD
        FV A++   LS A AQSL+PA P  T DGTSIDQGIAY+LM++ALVLTY+IH  D
Subjt:  FVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSAD

AT3G61640.1 arabinogalactan protein 201.3e-0858.62Show/hide
Query:  ILFVVALVLTRLSS-AYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSAD
        ++ + A V   +S  A AQSL+PA P  T DGTSIDQGIAY+LM++ALVLTY+IH  D
Subjt:  ILFVVALVLTRLSS-AYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSAD

AT5G24105.1 arabinogalactan protein 413.4e-0958.62Show/hide
Query:  FGGILFVVALVLT-RLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIH
        F G+  +V+++    L  A+AQS +PA P  T DGT+IDQGIAYVLML+ALVLTY+IH
Subjt:  FGGILFVVALVLT-RLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIH

AT5G53250.1 arabinogalactan protein 225.4e-0750Show/hide
Query:  VVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIH
        + + K P   +   V + +  L  A + S SPA P  T DGTSIDQGIAYVLM++AL LTY IH
Subjt:  VVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTCGTTGCTTGTAAGGTCCCTTTTGGTGGCATTTTGTTTGTTGTTGCTTTAGTTTTGACCAGGCTTTCCTCTGCTTATGCTCAATCGTTGTCTCCGGCTCAACC
ACCTGCTACTGGCGATGGAACAAGCATAGATCAGGGGATTGCCTATGTATTGATGTTGTTGGCGTTGGTGCTCACCTACATTATCCATTCAGCGGATCTTTACGTCAGTT
TATAA
mRNA sequenceShow/hide mRNA sequence
GCTATATTGATCCATGATAGACTATTTGAAGAAAATCCAATAAAAGGGTATGAAAAGGGCGATTTAAACGGACATGGCAGTTGGTAGTTACAACATTCCAAAGCAAATGA
GGCTATAAAATCCATAGCCCCATTGATTGAGAAGCAGACCGCCATTGCCACGCCGTCGTTCTTCTACACAGGGACTGTCAAATTGGAGGGTTTGGCTAGCCCTCTCCCCC
CATCCCCTTTTGACAGTTTCAAATCATTTATCAATTCACGGCCTAAATACACTTTAATTTTCTAATAATATCTCTCTCTGCTACGCCTCTCCGGACCTTTTCTTCTTAAC
CTTTTCAATTCTTGAGAGACGTTGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGTGAGAGAGATCTCATTCCTTCTTCCTTTACTAATTTTCCATTACAAGCT
TCTCCTTTTTTTTCAACATGGCGGTCGTTGCTTGTAAGGTCCCTTTTGGTGGCATTTTGTTTGTTGTTGCTTTAGTTTTGACCAGGCTTTCCTCTGCTTATGCTCAATCG
TTGTCTCCGGCTCAACCACCTGCTACTGGCGATGGAACAAGCATAGATCAGGGGATTGCCTATGTATTGATGTTGTTGGCGTTGGTGCTCACCTACATTATCCATTCAGC
GGATCTTTACGTCAGTTTATAAATTCCTTCACAAAACTAATTCAGATTCAGATTCAGATTTCAAATGGGGTTGAAGAATTTATGATAGGAAAATATGATCTCATGGACTA
AACTTTACATGTAAATTAATGAAAATGATGATTTCTTTTACCTCAATGGTGGATTTTTCTTGTCCATCTTCCCTTGTCAGTTTTGTTTCTTTTTAAATTAACTATTGTTA
ATAAAGCAGACATTTTTAGCGTTCATGTCATATTTATTAGAACAATTGTTGAATAGATAAAAAAAGGCCGTCGTGTCGGTGCCATGTTGGTCCAAGAGACCAACTTAAAT
ATTGTGCTTAGCATAACAGATTAGAATGATTGAACGAAACAAACATAATTGATATCCATAAGCTTC
Protein sequenceShow/hide protein sequence
MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALVLTYIIHSADLYVSL