; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G05490 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G05490
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionYqgFc domain-containing protein
Genome locationChr5:5084810..5087860
RNA-Seq ExpressionCSPI05G05490
SyntenyCSPI05G05490
Gene Ontology termsGO:0000967 - rRNA 5'-end processing (biological process)
InterPro domainsIPR005227 - Putative pre-16S rRNA nuclease
IPR006641 - YqgF/RNase H-like domain
IPR012337 - Ribonuclease H-like superfamily
IPR037027 - YqgF/RNase H-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143911.1 uncharacterized protein LOC101219574 [Cucumis sativus]6.8e-9299.41Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMA DFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET
        DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET

XP_008437257.1 PREDICTED: putative pre-16S rRNA nuclease isoform X1 [Cucumis melo]1.0e-7987.57Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYV+P +LFRDL KRD L+H RLLGLDVGDKYVGLAVSDPDNKIA PLSVLLRKK TMDLMA DFQK+ISEFSLAGFIVGYPFDRLR N +A+QVKIFI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET
        DDLCKTGKLEGVKYTFWDE FTSKNVE +IKPLNLLPAVSKT++DKFAAVGILQGYLDYFNRRPEL ET
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET

XP_022957830.1 uncharacterized protein LOC111459253 [Cucurbita moschata]2.2e-7484.52Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYVRPL LFRDL K +ALE GR LGLDVGDKYVGLAVSDPDNKIA PLSVL RKKT M LMA DFQ++ISE SL+GFIVGYPFD  R N DA+QVKIFI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE
        DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPL L P +SKTIIDKFAAVGILQGYLD+FNRRPEL E
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE

XP_022995255.1 uncharacterized protein LOC111490857 [Cucurbita maxima]2.9e-7484.52Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYVRPL LFRDL K +ALE GR LGLDVGDKYVGLAVSDPDNKIA PLSVL RKKT M LMA DFQ++ISE SL+GFIVGYPFD  R N DA+QVKIFI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE
        DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPL L P +SKTIIDKFAAVGILQGYLD+FNRRPEL E
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE

XP_038875331.1 putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida]1.5e-7583.93Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYV+PL LFRDL KR+ LEHGRLLGLDVGDKYVGLAVSDPDNKIA PLSVL+RKKT M LMA DF+++IS+FSLAGFIVGYP  RLR NPDA+QVKIFI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE
        D+LCKTGKLE VKYTFWDECFTSKNVELLIKPL L P +SKT++DKFAAVGILQGYLDYFNRRPEL E
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE

TrEMBL top hitse value%identityAlignment
A0A0A0KMK7 YqgFc domain-containing protein3.3e-9299.41Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMA DFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET
        DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET

A0A1S3ATQ4 putative pre-16S rRNA nuclease isoform X14.9e-8087.57Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYV+P +LFRDL KRD L+H RLLGLDVGDKYVGLAVSDPDNKIA PLSVLLRKK TMDLMA DFQK+ISEFSLAGFIVGYPFDRLR N +A+QVKIFI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET
        DDLCKTGKLEGVKYTFWDE FTSKNVE +IKPLNLLPAVSKT++DKFAAVGILQGYLDYFNRRPEL ET
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET

A0A6J1E3H7 uncharacterized protein LOC1110261451.7e-7282.53Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYV+PL +FRDL  R+ LE GR LGLDVGDKYVGLAVSDPDN IA PLSVLLRKKT M LMA D Q++ISE SLAGFIVGYPFDR R N DA+QVKIFI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPEL
        DDLCKTG LEGVKYTFWDECFTSKNVELLIKPL L P +SKTI+DKFAAVGILQGYLDY NRRPEL
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPEL

A0A6J1H0B7 uncharacterized protein LOC1114592531.1e-7484.52Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYVRPL LFRDL K +ALE GR LGLDVGDKYVGLAVSDPDNKIA PLSVL RKKT M LMA DFQ++ISE SL+GFIVGYPFD  R N DA+QVKIFI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE
        DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPL L P +SKTIIDKFAAVGILQGYLD+FNRRPEL E
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE

A0A6J1K3L4 uncharacterized protein LOC1114908571.4e-7484.52Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYVRPL LFRDL K +ALE GR LGLDVGDKYVGLAVSDPDNKIA PLSVL RKKT M LMA DFQ++ISE SL+GFIVGYPFD  R N DA+QVKIFI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE
        DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPL L P +SKTIIDKFAAVGILQGYLD+FNRRPEL E
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE

SwissProt top hitse value%identityAlignment
A4XKC6 Putative pre-16S rRNA nuclease9.1e-1535.17Show/hide
Query:  RLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHD----FQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKI-FIDDLC-KTGKLEGVKYTF
        R+L LD+G + +G+A+SDP    A P  VL       DL   D      K+ +E  +   ++GYP  +   +PD    K+  ID++C +  +   V    
Subjt:  RLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHD----FQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKI-FIDDLC-KTGKLEGVKYTF

Query:  WDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFN
        WDE F++K VE +++  N+     K ++DK AAV ILQGYLD+ N
Subjt:  WDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFN

B9MRK7 Putative pre-16S rRNA nuclease7.0e-1538.03Show/hide
Query:  RLLGLDVGDKYVGLAVSDPDNKIACP-LSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKI-FIDDLC-KTGKLEGVKYTFWDE
        R+L LD+G+  VG+A+SDP    A P +++ LR K   +    +  K+   +++   ++GYP  +L  +PD    K+  ID++  K G    V+   WDE
Subjt:  RLLGLDVGDKYVGLAVSDPDNKIACP-LSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKI-FIDDLC-KTGKLEGVKYTFWDE

Query:  CFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFN
         F++K VE +I    L     K IIDK AAV ILQGYLD++N
Subjt:  CFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFN

Q1QL26 Putative pre-16S rRNA nuclease7.7e-1435Show/hide
Query:  EHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDR-LRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWD
        E G L+GLD+G K +G+AVSDPD ++A  +  L RK  T D  A     +  E + AGF++G P +      P A   + F  +L    +L  +    WD
Subjt:  EHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDR-LRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWD

Query:  ECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLD
        E  ++  VE  +  +++  A    +ID+ AA+ ILQG LD
Subjt:  ECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLD

Q3AEN4 Putative pre-16S rRNA nuclease1.7e-1336.23Show/hide
Query:  RLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRN-NPDAMQVKIFIDDLCKTGKLEGVKYTFWDECF
        ++LGLDVGDK +G+A+SD     A  L+V+ R     DL   + +K+I    +   ++GYP +      P A  VK F  +L    K  G+K  FWDE  
Subjt:  RLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRN-NPDAMQVKIFIDDLCKTGKLEGVKYTFWDECF

Query:  TSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDY
        ++   E L+   ++     K +IDK AA  IL GYL+Y
Subjt:  TSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDY

Q52673 Putative pre-16S rRNA nuclease1.7e-1336.23Show/hide
Query:  GRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDR-LRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC
        G L GLD+G K +G+AVSD    IA PL  + R+K ++DL   D  K ++E  +AGF++G P +      P A   + F  +L    KL  +  TFWDE 
Subjt:  GRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDR-LRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC

Query:  FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLD
         ++   E  +   +L       ++D  AA  ILQG LD
Subjt:  FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLD

Arabidopsis top hitse value%identityAlignment
AT3G52905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.3e-5259.88Show/hide
Query:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI
        MKYV+PL L  +  K      GR LGLDVGDKYVGLA+SDP N +A PLSVLLRKK+ +DLMA DFQ ++  FS++G +VGYPF +L N  D + V +FI
Subjt:  MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFI

Query:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNR
        ++L KT KL+ VKYT+WDE  +SK VEL++KPLNL P   KT++DK AAV ILQ YLDY NR
Subjt:  DDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTATGTGAGGCCGTTGATGCTTTTTCGTGATTTGACGAAGAGAGATGCACTTGAACATGGCCGTTTGCTTGGTTTAGATGTTGGTGACAAGTATGTTGGTTTAGC
CGTGTCTGACCCAGATAATAAAATCGCTTGCCCTCTCAGTGTTTTGTTACGGAAGAAGACCACAATGGATTTGATGGCTCATGATTTTCAGAAAATGATCTCTGAATTTT
CCCTGGCGGGGTTCATTGTTGGGTACCCTTTCGATAGACTACGGAACAACCCGGACGCTATGCAAGTGAAGATCTTCATTGATGACCTTTGCAAAACTGGAAAACTTGAA
GGCGTAAAGTATACTTTTTGGGATGAGTGCTTTACATCAAAGAATGTGGAACTACTGATAAAGCCATTAAACCTGCTCCCCGCTGTGTCAAAGACAATAATTGACAAATT
TGCTGCTGTTGGAATACTTCAGGGTTACTTGGATTATTTTAACAGAAGACCGGAATTGGGCGAGACGTAG
mRNA sequenceShow/hide mRNA sequence
ATCGCATCGAGGGCTCGGAAGGATTCGGGCTTGATGGAGTCTTGACTCACATTCGATTGCGAATGAGTCTGAATGTGCATAACCGATTGTACGTTTTGATCCTCAAAGGC
GCGAAGCTGATAATGGTTTGTATGAATTAAATAGCAATACGAGATGAAGTATGTGAGGCCGTTGATGCTTTTTCGTGATTTGACGAAGAGAGATGCACTTGAACATGGCC
GTTTGCTTGGTTTAGATGTTGGTGACAAGTATGTTGGTTTAGCCGTGTCTGACCCAGATAATAAAATCGCTTGCCCTCTCAGTGTTTTGTTACGGAAGAAGACCACAATG
GATTTGATGGCTCATGATTTTCAGAAAATGATCTCTGAATTTTCCCTGGCGGGGTTCATTGTTGGGTACCCTTTCGATAGACTACGGAACAACCCGGACGCTATGCAAGT
GAAGATCTTCATTGATGACCTTTGCAAAACTGGAAAACTTGAAGGCGTAAAGTATACTTTTTGGGATGAGTGCTTTACATCAAAGAATGTGGAACTACTGATAAAGCCAT
TAAACCTGCTCCCCGCTGTGTCAAAGACAATAATTGACAAATTTGCTGCTGTTGGAATACTTCAGGGTTACTTGGATTATTTTAACAGAAGACCGGAATTGGGCGAGACG
TAGAGTAAGGTGGACTATATGGGATCAGACATTTGATTCTCCCTTCTTAGTAGGGGATGGAACAATTTATTTGAAGCTCTCAGTTCTTAAGTGGCGATGAATATGCATTG
ACAAATGACATCTTAAAAGGGTGAATCATCTGCTCTCAATCGACTAATCAGCTAATGGGGTTCGTTCTTCTTTATGTAGACTTTTTCTTGTGTGAATTCCATCAAGTGCT
TGTTTCCATTTTTGTTTATTACTAAATTATTACTAATGACAACAACTGTTCAATATAGTTTGTCTATATTACAAATCAACCTCTTTTATTTTAAAAATGGCTTCGATTGT
TTTTATGCTCGTGGGTGTGCTTATTCAATGATACGTTGGTGGCC
Protein sequenceShow/hide protein sequence
MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAHDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLE
GVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET