; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G06350 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G06350
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description40S ribosomal protein S13
Genome locationChr5:5727424..5729528
RNA-Seq ExpressionCSPI05G06350
SyntenyCSPI05G06350
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR009068 - S15/NS1, RNA-binding
IPR012606 - Ribosomal protein S13/S15, N-terminal
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042849.1 40S ribosomal protein S13 [Cucumis melo var. makuwa]1.4e-7599.31Show/hide
Query:  GISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDK
        GISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDK
Subjt:  GISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDK

Query:  DSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEACGIKHRPV
        DSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEACGIKH PV
Subjt:  DSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEACGIKHRPV

XP_004147576.1 40S ribosomal protein S13 [Cucumis sativus]7.6e-7497.95Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY S  A
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA

XP_022157239.1 40S ribosomal protein S13-like [Momordica charantia]6.5e-7396.58Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY S  A
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA

XP_022922396.1 40S ribosomal protein S13-like [Cucurbita moschata]6.5e-7396.58Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY S  A
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA

XP_038874585.1 40S ribosomal protein S13-like [Benincasa hispida]2.9e-7397.26Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY S  A
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA

TrEMBL top hitse value%identityAlignment
A0A0A0KMS8 Ribosomal_S13_N domain-containing protein3.7e-7497.95Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY S  A
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA

A0A1S3ATA6 40S ribosomal protein S13-like3.7e-7497.95Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY S  A
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA

A0A5A7TNG4 40S ribosomal protein S136.7e-7699.31Show/hide
Query:  GISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDK
        GISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDK
Subjt:  GISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDK

Query:  DSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEACGIKHRPV
        DSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEACGIKH PV
Subjt:  DSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEACGIKHRPV

A0A6J1E411 40S ribosomal protein S13-like3.1e-7396.58Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY S  A
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA

A0A6J1HYG9 40S ribosomal protein S13-like3.1e-7396.58Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY S  A
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S131.4e-7090.41Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGR+HS+GKGIS+SALPY+RT PSWLKISS DV++ ICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA
        HLER RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY S  A
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA

P59223 40S ribosomal protein S13-13.1e-7089.73Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY S  A
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA

P59224 40S ribosomal protein S13-28.2e-7190.41Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY S  A
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA

P62302 40S ribosomal protein S134.6e-7494.52Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKRTPPSWLKISS DVE+NICKFAKKGLTPSQIGVILRDSHGIAQV SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY S  A
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA

Q69UI1 40S ribosomal protein S13-25.2e-6584.25Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKRTPPSWLK +++DVE+ I K AKKG  PSQIGV+LRD HGI  VKSVTG+KILRILKAHGLAPEIPEDLY LIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA
        HLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKY S  A
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S152.2e-7189.73Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY S  A
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA

AT4G00100.1 ribosomal protein S13A5.8e-7290.41Show/hide
Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY S  A
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCGTATGCACAGTCGTGGTAAGGGTATTTCCGCCTCTGCATTGCCCTACAAGAGGACGCCGCCAAGTTGGCTAAAGATCTCTTCTACGGATGTTGAAGATAATAT
CTGCAAGTTTGCGAAGAAGGGCTTAACCCCTTCTCAAATTGGTGTTATTCTTCGTGATTCTCACGGGATTGCTCAGGTCAAAAGTGTTACCGGAAACAAAATCTTGCGTA
TTCTTAAGGCTCATGGACTTGCACCGGAGATTCCAGAGGATCTCTATCACTTAATCAAGAAGGCAGTTTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACAAAGAC
TCCAAGTTCAGATTGATTCTTGTGGAGAGCAGAATTCACAGGCTTGCTCGTTACTATAAGAAAACCAAGAAGCTTCCACCAGTTTGGAAATACGCTTCTTTTGAAGCTTG
TGGTATTAAGCATCGTCCAGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCGTATGCACAGTCGTGGTAAGGGTATTTCCGCCTCTGCATTGCCCTACAAGAGGACGCCGCCAAGTTGGCTAAAGATCTCTTCTACGGATGTTGAAGATAATAT
CTGCAAGTTTGCGAAGAAGGGCTTAACCCCTTCTCAAATTGGTGTTATTCTTCGTGATTCTCACGGGATTGCTCAGGTCAAAAGTGTTACCGGAAACAAAATCTTGCGTA
TTCTTAAGGCTCATGGACTTGCACCGGAGATTCCAGAGGATCTCTATCACTTAATCAAGAAGGCAGTTTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACAAAGAC
TCCAAGTTCAGATTGATTCTTGTGGAGAGCAGAATTCACAGGCTTGCTCGTTACTATAAGAAAACCAAGAAGCTTCCACCAGTTTGGAAATACGCTTCTTTTGAAGCTTG
TGGTATTAAGCATCGTCCAGTTTGAGTTATTTCTTAAATAATATTACCTTTATTCATGTATATCAAGAATCATATTGACCTTTGTGTAGATAGAGTTTTATGGTATAATA
TGCTGTGGTGCATAATCATTCCATAATTCAAACCCGAACAAGGAAGCATAGAAGGGAAGCATCGCAGATACGTTTTGTTTGTGATCCAATAGAAACTGATGTTGAATGGC
TTGATAAAAAAAATTGGGGCACGAAAATGTTGACATTTTGTAGGAAGTCATTAAATTGACTGTTAGTTCTGCATATTGGGTTAGTGAAATATTTTTCTCGGTGGTGTTAA
CCTTTTGGATTTCGGAGGCTGGTATCCTCCTGTGCATTTGGATGTACTGTGTTTAGTCCGTGGTGCTAATGTAACAACCTTATTTGTAGGTTTAGTATCCTTTTTCCCTG
AATGATTTTGCACGGT
Protein sequenceShow/hide protein sequence
MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKD
SKFRLILVESRIHRLARYYKKTKKLPPVWKYASFEACGIKHRPV