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CSPI05G06950 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G06950
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description3-isopropylmalate dehydratase small subunit 3-like
Genome locationChr5:6174156..6174386
RNA-Seq ExpressionCSPI05G06950
SyntenyCSPI05G06950
Gene Ontology termsGO:0043436 - oxoacid metabolic process (biological process)
GO:0016836 - hydro-lyase activity (molecular function)
InterPro domainsIPR000573 - Aconitase A/isopropylmalate dehydratase small subunit, swivel domain
IPR015928 - Aconitase/3-isopropylmalate dehydratase, swivel


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152394.1 3-isopropylmalate dehydratase small subunit 3 [Cucumis sativus]1.3e-1884.38Show/hide
Query:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI
        MKTKYSIII GDNFGCGSSREH PVALG S AVAVVAESYA IF   NS+AT EIYPLESETRI
Subjt:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI

XP_008437054.1 PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Cucumis melo]1.3e-1884.38Show/hide
Query:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI
        MKTKYSIII GDNFGCGSSREH PVALG S AVAVVAESYA IF   NS+AT EIYPLESETRI
Subjt:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI

XP_022922281.1 3-isopropylmalate dehydratase small subunit 3-like [Cucurbita moschata]6.6e-1882.81Show/hide
Query:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI
        MKTKYSIII GDNFGCGSSREH PVALG S AVAVVAESYA IF   NS+AT EIYPLESE RI
Subjt:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI

XP_022972989.1 3-isopropylmalate dehydratase small subunit 3-like [Cucurbita maxima]6.6e-1882.81Show/hide
Query:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI
        MKTKYSIII GDNFGCGSSREH PVALG S AVAVVAESYA IF   NS+AT EIYPLESE RI
Subjt:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI

XP_038876127.1 3-isopropylmalate dehydratase small subunit 1-like [Benincasa hispida]1.3e-1884.38Show/hide
Query:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI
        MKTKYSIII GDNFGCGSSREH PVALG S AVAVVAESYA IF   NS+AT EIYPLESETRI
Subjt:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI

TrEMBL top hitse value%identityAlignment
A0A0A0KPA8 Aconitase_C domain-containing protein5.6e-3196.05Show/hide
Query:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRISRILKLNNNNNN
        MKTKYSIIIVGDNFGCGSSREHVPV LGVS AVAVVAESYAHIFLTANS+ATREIYPLESETRISRILKLNNNNNN
Subjt:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRISRILKLNNNNNN

A0A0A0KPB2 Aconitase_C domain-containing protein6.4e-1984.38Show/hide
Query:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI
        MKTKYSIII GDNFGCGSSREH PVALG S AVAVVAESYA IF   NS+AT EIYPLESETRI
Subjt:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI

A0A1S3AT32 3-isopropylmalate dehydratase small subunit 3-like6.4e-1984.38Show/hide
Query:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI
        MKTKYSIII GDNFGCGSSREH PVALG S AVAVVAESYA IF   NS+AT EIYPLESETRI
Subjt:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI

A0A5A7T900 3-isopropylmalate dehydratase small subunit 3-like6.4e-1984.38Show/hide
Query:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI
        MKTKYSIII GDNFGCGSSREH PVALG S AVAVVAESYA IF   NS+AT EIYPLESETRI
Subjt:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI

A0A6J1ID74 3-isopropylmalate dehydratase small subunit 3-like3.2e-1882.81Show/hide
Query:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI
        MKTKYSIII GDNFGCGSSREH PVALG S AVAVVAESYA IF   NS+AT EIYPLESE RI
Subjt:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI

SwissProt top hitse value%identityAlignment
A8ETJ8 3-isopropylmalate dehydratase small subunit9.2e-0760.98Show/hide
Query:  KYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIF
        K  II+ G+NFGCGSSREH P+AL  +   AVVA S+A IF
Subjt:  KYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIF

Q7M887 3-isopropylmalate dehydratase small subunit4.2e-0759.52Show/hide
Query:  TKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIF
        TK   I+ G+NFGCGSSREH PVAL  +   AV+A+S+A IF
Subjt:  TKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIF

Q9LYT7 3-isopropylmalate dehydratase small subunit 32.0e-1771.88Show/hide
Query:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI
        MK+KYS+II GDNFGCGSSREH PV LG + A AVVAESYA IF   N +AT EI+PLESE RI
Subjt:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI

Q9ZW84 3-isopropylmalate dehydratase small subunit 22.9e-1666.67Show/hide
Query:  KTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI
        ++KYSIII G+NFGCGSSREH PV LG + A A+VAESYA IF   NS+AT E++PLESE R+
Subjt:  KTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI

Q9ZW85 3-isopropylmalate dehydratase small subunit 11.2e-1770.31Show/hide
Query:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI
        MKTKYSIII G+NFGCGSSREH PV LG + A AVVA+SYA IF   NS+AT E+YPL+SE R+
Subjt:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI

Arabidopsis top hitse value%identityAlignment
AT2G43090.1 Aconitase/3-isopropylmalate dehydratase protein8.3e-1970.31Show/hide
Query:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI
        MKTKYSIII G+NFGCGSSREH PV LG + A AVVA+SYA IF   NS+AT E+YPL+SE R+
Subjt:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI

AT2G43090.2 Aconitase/3-isopropylmalate dehydratase protein2.0e-0459.46Show/hide
Query:  GVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI
        G + A AVVA+SYA IF   NS+AT E+YPL+SE R+
Subjt:  GVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI

AT2G43100.1 isopropylmalate isomerase 22.0e-1766.67Show/hide
Query:  KTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI
        ++KYSIII G+NFGCGSSREH PV LG + A A+VAESYA IF   NS+AT E++PLESE R+
Subjt:  KTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI

AT3G58990.1 isopropylmalate isomerase 11.4e-1871.88Show/hide
Query:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI
        MK+KYS+II GDNFGCGSSREH PV LG + A AVVAESYA IF   N +AT EI+PLESE RI
Subjt:  MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAACCAAATATTCCATCATAATTGTCGGTGACAACTTCGGTTGTGGTTCTTCACGGGAGCACGTGCCGGTTGCATTGGGAGTGTCCGACGCCGTGGCGGTAGTGGC
TGAATCTTATGCGCATATTTTCCTCACAGCAAACTCCATGGCAACCAGAGAGATTTATCCATTGGAATCAGAGACTAGGATTTCACGTATTTTAAAATTAAACAATAATA
ATAATAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAACCAAATATTCCATCATAATTGTCGGTGACAACTTCGGTTGTGGTTCTTCACGGGAGCACGTGCCGGTTGCATTGGGAGTGTCCGACGCCGTGGCGGTAGTGGC
TGAATCTTATGCGCATATTTTCCTCACAGCAAACTCCATGGCAACCAGAGAGATTTATCCATTGGAATCAGAGACTAGGATTTCACGTATTTTAAAATTAAACAATAATA
ATAATAACTAG
Protein sequenceShow/hide protein sequence
MKTKYSIIIVGDNFGCGSSREHVPVALGVSDAVAVVAESYAHIFLTANSMATREIYPLESETRISRILKLNNNNNN