; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI05G08050 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G08050
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description40S ribosomal protein S20
Genome locationChr5:6830978..6832756
RNA-Seq ExpressionCSPI05G08050
SyntenyCSPI05G08050
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001848 - Ribosomal protein S10
IPR005729 - Ribosomal protein S10, eukaryotic/archaeal
IPR018268 - Ribosomal protein S10, conserved site
IPR027486 - Ribosomal protein S10 domain
IPR036838 - Ribosomal protein S10 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600158.1 Glutathione S-transferase U17, partial [Cucurbita argyrosperma subsp. sororia]9.3e-5998.35Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

XP_004143650.1 40S ribosomal protein S20-2 [Cucumis sativus]8.4e-60100Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

XP_008439109.1 PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo]9.3e-5998.35Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

XP_008467267.1 PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo]3.2e-5999.17Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

XP_022929156.1 40S ribosomal protein S20-2 [Cucurbita moschata]2.7e-5898.35Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTK GLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

TrEMBL top hitse value%identityAlignment
A0A0A0KL82 Ribosomal_S10 domain-containing protein4.1e-60100Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

A0A1S4E624 40S ribosomal protein S20-21.5e-5999.17Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

A0A5A7VKH9 40S ribosomal protein S20-2-like4.5e-5998.35Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

A0A5D3DB09 40S ribosomal protein S20-21.5e-5999.17Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

A0A6J1IAH1 40S ribosomal protein S20-2-like4.5e-5998.35Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

SwissProt top hitse value%identityAlignment
P23403 40S ribosomal protein S204.8e-4274.77Show/hide
Query:  DAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE
        D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVE
Subjt:  DAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE

Query:  VEVTIAD
        VEVTIAD
Subjt:  VEVTIAD

P35686 40S ribosomal protein S201.8e-4982.79Show/hide
Query:  MAYA-AMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSAD
        +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSAD
Subjt:  MAYA-AMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSAD

Query:  VVKQITSITIEPGVEVEVTIAD
        VVKQITSITIEPGVEVEVTI+D
Subjt:  VVKQITSITIEPGVEVEVTIAD

P49200 40S ribosomal protein S20-13.8e-5590.83Show/hide
Query:  AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV
        AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVV
Subjt:  AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV

Query:  KQITSITIEPGVEVEVTIAD
        KQITSITIEPGVEVEVTIAD
Subjt:  KQITSITIEPGVEVEVTIAD

Q3ZBH8 40S ribosomal protein S206.3e-4270.09Show/hide
Query:  AMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQI
        A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQI
Subjt:  AMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQI

Query:  TSITIEPGVEVEVTIAD
        TSI+IEPGVEVEVTIAD
Subjt:  TSITIEPGVEVEVTIAD

Q9STY6 40S ribosomal protein S20-23.4e-5691.74Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

Arabidopsis top hitse value%identityAlignment
AT3G45030.1 Ribosomal protein S10p/S20e family protein2.7e-5690.83Show/hide
Query:  AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV
        AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVV
Subjt:  AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV

Query:  KQITSITIEPGVEVEVTIAD
        KQITSITIEPGVEVEVTIAD
Subjt:  KQITSITIEPGVEVEVTIAD

AT3G47370.1 Ribosomal protein S10p/S20e family protein2.4e-5791.74Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

AT3G47370.2 Ribosomal protein S10p/S20e family protein2.4e-5791.74Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

AT3G47370.3 Ribosomal protein S10p/S20e family protein2.4e-5791.74Show/hide
Query:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

AT5G62300.1 Ribosomal protein S10p/S20e family protein2.7e-5690.83Show/hide
Query:  AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV
        AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVV
Subjt:  AYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV

Query:  KQITSITIEPGVEVEVTIAD
        KQITSITIEPGVEVEVTIAD
Subjt:  KQITSITIEPGVEVEVTIAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTATGCAGCAATGAAGCCTACGAAGCCTGGTTTGGAGGACGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCCTCCAAGAATGTGAAGAACCTTGAAAA
GGTTTGTGCTGATTTGGTTCGGGGTGCCAAAGACAAGAGACTGAGGGTCAAAGGACCTGTGAGGATGCCAACTAAAGTCCTGAACATCACCACAAGGAAATCTCCCTGCG
GTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCACAAGCGGGTCATCGACCTCTTTAGCTCTGCTGACGTTGTTAAGCAGATCACCTCGATCACCATCGAA
CCTGGTGTTGAGGTTGAAGTCACAATTGCCGATTGA
mRNA sequenceShow/hide mRNA sequence
AATCTTCCATAAAAACCTAGCTGCTCAGCCGTAGCCGCCCTTCGCTCCGGTAGTAAGTAAGCAAACATGGCGTATGCAGCAATGAAGCCTACGAAGCCTGGTTTGGAGGA
CGCACAAGAGCAGATCCACAAGATTAGGATCACTCTTTCCTCCAAGAATGTGAAGAACCTTGAAAAGGTTTGTGCTGATTTGGTTCGGGGTGCCAAAGACAAGAGACTGA
GGGTCAAAGGACCTGTGAGGATGCCAACTAAAGTCCTGAACATCACCACAAGGAAATCTCCCTGCGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTCCAC
AAGCGGGTCATCGACCTCTTTAGCTCTGCTGACGTTGTTAAGCAGATCACCTCGATCACCATCGAACCTGGTGTTGAGGTTGAAGTCACAATTGCCGATTGATGTGTCCC
ATATTTCCGAAGTTCTTAAATCCACTTCGTAGTTATCTAGAGTTCTATGTACTCTGTGTGCCTGCCCTGTTTCAATCTCAAATGTTAAGGTTAATGCGTTATCCATTTTT
GTCATAATTTTGAAGTTCATAACTAATTTCGAGAGCAAAATTTTTGTCTCCTGTCATTTTGTTTTGGAGTTTTTTTTTACTTAGATGAAAAGTTAGAATATAATTCGATG
ATCTGTATTCTGCTTTTATATCCCTTATGTTTAATGTGGATGGTCTTTTCATATCCATTTGGTTTAATGTGTTGGCTTAGA
Protein sequenceShow/hide protein sequence
MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIE
PGVEVEVTIAD