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CSPI05G08090 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI05G08090
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCDGSH iron-sulfur domain-containing protein NEET
Genome locationChr5:6860629..6861562
RNA-Seq ExpressionCSPI05G08090
SyntenyCSPI05G08090
Gene Ontology termsGO:0010506 - regulation of autophagy (biological process)
GO:0005741 - mitochondrial outer membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
GO:0051537 - 2 iron, 2 sulfur cluster binding (molecular function)
InterPro domainsIPR018967 - Iron-binding zinc finger, CDGSH type
IPR042216 - MitoNEET, CDGSH iron-sulfur domain
IPR045131 - CDGSH iron-sulfur domain-containing protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143713.1 CDGSH iron-sulfur domain-containing protein NEET [Cucumis sativus]8.1e-5499.07Show/hide
Query:  MASILAISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN
        MASIL ISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN
Subjt:  MASILAISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN

Query:  VGPLLLKK
        VGPLLLKK
Subjt:  VGPLLLKK

XP_008467263.1 PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Cucumis melo]8.1e-4690.83Show/hide
Query:  MASILAISSPSSSLSTRPH-LLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGD
        MASI+AISSPSSSLSTR   LL R+FNDNGRRRTVVVRAE GSSGEHINPAIRKSE+KVVDSVL+ ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGD
Subjt:  MASILAISSPSSSLSTRPH-LLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGD

Query:  NVGPLLLKK
        NVGPLLLKK
Subjt:  NVGPLLLKK

XP_010109084.1 CDGSH iron-sulfur domain-containing protein NEET isoform X2 [Morus notabilis]4.3e-3177.78Show/hide
Query:  HLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
        H  + NF     RR VVVRAE    G+ INP IRKSE+KVVDSV+V ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Subjt:  HLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK

XP_023534172.1 CDGSH iron-sulfur domain-containing protein NEET [Cucurbita pepo subsp. pepo]1.9e-3170.87Show/hide
Query:  AISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLL
        ++ + S+  +TRP  ++       RRR VVVRAEG   GE INPAIRKSEDKVVDSV+V +L+KPLTPYCRCWRS TFPLCDGSHVKHNKATGDNVGPLL
Subjt:  AISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLL

Query:  LKK
        LKK
Subjt:  LKK

XP_038876467.1 CDGSH iron-sulfur domain-containing protein NEET [Benincasa hispida]2.6e-3677.98Show/hide
Query:  MASILAISSPSS-SLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGD
        MASI+AIS PSS S+++RP     NF  +GRR TVVVRA+ GS GE INPAIRK+EDKVVDSVL+ ELSKPLTPYCRCWRS TFPLCDGSHVKHNKATGD
Subjt:  MASILAISSPSS-SLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGD

Query:  NVGPLLLKK
        NVGPLLLK+
Subjt:  NVGPLLLKK

TrEMBL top hitse value%identityAlignment
A0A0A0KL88 ZnF_CDGSH domain-containing protein3.9e-5499.07Show/hide
Query:  MASILAISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN
        MASIL ISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN
Subjt:  MASILAISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN

Query:  VGPLLLKK
        VGPLLLKK
Subjt:  VGPLLLKK

A0A1S3CTC1 CDGSH iron-sulfur domain-containing protein NEET3.9e-4690.83Show/hide
Query:  MASILAISSPSSSLSTRPH-LLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGD
        MASI+AISSPSSSLSTR   LL R+FNDNGRRRTVVVRAE GSSGEHINPAIRKSE+KVVDSVL+ ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGD
Subjt:  MASILAISSPSSSLSTRPH-LLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGD

Query:  NVGPLLLKK
        NVGPLLLKK
Subjt:  NVGPLLLKK

A0A5A7UKN7 CDGSH iron-sulfur domain-containing protein NEET3.9e-4690.83Show/hide
Query:  MASILAISSPSSSLSTRPH-LLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGD
        MASI+AISSPSSSLSTR   LL R+FNDNGRRRTVVVRAE GSSGEHINPAIRKSE+KVVDSVL+ ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGD
Subjt:  MASILAISSPSSSLSTRPH-LLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGD

Query:  NVGPLLLKK
        NVGPLLLKK
Subjt:  NVGPLLLKK

A0A6J1K1P5 CDGSH iron-sulfur domain-containing protein NEET2.7e-3172.38Show/hide
Query:  AISSPSSSLSTRPHLLSRNFNDNG--RRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGP
        ++++ S+  +TRP     NF   G  RRR VVVRAEG   GE INPAIRKSEDKVVDSV+V +L+KPLTPYCRCWRS TFPLCDGSHVKHNKATGDNVGP
Subjt:  AISSPSSSLSTRPHLLSRNFNDNG--RRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGP

Query:  LLLKK
        LLLKK
Subjt:  LLLKK

W9S1F7 CDGSH iron-sulfur domain-containing protein 2A2.1e-3177.78Show/hide
Query:  HLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
        H  + NF     RR VVVRAE    G+ INP IRKSE+KVVDSV+V ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Subjt:  HLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK

SwissProt top hitse value%identityAlignment
C1BI29 CDGSH iron-sulfur domain-containing protein 2A1.1e-1658.06Show/hide
Query:  INPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
        IN  I+K   KVV+ + + +L++    YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+LKK
Subjt:  INPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK

Q6AZG1 CDGSH iron-sulfur domain-containing protein 2B1.1e-1659.68Show/hide
Query:  INPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
        IN  I+K   KVV+ + + +L      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+LKK
Subjt:  INPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK

Q6PCF8 CDGSH iron-sulfur domain-containing protein 2A1.1e-1659.68Show/hide
Query:  INPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
        IN  I+K   KVV+ + + +L      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+LKK
Subjt:  INPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK

Q7T326 CDGSH iron-sulfur domain-containing protein 24.8e-1759.68Show/hide
Query:  INPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
        IN  I+K   KVV+ + + +L  P   YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+LKK
Subjt:  INPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK

Q9FLI7 CDGSH iron-sulfur domain-containing protein NEET2.6e-3181.01Show/hide
Query:  RRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
        ++R VVVRAEGG     INP IRK+EDKVVDSV+V ELSK +TPYCRCWRSGTFPLCDGSHVKHNKA GDNVGPLLLKK
Subjt:  RRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK

Arabidopsis top hitse value%identityAlignment
AT5G51720.1 2 iron, 2 sulfur cluster binding1.9e-3281.01Show/hide
Query:  RRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
        ++R VVVRAEGG     INP IRK+EDKVVDSV+V ELSK +TPYCRCWRSGTFPLCDGSHVKHNKA GDNVGPLLLKK
Subjt:  RRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCCATTCTAGCCATTTCTTCACCTTCTTCTTCCCTATCAACAAGACCCCATCTTCTCTCTCGTAATTTCAACGACAATGGACGACGTCGTACTGTTGTCGTAAG
AGCTGAAGGTGGCAGCAGCGGCGAACATATAAACCCTGCAATCAGAAAGAGTGAAGACAAAGTGGTGGACTCTGTGCTCGTTCCTGAACTTTCCAAGCCTCTCACTCCTT
ATTGCAGATGTTGGAGGTCAGGGACATTTCCTCTTTGTGATGGAAGCCATGTTAAGCACAACAAAGCAACTGGAGATAACGTTGGTCCTTTGCTCTTAAAGAAGTAG
mRNA sequenceShow/hide mRNA sequence
GTTGTGTTGTGAAGGAAATTTAGGGAAGGAGACGTGTCAAATGAAGATCCACCAATTAGGATGTGGTTTCAATTGTAGTTTAAAAGCGTATGGTCTCCACACGTTCATCA
CCCCCTCCCTCCATTTCGATACTTCACCACATATCTGAGTTTACTATTTGCATACTATGGCATCCATTCTAGCCATTTCTTCACCTTCTTCTTCCCTATCAACAAGACCC
CATCTTCTCTCTCGTAATTTCAACGACAATGGACGACGTCGTACTGTTGTCGTAAGAGCTGAAGGTGGCAGCAGCGGCGAACATATAAACCCTGCAATCAGAAAGAGTGA
AGACAAAGTGGTGGACTCTGTGCTCGTTCCTGAACTTTCCAAGCCTCTCACTCCTTATTGCAGATGTTGGAGGTCAGGGACATTTCCTCTTTGTGATGGAAGCCATGTTA
AGCACAACAAAGCAACTGGAGATAACGTTGGTCCTTTGCTCTTAAAGAAGTAGTAGACATTACACACATTCTCATGCTTTTCTTTTATTTCTTTTTCATTCTCCAACCTC
TTTATCTCTTCCTGCCTAGCTTCTGTTGAGAACACATTTGAGTTTGTTTCTTAAAATAGTTAAAAACACTTTTGTCTAGTAGAAAAAGACTACCGTTTCAGTCGTTGTTC
ATGAATCGTATTTAATTGTGATACTAAATATTAAATTGATTGAATTAGCATAAATAAAAAATAAAAGTATGTTTGCAAGTCATTTTGAA
Protein sequenceShow/hide protein sequence
MASILAISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK