CuGenDBv2

Gene ID	CSPI05G08330
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	chromosome transmission fidelity protein 8 homolog
Genome location	Chr5:7074608..7077190
RNA-Seq Expression	CSPI05G08330
Synteny	CSPI05G08330
Gene Ontology terms	GO:0007064 - mitotic sister chromatid cohesion (biological process) GO:0031390 - Ctf18 RFC-like complex (cellular component)
InterPro domains	IPR018607 - Chromosome transmission fidelity protein 8

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0055164.1 hypothetical protein E6C27_scaffold231G00960 [Cucumis melo var. makuwa]

9.7e-68

94.29

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Query:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVI
        M+IKLKCNCGETKCLEWA+VELQGVVEPQSTFQDR+QNLEIGILCRPSAQE+YTFTVGYHELTGSK+SLKKPLLVLKKTRSVDEDQSSD KSGNAELEVI
Subjt:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVI

Query:  GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT
        GIIRQRILFKTRPKALISKP+PLVKERSRASGSAV GQTT
Subjt:  GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT

XP_004143632.1 putative uncharacterized protein DDB_G0287975 isoform X1 [Cucumis sativus]

1.6e-70

99.29

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Query:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVI
        MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSD+KSGNAELEVI
Subjt:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVI

Query:  GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT
        GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT
Subjt:  GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT

XP_008467231.1 PREDICTED: putative uncharacterized protein DDB_G0287975 [Cucumis melo]

4.8e-67

94.29

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Query:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVI
        M+IKLKCNCGETKCLEWAVVELQGVVE QSTFQDR+QNLEIGILCRPSAQE+YTFTVGYHELTGSK+SLKKPLLVLKKTRSVDEDQSSD KSGNAELEVI
Subjt:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVI

Query:  GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT
        GIIRQRILFKTRPKALISKP+PLVKERSRASGSAV GQTT
Subjt:  GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT

XP_023551664.1 putative uncharacterized protein DDB_G0287975 [Cucurbita pepo subsp. pepo]

4.0e-61

85.71

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Query:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVI
        M+IK+KCNCGETKCLEWAVVELQG+VE Q +F+DRLQ LEIG+LCRPSAQEVYTFTVGYHELTGSK+ LKKPLLVLKK + VDEDQS D+KS  AELEVI
Subjt:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVI

Query:  GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT
        GIIRQRILFKTRPKALISKPQP VKERSRASGSAVTGQ T
Subjt:  GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT

XP_038906846.1 putative uncharacterized protein DDB_G0287975 [Benincasa hispida]

4.4e-68

95.71

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Query:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVI
        M+IKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSK+ LKKPLLVLKK RSVDEDQSSD+KS NAELEVI
Subjt:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVI

Query:  GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT
        GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT
Subjt:  GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPT4 Uncharacterized protein

7.7e-71

99.29

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Query:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVI
        MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSD+KSGNAELEVI
Subjt:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVI

Query:  GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT
        GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT
Subjt:  GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT

A0A1S3CT18 Uncharacterized protein

2.3e-67

94.29

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Query:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVI
        M+IKLKCNCGETKCLEWAVVELQGVVE QSTFQDR+QNLEIGILCRPSAQE+YTFTVGYHELTGSK+SLKKPLLVLKKTRSVDEDQSSD KSGNAELEVI
Subjt:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVI

Query:  GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT
        GIIRQRILFKTRPKALISKP+PLVKERSRASGSAV GQTT
Subjt:  GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT

A0A5A7UJ36 Uncharacterized protein

4.7e-68

94.29

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Query:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVI
        M+IKLKCNCGETKCLEWA+VELQGVVEPQSTFQDR+QNLEIGILCRPSAQE+YTFTVGYHELTGSK+SLKKPLLVLKKTRSVDEDQSSD KSGNAELEVI
Subjt:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVI

Query:  GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT
        GIIRQRILFKTRPKALISKP+PLVKERSRASGSAV GQTT
Subjt:  GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT

A0A5D3BQB7 Uncharacterized protein

2.3e-67

94.29

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Query:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVI
        M+IKLKCNCGETKCLEWAVVELQGVVE QSTFQDR+QNLEIGILCRPSAQE+YTFTVGYHELTGSK+SLKKPLLVLKKTRSVDEDQSSD KSGNAELEVI
Subjt:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVI

Query:  GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT
        GIIRQRILFKTRPKALISKP+PLVKERSRASGSAV GQTT
Subjt:  GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT

A0A6J1I4S6 Uncharacterized protein

4.3e-61

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Query:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVI
        M+IK+KCNCGETKCLEWAVVELQG+VE Q +F+DR Q LEIG+LCRPSAQEVYTFTVGYHELTGSK+ LKKPLLVLKK + VDEDQS D+KS  AELEVI
Subjt:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVI

Query:  GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT
        GIIRQR LFKTRPKALISKPQP VKERSRASGSAVTGQTT
Subjt:  GIIRQRILFKTRPKALISKPQPLVKERSRASGSAVTGQTT

SwissProt top hits

e value

%identity

Alignment

P0C6T1 Chromosome transmission fidelity protein 8 homolog

2.2e-06

33.01

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Query:  EWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVIGIIRQRILFKTRPKA
        EW ++ELQG +E  + +   L    +G L   + + +    VG+H L G  I L+KP  VL K     +D     +    +  V  +I+ +ILFKTRPK 
Subjt:  EWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVIGIIRQRILFKTRPKA

Query:  LIS
        +I+
Subjt:  LIS

P0CG11 Chromosome transmission fidelity protein 8 homolog

8.4e-06

33.01

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Query:  EWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVIGIIRQRILFKTRPKA
        EW ++ELQG +E + +    L    +G L   + + +    VG+H L G  I L+KP  VL K    ++D             V  +I+ +ILFKTRPK 
Subjt:  EWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVIGIIRQRILFKTRPKA

Query:  LIS
        +I+
Subjt:  LIS

P0CG13 Chromosome transmission fidelity protein 8 homolog

5.8e-07

33.98

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Query:  EWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVIGIIRQRILFKTRPKA
        EW ++ELQG +E  + +   L    +G L   + + +    VG+H L G  I L+KP  VL K    D+D     +       V  +I+ +ILFKTRPK 
Subjt:  EWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVIGIIRQRILFKTRPKA

Query:  LIS
        +I+
Subjt:  LIS

P0CG15 Chromosome transmission fidelity protein 8 homolog

5.8e-07

33.01

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Query:  EWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVIGIIRQRILFKTRPKA
        EW ++ELQG +E  + +   L    +G L   + + +    VG+H L G  I L+KP  VL K     +D     +    +  V  +I+ +ILFKTRPK 
Subjt:  EWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVIGIIRQRILFKTRPKA

Query:  LIS
        +I+
Subjt:  LIS

Q54JL4 Putative uncharacterized protein DDB_G0287975

1.1e-08

32.48

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Query:  EWAVVELQGVVEPQSTFQDRLQNLEIGILC-RPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTR-------------SVD-EDQSSDSKSGNAELEVI
        EW +++LQG +E    +   L+N  +GIL  +P+ ++ ++F +G   L G ++ LKKPLLV+KK++             +VD +D   + K    E  + 
Subjt:  EWAVVELQGVVEPQSTFQDRLQNLEIGILC-RPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTR-------------SVD-EDQSSDSKSGNAELEVI

Query:  GIIRQRILFKTRPKALI
        GI   +I F TRP   I
Subjt:  GIIRQRILFKTRPKALI

Arabidopsis top hits

e value

%identity

Alignment

AT5G52220.1 CONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro:IPR018607); Has 127 Blast hits to 127 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 17; Plants - 31; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

1.6e-36

65.83

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Query:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCR-PSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNA-ELE
        MEI++KC CGE +C EWA+VELQGVVE Q++FQ  +QNLEIG LC   S+Q  YTFTVGYHEL GSK++LKKPLLVLKK +        D  SG A ELE
Subjt:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCR-PSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNA-ELE

Query:  VIGIIRQRILFKTRPKALIS
        V+GIIR +ILFKTRPK LIS
Subjt:  VIGIIRQRILFKTRPKALIS

AT5G52220.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro:IPR018607).

1.6e-36

65.83

Show/hide

Query:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCR-PSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNA-ELE
        MEI++KC CGE +C EWA+VELQGVVE Q++FQ  +QNLEIG LC   S+Q  YTFTVGYHEL GSK++LKKPLLVLKK +        D  SG A ELE
Subjt:  MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCR-PSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNA-ELE

Query:  VIGIIRQRILFKTRPKALIS
        V+GIIR +ILFKTRPK LIS
Subjt:  VIGIIRQRILFKTRPKALIS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAGATTAAGCTGAAATGTAACTGTGGCGAAACCAAATGCTTGGAATGGGCCGTCGTTGAGTTACAAGGCGTGGTTGAACCTCAATCCACCTTCCAAGATCGCCTTCA
AAACCTCGAAATCGGCATTCTATGTCGACCCTCCGCTCAGGAAGTGTATACTTTTACAGTAGGGTACCATGAGCTGACAGGAAGCAAAATTTCTTTGAAGAAGCCATTGT
TGGTGTTGAAGAAAACGAGGTCTGTGGATGAGGATCAGAGTAGCGATTCTAAATCGGGTAATGCAGAGTTGGAAGTGATTGGGATAATTAGGCAGCGGATTCTGTTTAAG
ACCAGACCAAAGGCACTCATATCCAAACCACAGCCATTGGTTAAGGAAAGATCCCGTGCTTCAGGATCTGCAGTGACAGGCCAAACAACATGA

mRNA sequence

Show/hide mRNA sequence

GAGAAAACGTGTGAATGTTCTTTCCAAACGGGCGGGAAGAGCTCTCTTATTTCCCGCCATTTTCCATCTACTCATCGGAGCTTCACGATTCCTTTTATTCTTTTATCTCT
CAAAGCTGTGGAATCTTAAATCGGAAGCCATAGAAAGATGGAGATTAAGCTGAAATGTAACTGTGGCGAAACCAAATGCTTGGAATGGGCCGTCGTTGAGTTACAAGGCG
TGGTTGAACCTCAATCCACCTTCCAAGATCGCCTTCAAAACCTCGAAATCGGCATTCTATGTCGACCCTCCGCTCAGGAAGTGTATACTTTTACAGTAGGGTACCATGAG
CTGACAGGAAGCAAAATTTCTTTGAAGAAGCCATTGTTGGTGTTGAAGAAAACGAGGTCTGTGGATGAGGATCAGAGTAGCGATTCTAAATCGGGTAATGCAGAGTTGGA
AGTGATTGGGATAATTAGGCAGCGGATTCTGTTTAAGACCAGACCAAAGGCACTCATATCCAAACCACAGCCATTGGTTAAGGAAAGATCCCGTGCTTCAGGATCTGCAG
TGACAGGCCAAACAACATGAGTTCTGTGTTTATAGGTTAAATGAAATCCATCCATATTTTTGTTTCCATAGATTCTATCACGAAGGTGGAATGAAATTATTGATTTATCA
TTCACTCATCCTAATATATTTATTTTCTCAACCAGGAAAAAGAAAATCTTATCAATTTTACTCCCAAGAATACTGTGATAAGTAAGTTATTTTCCAACTTTACATTTAAT
ACAAGATTCAACAACCTTTTTTCTCAGCCA

Protein sequence

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MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYHELTGSKISLKKPLLVLKKTRSVDEDQSSDSKSGNAELEVIGIIRQRILFK
TRPKALISKPQPLVKERSRASGSAVTGQTT

CSPI05G08330 (gene) of Cucumber (PI 183967) v1 genome